Wall clock time and date at job start Tue Mar 31 2020 00:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31489 * 119.81653 * 2 1 4 4 C 1.32742 * 121.73165 * 179.97438 * 3 2 1 5 5 N 1.38368 * 119.42784 * 180.02562 * 4 3 2 6 6 C 1.40443 * 110.99867 * 236.02385 * 5 4 3 7 7 C 1.54281 * 111.68815 * 188.30480 * 6 5 4 8 8 O 1.40630 * 109.12175 * 282.77126 * 7 6 5 9 9 C 1.44086 * 116.72577 * 93.90585 * 8 7 6 10 10 C 1.53614 * 112.55701 * 318.10656 * 9 8 7 11 11 H 1.09004 * 109.03235 * 79.13556 * 10 9 8 12 12 O 1.42899 * 109.03344 * 198.06474 * 10 9 8 13 13 C 1.47634 * 110.99967 * 4.32726 * 5 4 3 14 14 C 1.39717 * 121.13836 * 359.97438 * 4 3 2 15 15 C 1.36553 * 119.49088 * 0.27241 * 14 4 3 16 16 C 1.40762 * 119.81668 * 180.02562 * 2 1 3 17 17 C 1.41199 * 120.56646 * 0.02562 * 16 2 1 18 18 H 1.08003 * 120.00292 * 24.88292 * 17 16 2 19 19 C 1.39864 * 119.99892 * 204.87689 * 17 16 2 20 20 N 1.30909 * 119.99665 * 14.44680 * 19 17 16 21 21 Si 1.86801 * 120.00500 * 194.44183 * 19 17 16 22 22 H 1.48497 * 109.46582 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47061 * 120.00147 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00407 * 21 19 17 25 25 H 1.09001 * 109.47180 * 90.00730 * 1 2 3 26 26 H 1.09004 * 109.47148 * 210.00217 * 1 2 3 27 27 H 1.08995 * 109.47233 * 330.00406 * 1 2 3 28 28 H 1.09005 * 109.03363 * 308.87047 * 6 5 4 29 29 H 1.08997 * 109.03858 * 67.73580 * 6 5 4 30 30 H 1.09000 * 109.52723 * 42.66051 * 7 6 5 31 31 H 1.08995 * 109.52873 * 162.80469 * 7 6 5 32 32 H 1.09000 * 108.86792 * 78.90384 * 9 8 7 33 33 H 1.09000 * 108.86115 * 197.41694 * 9 8 7 34 34 H 0.96703 * 113.99800 * 299.99698 * 12 10 9 35 35 H 1.08998 * 109.58428 * 273.28799 * 13 5 4 36 36 H 1.08994 * 109.58997 * 33.72575 * 13 5 4 37 37 H 1.07993 * 120.25116 * 180.02562 * 14 4 3 38 38 H 1.08004 * 120.79320 * 179.72595 * 15 14 4 39 39 H 0.96999 * 119.99557 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1852 0.0005 5 7 4.1266 2.4124 0.0010 6 6 5.0094 2.5205 -1.0859 7 6 5.8796 3.7907 -0.9895 8 8 5.1114 4.9055 -1.3699 9 6 4.4563 5.6324 -0.3122 10 6 3.8307 4.7050 0.7405 11 1 4.6132 4.3494 1.4109 12 8 2.8681 5.4415 1.4974 13 6 3.1520 3.5165 0.1049 14 6 4.2495 0.0141 0.0016 15 6 3.6199 -1.1976 -0.0035 16 6 2.2069 -1.2213 -0.0005 17 6 1.5091 -2.4488 -0.0016 18 1 0.5047 -2.4987 -0.3956 19 6 2.1186 -3.6001 0.5074 20 7 3.2030 -3.4999 1.2338 21 14 1.3853 -5.2808 0.1508 22 1 0.1694 -5.1226 -0.6869 23 1 2.3804 -6.1114 -0.5737 24 1 1.0234 -5.9443 1.4291 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 5.6587 1.6452 -1.1049 29 1 4.4327 2.5539 -2.0103 30 1 6.2246 3.9190 0.0365 31 1 6.7387 3.6952 -1.6535 32 1 5.1860 6.2783 0.1761 33 1 3.6711 6.2525 -0.7447 34 1 3.2355 6.2039 1.9653 35 1 2.7985 3.7866 -0.8902 36 1 2.3097 3.2036 0.7219 37 1 5.3281 0.0669 0.0024 38 1 4.1882 -2.1160 -0.0072 39 1 3.6255 -4.2984 1.5871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164518635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:58 Heat of formation + Delta-G solvation = -48.314882 kcal Electronic energy + Delta-G solvation = -22115.154869 eV Core-core repulsion = 18830.015526 eV Total energy + Delta-G solvation = -3285.139343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.09416 -38.46940 -36.59431 -36.07057 -33.79529 -31.57279 -30.93201 -30.38082 -27.73717 -27.11575 -26.20609 -24.29608 -22.03496 -21.37937 -20.22231 -19.92333 -17.63481 -17.29159 -16.90373 -16.22152 -15.77747 -15.23165 -15.02830 -14.79373 -14.14854 -13.86509 -13.43740 -13.38242 -12.95753 -12.82792 -12.36196 -11.98619 -11.81339 -11.74259 -11.53930 -11.31221 -11.24324 -11.13643 -11.04338 -10.91722 -10.62024 -10.49725 -9.84998 -9.76235 -9.50695 -9.38079 -8.58013 -8.25984 -8.06133 -7.05525 -6.79255 -4.40065 2.56172 2.91560 3.02110 3.07071 3.12209 3.71232 3.84947 3.98695 4.50642 4.70366 4.79422 5.01416 5.21431 5.30702 5.40613 5.43146 5.57038 5.58522 5.75705 5.88768 6.09241 6.15485 6.21867 6.31173 6.42479 6.54038 6.66052 6.70033 6.80945 6.95506 7.05620 7.26650 7.31554 7.35583 7.61843 7.64168 7.80333 8.01664 8.16285 8.45728 8.68976 8.75701 9.58789 10.07472 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.004393 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.184367 B = 6372.435129 C = 6852.511373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.019 3.981 3 N -0.491 5.491 4 C 0.173 3.827 5 N -0.480 5.480 6 C 0.041 3.959 7 C 0.064 3.936 8 O -0.382 6.382 9 C 0.034 3.966 10 C 0.074 3.926 11 H 0.066 0.934 12 O -0.557 6.557 13 C 0.081 3.919 14 C -0.153 4.153 15 C -0.115 4.115 16 C 0.056 3.944 17 C -0.444 4.444 18 H 0.084 0.916 19 C 0.072 3.928 20 N -0.795 5.795 21 Si 0.911 3.089 22 H -0.259 1.259 23 H -0.272 1.272 24 H -0.274 1.274 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.374 0.626 35 H 0.048 0.952 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 9.721 -1.330 10.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 N -0.204 5.204 4 C -0.057 4.057 5 N -0.200 5.200 6 C -0.088 4.088 7 C -0.014 4.014 8 O -0.301 6.301 9 C -0.042 4.042 10 C 0.014 3.986 11 H 0.084 0.916 12 O -0.361 6.361 13 C -0.046 4.046 14 C -0.176 4.176 15 C -0.141 4.141 16 C 0.052 3.948 17 C -0.474 4.474 18 H 0.102 0.898 19 C -0.146 4.146 20 N -0.420 5.420 21 Si 0.736 3.264 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.199 1.199 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.148 0.852 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.727 10.002 -1.240 10.745 hybrid contribution 0.435 -1.285 -0.116 1.362 sum 4.162 8.717 -1.357 9.754 Atomic orbital electron populations 1.20247 0.91116 1.01172 1.00260 1.20802 0.94878 0.87694 1.08866 1.66682 1.08190 1.31067 1.14417 1.18636 0.88426 0.87899 1.10747 1.56167 1.20190 1.01390 1.42251 1.21800 0.96011 0.98786 0.92198 1.22613 0.93118 0.84887 1.00746 1.87508 1.65984 1.43185 1.33423 1.23692 0.96557 0.93905 0.90089 1.22346 0.91513 0.92068 0.92643 0.91599 1.86626 1.37410 1.45386 1.66646 1.21351 0.94863 0.87724 1.00661 1.20812 0.98296 0.92499 1.05968 1.21369 0.94854 0.96431 1.01463 1.18294 0.92364 0.93123 0.91061 1.19535 1.01400 0.91901 1.34553 0.89776 1.25967 0.94385 1.01612 0.92590 1.69823 1.17125 1.31625 1.23459 0.86199 0.80149 0.80887 0.79196 1.18264 1.19706 1.19889 0.93433 0.91415 0.93310 0.89625 0.94852 0.92224 0.89019 0.93267 0.88919 0.78029 0.93358 0.87457 0.88175 0.85152 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 9.58 36.00 0.34 -1.15 16 2 C 0.02 0.48 6.86 -81.79 -0.56 -0.08 16 3 N -0.49 -12.06 8.17 -8.04 -0.07 -12.13 16 4 C 0.17 4.00 6.36 -155.12 -0.99 3.01 16 5 N -0.48 -9.34 4.09 -177.79 -0.73 -10.06 16 6 C 0.04 0.69 4.97 -6.50 -0.03 0.66 16 7 C 0.06 0.85 6.43 37.83 0.24 1.10 16 8 O -0.38 -5.53 10.13 -34.28 -0.35 -5.87 16 9 C 0.03 0.43 6.32 37.48 0.24 0.66 16 10 C 0.07 1.08 3.02 -27.47 -0.08 0.99 16 11 H 0.07 0.96 7.39 -51.93 -0.38 0.58 16 12 O -0.56 -7.56 13.19 -35.23 -0.46 -8.03 16 13 C 0.08 1.51 4.51 -4.47 -0.02 1.49 16 14 C -0.15 -3.57 9.03 -39.64 -0.36 -3.93 16 15 C -0.12 -2.92 8.73 -39.02 -0.34 -3.26 16 16 C 0.06 1.47 5.59 -106.65 -0.60 0.87 16 17 C -0.44 -11.22 8.16 -37.85 -0.31 -11.53 16 18 H 0.08 2.03 6.84 -52.48 -0.36 1.67 16 19 C 0.07 1.73 5.23 -17.34 -0.09 1.64 16 20 N -0.79 -19.78 10.83 55.54 0.60 -19.18 16 21 Si 0.91 17.95 29.58 -169.99 -5.03 12.92 16 22 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.41 6.76 -51.93 -0.35 1.06 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 1.38 6.36 -51.93 -0.33 1.05 16 29 H 0.03 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.06 0.75 7.10 -51.93 -0.37 0.38 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 34 H 0.37 3.03 9.08 45.56 0.41 3.45 16 35 H 0.05 0.94 7.64 -51.93 -0.40 0.55 16 36 H 0.11 2.32 6.72 -51.93 -0.35 1.97 16 37 H 0.10 2.07 7.07 -52.49 -0.37 1.70 16 38 H 0.13 3.35 6.17 -52.48 -0.32 3.03 16 39 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 LS Contribution 310.28 15.07 4.68 4.68 Total: -1.00 -29.23 310.28 -8.39 -37.63 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.49 Total: 9.58 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.55 Total: -9.52 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.19 Total: -41.37 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.81 Total: -13.90 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.23 -8.39 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164518635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.687 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds