Wall clock time and date at job start Tue Mar 31 2020 00:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38689 * 119.27597 * 2 1 4 4 C 1.38001 * 119.62606 * 179.97438 * 3 2 1 5 5 C 1.41002 * 118.28451 * 359.97438 * 4 3 2 6 6 C 1.41022 * 120.70366 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99439 * 157.24607 * 6 5 4 8 8 C 1.39943 * 119.99970 * 337.24606 * 6 5 4 9 9 N 1.30869 * 120.00394 * 342.05910 * 8 6 5 10 10 Si 1.86805 * 119.99777 * 162.05610 * 8 6 5 11 11 H 1.48503 * 109.47067 * 89.99945 * 10 8 6 12 12 H 1.48496 * 109.47426 * 209.99727 * 10 8 6 13 13 H 1.48500 * 109.47326 * 330.00367 * 10 8 6 14 14 C 1.41705 * 118.58765 * 0.02562 * 5 4 3 15 15 N 1.38088 * 119.90252 * 179.97438 * 14 5 4 16 16 C 1.40443 * 110.99674 * 114.65251 * 15 14 5 17 17 C 1.54282 * 111.68810 * 188.29932 * 16 15 14 18 18 O 1.40625 * 109.12196 * 282.77415 * 17 16 15 19 19 C 1.44090 * 116.73093 * 93.90756 * 18 17 16 20 20 C 1.53618 * 112.55021 * 318.10594 * 19 18 17 21 21 H 1.08996 * 109.03236 * 79.13628 * 20 19 18 22 22 O 1.42896 * 109.03372 * 198.06319 * 20 19 18 23 23 C 1.47630 * 110.99969 * 242.95189 * 15 14 5 24 24 N 1.31965 * 119.27912 * 179.73595 * 2 1 3 25 25 H 1.08995 * 109.47284 * 89.99712 * 1 2 3 26 26 H 1.08997 * 109.47088 * 329.99311 * 1 2 3 27 27 H 1.09004 * 109.46665 * 209.99911 * 1 2 3 28 28 H 1.07997 * 120.18394 * 359.95801 * 3 2 1 29 29 H 1.08003 * 120.85546 * 180.02562 * 4 3 2 30 30 H 0.97003 * 120.00044 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.03945 * 308.86625 * 16 15 14 32 32 H 1.09003 * 109.04014 * 67.73386 * 16 15 14 33 33 H 1.08993 * 109.52690 * 42.66190 * 17 16 15 34 34 H 1.08999 * 109.52831 * 162.87683 * 17 16 15 35 35 H 1.08994 * 108.86143 * 78.89809 * 19 18 17 36 36 H 1.09001 * 108.86138 * 197.41644 * 19 18 17 37 37 H 0.96700 * 113.99722 * 299.99960 * 22 20 19 38 38 H 1.08999 * 109.59196 * 273.29907 * 23 15 14 39 39 H 1.09000 * 109.59031 * 33.73020 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 0.0005 5 6 4.2409 -0.0194 0.0016 6 6 5.6502 -0.0703 0.0017 7 1 6.1586 -0.9515 0.3642 8 6 6.3898 1.0209 -0.4680 9 7 5.8156 1.9263 -1.2185 10 14 8.1968 1.1852 -0.0237 11 1 9.0231 0.5006 -1.0503 12 1 8.5648 2.6228 0.0297 13 1 8.4391 0.5625 1.3025 14 6 3.4737 -1.2108 0.0016 15 7 4.1075 -2.4377 0.0021 16 6 3.8520 -3.1355 1.1938 17 6 4.7118 -4.4120 1.3025 18 8 4.1610 -5.4099 0.4790 19 6 4.6972 -5.5191 -0.8540 20 6 4.9281 -4.1494 -1.5101 21 1 5.8547 -3.7229 -1.1258 22 8 5.0467 -4.3238 -2.9234 23 6 3.7940 -3.1956 -1.2254 24 7 2.1524 -1.1511 0.0053 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 0.8899 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 1.6364 2.1399 -0.0007 29 1 4.1134 2.1487 0.0010 30 1 6.3284 2.6825 -1.5443 31 1 4.0721 -2.4855 2.0406 32 1 2.7984 -3.4130 1.2245 33 1 5.7298 -4.1941 0.9797 34 1 4.7222 -4.7573 2.3363 35 1 5.6462 -6.0531 -0.8094 36 1 4.0006 -6.0897 -1.4683 37 1 5.7776 -4.8986 -3.1888 38 1 2.8711 -3.7576 -1.0822 39 1 3.6782 -2.5058 -2.0613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164517981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:51 Heat of formation + Delta-G solvation = -72.604754 kcal Electronic energy + Delta-G solvation = -22638.719254 eV Core-core repulsion = 19352.526623 eV Total energy + Delta-G solvation = -3286.192631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40815 -39.91496 -37.65856 -37.20322 -36.09063 -32.81749 -32.10474 -32.06028 -29.57382 -28.67672 -27.48577 -25.74429 -23.67030 -22.48513 -22.06581 -21.59413 -19.19807 -18.75371 -18.03863 -17.43617 -17.31254 -16.67751 -16.43320 -15.99357 -15.76264 -15.62546 -14.79348 -14.61646 -14.44881 -14.32226 -13.93090 -13.68792 -13.39428 -13.19113 -13.01825 -12.96570 -12.70272 -12.58023 -12.40941 -12.28333 -12.18792 -12.00915 -11.63917 -11.12661 -10.88352 -10.55175 -10.24446 -10.00022 -9.30891 -9.20469 -8.66504 -6.31350 0.73182 1.02649 1.39854 1.50250 1.56924 2.19546 2.67395 2.73991 2.79140 3.57483 3.61318 3.69762 3.94905 3.98105 4.18391 4.25832 4.37564 4.37929 4.44160 4.54385 4.62094 4.65031 4.76181 4.87364 4.91256 4.94474 4.99804 5.06088 5.09505 5.19069 5.29247 5.32863 5.72768 5.84125 6.13694 6.22271 6.38017 6.48932 6.69379 6.79724 6.84694 7.07215 7.72793 8.25008 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.008329 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.831297 B = 3360.789428 C = 4799.666986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.024 4.024 3 C -0.147 4.147 4 C -0.162 4.162 5 C 0.061 3.939 6 C -0.438 4.438 7 H 0.089 0.911 8 C 0.032 3.968 9 N -0.816 5.816 10 Si 0.984 3.016 11 H -0.263 1.263 12 H -0.267 1.267 13 H -0.254 1.254 14 C 0.144 3.856 15 N -0.466 5.466 16 C 0.051 3.949 17 C 0.074 3.926 18 O -0.396 6.396 19 C 0.040 3.960 20 C 0.086 3.914 21 H 0.067 0.933 22 O -0.573 6.573 23 C 0.094 3.906 24 N -0.501 5.501 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.291 0.709 31 H 0.066 0.934 32 H 0.014 0.986 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.399 0.601 38 H 0.034 0.966 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -8.183 1.753 8.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.165 4.165 3 C -0.167 4.167 4 C -0.188 4.188 5 C 0.055 3.945 6 C -0.467 4.467 7 H 0.107 0.893 8 C -0.184 4.184 9 N -0.441 5.441 10 Si 0.804 3.196 11 H -0.187 1.187 12 H -0.192 1.192 13 H -0.178 1.178 14 C -0.087 4.087 15 N -0.188 5.188 16 C -0.079 4.079 17 C -0.004 4.004 18 O -0.315 6.315 19 C -0.036 4.036 20 C 0.026 3.974 21 H 0.085 0.915 22 O -0.381 6.381 23 C -0.033 4.033 24 N -0.213 5.213 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.032 0.968 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.249 0.751 38 H 0.052 0.948 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.996 -8.410 1.671 8.804 hybrid contribution 0.780 1.047 -0.218 1.324 sum 2.776 -7.363 1.454 8.003 Atomic orbital electron populations 1.20301 0.88551 1.02080 1.01428 1.20796 0.96818 0.87875 1.10981 1.21727 0.94857 0.98303 1.01826 1.21726 0.93454 0.98386 1.05226 1.18460 0.95072 0.90606 0.90362 1.19668 0.90952 1.01282 1.34749 0.89301 1.26925 1.05895 0.93783 0.91809 1.69874 1.40805 1.10476 1.22957 0.85171 0.75707 0.78611 0.80115 1.18730 1.19189 1.17796 1.19383 0.86523 0.90200 1.12604 1.56403 1.58346 1.02033 1.02030 1.21646 0.98077 0.96237 0.91903 1.22618 0.96199 0.85708 0.95835 1.87476 1.65113 1.54901 1.23969 1.23742 1.01144 0.95668 0.83084 1.22076 0.98639 0.94853 0.81821 0.91518 1.86549 1.57268 1.73148 1.21178 1.21304 0.95927 0.94623 0.91441 1.66863 1.11277 1.31171 1.12029 0.92291 0.90326 0.92630 0.85699 0.86263 0.89799 0.91596 0.96807 0.91287 0.86480 0.89563 0.88279 0.75117 0.94766 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.38 10.15 71.24 0.72 -1.65 16 2 C -0.02 -1.14 6.79 42.65 0.29 -0.85 16 3 C -0.15 -6.93 9.69 22.32 0.22 -6.71 16 4 C -0.16 -8.46 8.81 22.89 0.20 -8.26 16 5 C 0.06 3.29 5.62 -21.06 -0.12 3.18 16 6 C -0.44 -22.68 8.72 23.37 0.20 -22.47 16 7 H 0.09 4.47 7.57 -2.91 -0.02 4.45 16 8 C 0.03 1.55 5.18 85.25 0.44 1.99 16 9 N -0.82 -41.04 10.89 21.83 0.24 -40.80 16 10 Si 0.98 36.33 29.60 68.60 2.03 38.36 16 11 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 12 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 13 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 14 C 0.14 7.38 4.98 134.05 0.67 8.05 16 15 N -0.47 -20.66 3.22 -715.01 -2.30 -22.97 16 16 C 0.05 1.97 4.96 87.91 0.44 2.40 16 17 C 0.07 2.16 6.43 72.42 0.47 2.63 16 18 O -0.40 -11.95 10.12 -145.55 -1.47 -13.42 16 19 C 0.04 1.02 6.33 72.19 0.46 1.48 16 20 C 0.09 2.75 3.02 30.12 0.09 2.84 16 21 H 0.07 2.21 7.39 -2.39 -0.02 2.19 16 22 O -0.57 -16.97 13.19 -148.98 -1.96 -18.94 16 23 C 0.09 3.96 4.81 85.48 0.41 4.37 16 24 N -0.50 -25.34 9.76 -179.57 -1.75 -27.09 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 27 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 29 H 0.12 6.35 6.15 -2.91 -0.02 6.34 16 30 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 31 H 0.07 2.64 7.99 -2.39 -0.02 2.62 16 32 H 0.01 0.59 7.96 -2.39 -0.02 0.57 16 33 H 0.07 1.92 7.10 -2.39 -0.02 1.91 16 34 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.10 2.37 8.13 -2.39 -0.02 2.35 16 37 H 0.40 6.95 9.08 -74.06 -0.67 6.28 16 38 H 0.03 1.49 7.64 -2.39 -0.02 1.47 16 39 H 0.04 2.08 7.71 -2.39 -0.02 2.07 16 Total: -1.00 -65.09 317.29 -0.35 -65.44 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.39 Total: 32.42 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.49 Total: -13.00 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -3.82 Total: -90.86 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -3.44 Total: -32.36 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -65.09 -0.35 -65.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164517981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.164 kcal (2) G-P(sol) polarization free energy of solvation -65.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds