Wall clock time and date at job start Tue Mar 31 2020 00:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31489 * 119.81653 * 2 1 4 4 C 1.32742 * 121.73165 * 179.97438 * 3 2 1 5 5 N 1.38368 * 119.42784 * 180.02562 * 4 3 2 6 6 C 1.40443 * 110.99867 * 236.02385 * 5 4 3 7 7 C 1.54281 * 111.68815 * 188.30480 * 6 5 4 8 8 O 1.40630 * 109.12175 * 282.77126 * 7 6 5 9 9 C 1.44086 * 116.72577 * 93.90585 * 8 7 6 10 10 C 1.53614 * 112.55701 * 318.10656 * 9 8 7 11 11 H 1.09004 * 109.03235 * 79.13556 * 10 9 8 12 12 O 1.42899 * 109.03344 * 198.06474 * 10 9 8 13 13 C 1.47634 * 110.99967 * 4.32726 * 5 4 3 14 14 C 1.39717 * 121.13836 * 359.97438 * 4 3 2 15 15 C 1.36553 * 119.49088 * 0.27241 * 14 4 3 16 16 C 1.40762 * 119.81668 * 180.02562 * 2 1 3 17 17 C 1.41199 * 120.56646 * 0.02562 * 16 2 1 18 18 H 1.08003 * 120.00292 * 24.88292 * 17 16 2 19 19 C 1.39864 * 119.99892 * 204.87689 * 17 16 2 20 20 N 1.30909 * 119.99665 * 14.44680 * 19 17 16 21 21 Si 1.86801 * 120.00500 * 194.44183 * 19 17 16 22 22 H 1.48497 * 109.46582 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47061 * 120.00147 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00407 * 21 19 17 25 25 H 1.09001 * 109.47180 * 90.00730 * 1 2 3 26 26 H 1.09004 * 109.47148 * 210.00217 * 1 2 3 27 27 H 1.08995 * 109.47233 * 330.00406 * 1 2 3 28 28 H 1.09005 * 109.03363 * 308.87047 * 6 5 4 29 29 H 1.08997 * 109.03858 * 67.73580 * 6 5 4 30 30 H 1.09000 * 109.52723 * 42.66051 * 7 6 5 31 31 H 1.08995 * 109.52873 * 162.80469 * 7 6 5 32 32 H 1.09000 * 108.86792 * 78.90384 * 9 8 7 33 33 H 1.09000 * 108.86115 * 197.41694 * 9 8 7 34 34 H 0.96703 * 113.99800 * 299.99698 * 12 10 9 35 35 H 1.08998 * 109.58428 * 273.28799 * 13 5 4 36 36 H 1.08994 * 109.58997 * 33.72575 * 13 5 4 37 37 H 1.07993 * 120.25116 * 180.02562 * 14 4 3 38 38 H 1.08004 * 120.79320 * 179.72595 * 15 14 4 39 39 H 0.96999 * 119.99557 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1852 0.0005 5 7 4.1266 2.4124 0.0010 6 6 5.0094 2.5205 -1.0859 7 6 5.8796 3.7907 -0.9895 8 8 5.1114 4.9055 -1.3699 9 6 4.4563 5.6324 -0.3122 10 6 3.8307 4.7050 0.7405 11 1 4.6132 4.3494 1.4109 12 8 2.8681 5.4415 1.4974 13 6 3.1520 3.5165 0.1049 14 6 4.2495 0.0141 0.0016 15 6 3.6199 -1.1976 -0.0035 16 6 2.2069 -1.2213 -0.0005 17 6 1.5091 -2.4488 -0.0016 18 1 0.5047 -2.4987 -0.3956 19 6 2.1186 -3.6001 0.5074 20 7 3.2030 -3.4999 1.2338 21 14 1.3853 -5.2808 0.1508 22 1 0.1694 -5.1226 -0.6869 23 1 2.3804 -6.1114 -0.5737 24 1 1.0234 -5.9443 1.4291 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 5.6587 1.6452 -1.1049 29 1 4.4327 2.5539 -2.0103 30 1 6.2246 3.9190 0.0365 31 1 6.7387 3.6952 -1.6535 32 1 5.1860 6.2783 0.1761 33 1 3.6711 6.2525 -0.7447 34 1 3.2355 6.2039 1.9653 35 1 2.7985 3.7866 -0.8902 36 1 2.3097 3.2036 0.7219 37 1 5.3281 0.0669 0.0024 38 1 4.1882 -2.1160 -0.0072 39 1 3.6255 -4.2984 1.5871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164518635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:57 Heat of formation + Delta-G solvation = -69.243235 kcal Electronic energy + Delta-G solvation = -22116.062390 eV Core-core repulsion = 18830.015526 eV Total energy + Delta-G solvation = -3286.046865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56708 -40.00958 -37.73078 -37.53218 -35.59850 -33.32967 -32.39991 -31.96690 -29.14046 -28.81667 -27.56045 -25.99528 -23.58579 -22.90693 -21.79076 -21.45124 -19.21919 -18.85017 -18.06785 -17.59868 -17.36955 -16.62315 -16.37624 -16.31691 -15.57518 -15.46263 -14.99463 -14.67153 -14.53595 -14.41484 -13.80677 -13.61919 -13.54362 -13.26199 -13.01440 -12.93922 -12.82219 -12.67268 -12.39842 -12.30639 -12.20607 -11.89742 -11.59563 -11.22646 -10.91726 -10.56479 -10.26993 -10.13040 -9.93785 -8.86408 -8.59653 -6.30324 0.73730 1.03515 1.40787 1.49752 1.55714 2.20227 2.59661 2.71400 2.74196 3.50109 3.60969 3.65959 3.88865 3.92691 4.13097 4.20454 4.30414 4.34807 4.51945 4.53762 4.58834 4.62433 4.82303 4.84052 4.88174 4.94592 4.96648 5.02493 5.10023 5.14395 5.27409 5.47897 5.54220 5.85078 5.93822 6.18668 6.32298 6.39524 6.59548 6.81394 6.84338 6.88821 7.70966 8.29397 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.004393 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.184367 B = 6372.435129 C = 6852.511373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.003 4.003 3 N -0.506 5.506 4 C 0.169 3.831 5 N -0.475 5.475 6 C 0.036 3.964 7 C 0.073 3.927 8 O -0.398 6.398 9 C 0.037 3.963 10 C 0.085 3.915 11 H 0.069 0.931 12 O -0.572 6.572 13 C 0.084 3.916 14 C -0.157 4.157 15 C -0.133 4.133 16 C 0.026 3.974 17 C -0.470 4.470 18 H 0.088 0.912 19 C 0.033 3.967 20 N -0.826 5.826 21 Si 0.986 3.014 22 H -0.255 1.255 23 H -0.265 1.265 24 H -0.267 1.267 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.011 0.989 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.399 0.601 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 10.593 -1.346 11.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.144 4.144 3 N -0.219 5.219 4 C -0.061 4.061 5 N -0.195 5.195 6 C -0.092 4.092 7 C -0.004 4.004 8 O -0.317 6.317 9 C -0.039 4.039 10 C 0.025 3.975 11 H 0.087 0.913 12 O -0.380 6.380 13 C -0.043 4.043 14 C -0.179 4.179 15 C -0.159 4.159 16 C 0.021 3.979 17 C -0.500 4.500 18 H 0.106 0.894 19 C -0.181 4.181 20 N -0.452 5.452 21 Si 0.806 3.194 22 H -0.179 1.179 23 H -0.190 1.190 24 H -0.192 1.192 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.030 0.970 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.250 0.750 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.620 10.921 -1.247 11.923 hybrid contribution 0.190 -1.439 -0.077 1.454 sum 4.810 9.481 -1.324 10.714 Atomic orbital electron populations 1.20220 0.89090 1.01531 1.01185 1.21345 0.96588 0.87636 1.08848 1.66816 1.09022 1.30993 1.15082 1.19130 0.88321 0.89599 1.09063 1.56272 1.19932 1.00152 1.43187 1.21972 0.95668 1.01458 0.90112 1.22646 0.92670 0.82649 1.02461 1.87498 1.66218 1.43338 1.34631 1.23771 0.97520 0.93346 0.89257 1.22081 0.90944 0.91212 0.93287 0.91307 1.86569 1.37805 1.46664 1.67002 1.21276 0.94348 0.89107 0.99537 1.21025 0.99562 0.91962 1.05377 1.21404 0.94979 0.96858 1.02682 1.18650 0.93015 0.94080 0.92112 1.19766 1.01924 0.92586 1.35720 0.89432 1.26813 0.94597 1.05038 0.91701 1.69870 1.18263 1.33110 1.23953 0.85093 0.79376 0.75788 0.79126 1.17854 1.19017 1.19218 0.92129 0.91302 0.92533 0.89135 0.97049 0.90848 0.86023 0.89503 0.88475 0.75032 0.94921 0.90883 0.85785 0.86113 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.71 9.58 71.23 0.68 -2.03 16 2 C 0.00 -0.17 6.86 43.23 0.30 0.13 16 3 N -0.51 -25.57 8.17 -179.36 -1.47 -27.03 16 4 C 0.17 7.98 6.36 133.32 0.85 8.83 16 5 N -0.48 -18.40 4.09 -716.42 -2.93 -21.33 16 6 C 0.04 1.19 4.97 87.91 0.44 1.63 16 7 C 0.07 1.74 6.43 72.42 0.47 2.21 16 8 O -0.40 -10.41 10.13 -145.58 -1.47 -11.89 16 9 C 0.04 0.81 6.32 72.19 0.46 1.27 16 10 C 0.08 2.30 3.02 30.12 0.09 2.39 16 11 H 0.07 1.84 7.39 -2.38 -0.02 1.82 16 12 O -0.57 -14.48 13.19 -148.98 -1.96 -16.45 16 13 C 0.08 3.16 4.51 85.48 0.39 3.54 16 14 C -0.16 -7.43 9.03 22.23 0.20 -7.23 16 15 C -0.13 -6.95 8.73 22.63 0.20 -6.76 16 16 C 0.03 1.40 5.59 -21.18 -0.12 1.28 16 17 C -0.47 -24.30 8.16 23.39 0.19 -24.11 16 18 H 0.09 4.30 6.84 -2.91 -0.02 4.28 16 19 C 0.03 1.62 5.23 85.22 0.45 2.06 16 20 N -0.83 -41.74 10.83 21.82 0.24 -41.50 16 21 Si 0.99 36.65 29.58 68.60 2.03 38.68 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 23 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 25 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.07 2.91 6.76 -2.39 -0.02 2.89 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.09 2.83 6.36 -2.38 -0.02 2.81 16 29 H 0.01 0.42 8.09 -2.39 -0.02 0.40 16 30 H 0.07 1.58 7.10 -2.39 -0.02 1.56 16 31 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 2.03 8.13 -2.39 -0.02 2.01 16 34 H 0.40 5.31 9.08 -74.06 -0.67 4.64 16 35 H 0.03 1.29 7.64 -2.39 -0.02 1.28 16 36 H 0.07 3.23 6.72 -2.39 -0.02 3.22 16 37 H 0.12 5.10 7.07 -2.91 -0.02 5.08 16 38 H 0.12 6.44 6.17 -2.91 -0.02 6.42 16 39 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 Total: -1.00 -65.01 310.28 -0.58 -65.59 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.40 Total: 30.71 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 4.58 Total: -16.79 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -4.16 Total: -89.86 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -3.44 Total: -28.33 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Total: -65.01 -0.58 -65.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164518635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.651 kcal (2) G-P(sol) polarization free energy of solvation -65.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds