Wall clock time and date at job start Tue Mar 31 2020 00:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38689 * 119.27597 * 2 1 4 4 C 1.38001 * 119.62606 * 179.97438 * 3 2 1 5 5 C 1.41002 * 118.28451 * 359.97438 * 4 3 2 6 6 C 1.41022 * 120.70366 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99439 * 157.24607 * 6 5 4 8 8 C 1.39943 * 119.99970 * 337.24606 * 6 5 4 9 9 N 1.30869 * 120.00394 * 342.05910 * 8 6 5 10 10 Si 1.86805 * 119.99777 * 162.05610 * 8 6 5 11 11 H 1.48503 * 109.47067 * 89.99945 * 10 8 6 12 12 H 1.48496 * 109.47426 * 209.99727 * 10 8 6 13 13 H 1.48500 * 109.47326 * 330.00367 * 10 8 6 14 14 C 1.41705 * 118.58765 * 0.02562 * 5 4 3 15 15 N 1.38088 * 119.90252 * 179.97438 * 14 5 4 16 16 C 1.40443 * 110.99674 * 114.65251 * 15 14 5 17 17 C 1.54282 * 111.68810 * 188.29932 * 16 15 14 18 18 O 1.40625 * 109.12196 * 282.77415 * 17 16 15 19 19 C 1.44090 * 116.73093 * 93.90756 * 18 17 16 20 20 C 1.53618 * 112.55021 * 318.10594 * 19 18 17 21 21 H 1.08996 * 109.03236 * 79.13628 * 20 19 18 22 22 O 1.42896 * 109.03372 * 198.06319 * 20 19 18 23 23 C 1.47630 * 110.99969 * 242.95189 * 15 14 5 24 24 N 1.31965 * 119.27912 * 179.73595 * 2 1 3 25 25 H 1.08995 * 109.47284 * 89.99712 * 1 2 3 26 26 H 1.08997 * 109.47088 * 329.99311 * 1 2 3 27 27 H 1.09004 * 109.46665 * 209.99911 * 1 2 3 28 28 H 1.07997 * 120.18394 * 359.95801 * 3 2 1 29 29 H 1.08003 * 120.85546 * 180.02562 * 4 3 2 30 30 H 0.97003 * 120.00044 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.03945 * 308.86625 * 16 15 14 32 32 H 1.09003 * 109.04014 * 67.73386 * 16 15 14 33 33 H 1.08993 * 109.52690 * 42.66190 * 17 16 15 34 34 H 1.08999 * 109.52831 * 162.87683 * 17 16 15 35 35 H 1.08994 * 108.86143 * 78.89809 * 19 18 17 36 36 H 1.09001 * 108.86138 * 197.41644 * 19 18 17 37 37 H 0.96700 * 113.99722 * 299.99960 * 22 20 19 38 38 H 1.08999 * 109.59196 * 273.29907 * 23 15 14 39 39 H 1.09000 * 109.59031 * 33.73020 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 0.0005 5 6 4.2409 -0.0194 0.0016 6 6 5.6502 -0.0703 0.0017 7 1 6.1586 -0.9515 0.3642 8 6 6.3898 1.0209 -0.4680 9 7 5.8156 1.9263 -1.2185 10 14 8.1968 1.1852 -0.0237 11 1 9.0231 0.5006 -1.0503 12 1 8.5648 2.6228 0.0297 13 1 8.4391 0.5625 1.3025 14 6 3.4737 -1.2108 0.0016 15 7 4.1075 -2.4377 0.0021 16 6 3.8520 -3.1355 1.1938 17 6 4.7118 -4.4120 1.3025 18 8 4.1610 -5.4099 0.4790 19 6 4.6972 -5.5191 -0.8540 20 6 4.9281 -4.1494 -1.5101 21 1 5.8547 -3.7229 -1.1258 22 8 5.0467 -4.3238 -2.9234 23 6 3.7940 -3.1956 -1.2254 24 7 2.1524 -1.1511 0.0053 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 0.8899 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 1.6364 2.1399 -0.0007 29 1 4.1134 2.1487 0.0010 30 1 6.3284 2.6825 -1.5443 31 1 4.0721 -2.4855 2.0406 32 1 2.7984 -3.4130 1.2245 33 1 5.7298 -4.1941 0.9797 34 1 4.7222 -4.7573 2.3363 35 1 5.6462 -6.0531 -0.8094 36 1 4.0006 -6.0897 -1.4683 37 1 5.7776 -4.8986 -3.1888 38 1 2.8711 -3.7576 -1.0822 39 1 3.6782 -2.5058 -2.0613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164517981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:51 Heat of formation + Delta-G solvation = -51.919802 kcal Electronic energy + Delta-G solvation = -22637.822287 eV Core-core repulsion = 19352.526623 eV Total energy + Delta-G solvation = -3285.295664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.83299 -38.31653 -36.39663 -35.63290 -34.25730 -31.03121 -30.72687 -30.29819 -27.86649 -27.15464 -26.09598 -23.99014 -22.00143 -20.83785 -20.51111 -19.97814 -17.41092 -17.28309 -16.70220 -15.95508 -15.58678 -15.15943 -14.98413 -14.39071 -14.35004 -13.92196 -13.34345 -13.02950 -12.96592 -12.65291 -12.37014 -12.05453 -11.72324 -11.62814 -11.48782 -11.43143 -11.15703 -10.95439 -10.89494 -10.87952 -10.58023 -10.49475 -9.85335 -9.62286 -9.33795 -9.27326 -8.39938 -8.12616 -7.49512 -7.42119 -6.86332 -4.41200 2.55662 2.87362 3.00464 3.04239 3.17240 3.83386 3.90931 4.21372 4.53660 4.88724 4.99531 5.20833 5.44253 5.49736 5.55126 5.65039 5.74387 5.78717 5.81380 6.05541 6.10450 6.27729 6.31110 6.36806 6.42181 6.49482 6.54636 6.57229 6.87248 6.95119 7.10501 7.14179 7.47756 7.58033 7.71156 7.80373 7.99764 8.03602 8.28811 8.56775 8.67466 8.92138 9.60378 10.02224 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.008329 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.831297 B = 3360.789428 C = 4799.666986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.011 4.011 3 C -0.143 4.143 4 C -0.139 4.139 5 C 0.092 3.908 6 C -0.414 4.414 7 H 0.091 0.909 8 C 0.070 3.930 9 N -0.785 5.785 10 Si 0.911 3.089 11 H -0.268 1.268 12 H -0.276 1.276 13 H -0.259 1.259 14 C 0.156 3.844 15 N -0.464 5.464 16 C 0.050 3.950 17 C 0.062 3.938 18 O -0.383 6.383 19 C 0.036 3.964 20 C 0.075 3.925 21 H 0.072 0.928 22 O -0.559 6.559 23 C 0.087 3.913 24 N -0.484 5.484 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.283 0.717 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.373 0.627 38 H 0.047 0.953 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 -7.058 1.393 7.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.152 4.152 3 C -0.163 4.163 4 C -0.165 4.165 5 C 0.086 3.914 6 C -0.443 4.443 7 H 0.109 0.891 8 C -0.149 4.149 9 N -0.410 5.410 10 Si 0.735 3.265 11 H -0.194 1.194 12 H -0.201 1.201 13 H -0.183 1.183 14 C -0.076 4.076 15 N -0.186 5.186 16 C -0.080 4.080 17 C -0.015 4.015 18 O -0.302 6.302 19 C -0.041 4.041 20 C 0.016 3.984 21 H 0.090 0.910 22 O -0.363 6.363 23 C -0.040 4.040 24 N -0.195 5.195 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.147 0.853 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.925 -7.262 1.323 7.439 hybrid contribution 1.226 0.679 -0.036 1.402 sum 2.151 -6.583 1.288 7.044 Atomic orbital electron populations 1.20262 0.91869 1.00578 1.00273 1.19986 0.94453 0.88238 1.12507 1.21426 0.95361 0.96898 1.02647 1.21670 0.92380 0.98771 1.03686 1.18087 0.94105 0.89842 0.89411 1.19522 0.90901 1.00352 1.33526 0.89110 1.26090 1.01467 0.94690 0.92635 1.69831 1.38833 1.09876 1.22450 0.86261 0.81586 0.78304 0.80365 1.19362 1.20097 1.18257 1.19022 0.86259 0.89025 1.13254 1.56305 1.58830 1.02563 1.00937 1.21582 0.98396 0.94717 0.93291 1.22648 0.97021 0.87660 0.94168 1.87487 1.64325 1.55275 1.23133 1.23659 0.98976 0.97307 0.84150 1.22345 1.00974 0.94257 0.80864 0.91005 1.86606 1.55623 1.72057 1.21989 1.21417 0.94357 0.95050 0.93173 1.66719 1.11136 1.30368 1.11298 0.93407 0.93054 0.92904 0.88464 0.85300 0.90600 0.90634 0.94619 0.92183 0.89449 0.93395 0.89198 0.78128 0.93515 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.15 36.00 0.37 -0.98 16 2 C -0.01 -0.26 6.79 -82.37 -0.56 -0.82 16 3 C -0.14 -3.33 9.69 -39.50 -0.38 -3.71 16 4 C -0.14 -3.52 8.81 -38.62 -0.34 -3.86 16 5 C 0.09 2.38 5.62 -106.47 -0.60 1.78 16 6 C -0.41 -10.43 8.72 -37.89 -0.33 -10.76 16 7 H 0.09 2.23 7.57 -52.49 -0.40 1.83 16 8 C 0.07 1.67 5.18 -17.32 -0.09 1.58 16 9 N -0.79 -19.37 10.89 55.55 0.60 -18.76 16 10 Si 0.91 17.84 29.60 -169.99 -5.03 12.81 16 11 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 12 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 13 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 14 C 0.16 3.84 4.98 -155.03 -0.77 3.07 16 15 N -0.46 -10.02 3.22 -177.35 -0.57 -10.59 16 16 C 0.05 0.95 4.96 -6.50 -0.03 0.92 16 17 C 0.06 0.97 6.43 37.83 0.24 1.22 16 18 O -0.38 -6.22 10.12 -34.27 -0.35 -6.56 16 19 C 0.04 0.51 6.33 37.48 0.24 0.74 16 20 C 0.08 1.24 3.02 -27.46 -0.08 1.16 16 21 H 0.07 1.23 7.39 -51.93 -0.38 0.85 16 22 O -0.56 -8.62 13.19 -35.23 -0.46 -9.08 16 23 C 0.09 1.78 4.81 -4.48 -0.02 1.76 16 24 N -0.48 -11.88 9.76 -8.11 -0.08 -11.96 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.13 3.30 6.15 -52.48 -0.32 2.98 16 30 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 31 H 0.08 1.47 7.99 -51.93 -0.41 1.06 16 32 H 0.04 0.74 7.96 -51.93 -0.41 0.33 16 33 H 0.06 0.91 7.10 -51.93 -0.37 0.54 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.20 8.13 -51.93 -0.42 0.78 16 37 H 0.37 3.71 9.08 45.56 0.41 4.13 16 38 H 0.05 0.99 7.64 -51.93 -0.40 0.59 16 39 H 0.08 1.92 7.71 -51.93 -0.40 1.52 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -28.95 317.29 -8.24 -37.20 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -4.77 Total: 10.08 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.36 Total: -7.90 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -0.05 Total: -41.32 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.81 Total: -15.65 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.95 -8.24 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164517981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.724 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds