Wall clock time and date at job start Tue Mar 31 2020 00:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38688 * 119.27797 * 2 1 4 4 C 1.38010 * 119.62571 * 179.75844 * 3 2 1 5 5 C 1.41010 * 118.27991 * 0.52462 * 4 3 2 6 6 C 1.41011 * 120.70331 * 179.72914 * 5 4 3 7 7 H 1.07999 * 119.99947 * 145.46393 * 6 5 4 8 8 C 1.39955 * 120.00045 * 325.46920 * 6 5 4 9 9 N 1.30865 * 120.00118 * 340.07682 * 8 6 5 10 10 Si 1.86805 * 120.00047 * 160.08353 * 8 6 5 11 11 H 1.48499 * 109.47026 * 269.99756 * 10 8 6 12 12 H 1.48502 * 109.46806 * 29.99768 * 10 8 6 13 13 H 1.48500 * 109.47177 * 149.99523 * 10 8 6 14 14 C 1.41707 * 118.58664 * 359.45967 * 5 4 3 15 15 N 1.38090 * 119.90021 * 180.27707 * 14 5 4 16 16 C 1.47891 * 111.00517 * 64.45995 * 15 14 5 17 17 C 1.54000 * 107.06174 * 214.15555 * 16 15 14 18 18 H 1.08994 * 110.30543 * 242.20742 * 17 16 15 19 19 O 1.42899 * 110.30971 * 120.13865 * 17 16 15 20 20 C 1.54597 * 105.13690 * 1.22382 * 17 16 15 21 21 H 1.08995 * 110.71930 * 263.60174 * 20 17 16 22 22 C 1.52999 * 110.72447 * 140.49214 * 20 17 16 23 23 O 1.42902 * 109.47143 * 174.99664 * 22 20 17 24 24 C 1.48537 * 110.99991 * 307.05927 * 15 14 5 25 25 N 1.31970 * 119.27526 * 180.02562 * 2 1 3 26 26 H 1.09008 * 109.47379 * 269.98437 * 1 2 3 27 27 H 1.09000 * 109.46902 * 29.97834 * 1 2 3 28 28 H 1.08999 * 109.47323 * 149.97938 * 1 2 3 29 29 H 1.07999 * 120.18710 * 0.04308 * 3 2 1 30 30 H 1.07998 * 120.85508 * 180.25447 * 4 3 2 31 31 H 0.97002 * 119.99823 * 354.26447 * 9 8 6 32 32 H 1.09007 * 109.91730 * 333.50396 * 16 15 14 33 33 H 1.09003 * 109.92189 * 94.80065 * 16 15 14 34 34 H 0.96699 * 113.99867 * 61.45410 * 19 17 16 35 35 H 1.08993 * 109.47178 * 294.99939 * 22 20 17 36 36 H 1.09002 * 109.46649 * 55.00210 * 22 20 17 37 37 H 0.96700 * 114.00028 * 180.02562 * 23 22 20 38 38 H 1.08998 * 110.66799 * 278.16135 * 24 15 14 39 39 H 1.09005 * 110.66704 * 41.29120 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2181 0.0051 5 6 4.2409 -0.0196 -0.0013 6 6 5.6501 -0.0706 -0.0023 7 1 6.1621 -0.8627 0.5239 8 6 6.3852 0.9052 -0.6850 9 7 5.8144 1.6177 -1.6226 10 14 8.1812 1.1906 -0.2580 11 1 8.2790 2.2186 0.8092 12 1 8.7839 -0.0793 0.2212 13 1 8.9086 1.6592 -1.4649 14 6 3.4736 -1.2109 -0.0008 15 7 4.1073 -2.4379 -0.0011 16 6 4.8802 -2.6356 1.2442 17 6 6.1331 -3.4508 0.8737 18 1 6.1304 -4.4072 1.3964 19 8 7.3158 -2.7151 1.1933 20 6 6.0345 -3.6710 -0.6533 21 1 5.5948 -4.6435 -0.8750 22 6 7.4103 -3.5386 -1.3095 23 8 7.3088 -3.8609 -2.6980 24 6 5.0934 -2.5273 -1.1083 25 7 2.1523 -1.1512 -0.0005 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6365 2.1399 0.0007 30 1 4.1135 2.1486 0.0093 31 1 4.9081 1.4144 -1.9023 32 1 5.1738 -1.6701 1.6563 33 1 4.2808 -3.1854 1.9700 34 1 7.4089 -2.5093 2.1335 35 1 7.7684 -2.5151 -1.1992 36 1 8.1096 -4.2222 -0.8281 37 1 8.1457 -3.7984 -3.1784 38 1 4.5984 -2.7858 -2.0444 39 1 5.6449 -1.5925 -1.2088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164552603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:28 Heat of formation + Delta-G solvation = -58.056336 kcal Electronic energy + Delta-G solvation = -23064.644193 eV Core-core repulsion = 19779.082429 eV Total energy + Delta-G solvation = -3285.561764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.98353 -38.10084 -36.20244 -35.34968 -34.42223 -31.85165 -30.68959 -29.66231 -27.96491 -27.32114 -24.95811 -23.85652 -21.96569 -21.01210 -20.03376 -19.61372 -18.07510 -17.42270 -16.77110 -15.82064 -15.51810 -14.63531 -14.53058 -14.25494 -14.02822 -13.58617 -13.41174 -13.32504 -12.85752 -12.78786 -12.35720 -12.06278 -11.72851 -11.61953 -11.49973 -11.26666 -11.00132 -10.95145 -10.70221 -10.48061 -10.45135 -10.35881 -9.93481 -9.52326 -9.46963 -9.21066 -8.48259 -8.39935 -7.63269 -7.50833 -7.02378 -4.56542 2.39930 2.70784 3.09878 3.17984 3.29637 3.93366 4.34361 4.46550 4.49561 4.80758 5.07243 5.09659 5.34629 5.53034 5.70419 5.76296 5.86462 5.93394 5.98063 6.13982 6.21669 6.22952 6.31115 6.33020 6.38006 6.43130 6.54283 6.68332 6.77392 6.92717 7.10356 7.29568 7.50875 7.60333 7.66092 7.79105 7.88065 7.90384 7.95519 8.13841 8.58227 8.71791 9.56432 9.95717 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.008915 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.327874 B = 3139.933719 C = 4241.988302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.007 4.007 3 C -0.135 4.135 4 C -0.173 4.173 5 C 0.028 3.972 6 C -0.517 4.517 7 H 0.106 0.894 8 C 0.039 3.961 9 N -0.798 5.798 10 Si 1.060 2.940 11 H -0.277 1.277 12 H -0.264 1.264 13 H -0.278 1.278 14 C 0.171 3.829 15 N -0.452 5.452 16 C 0.011 3.989 17 C 0.105 3.895 18 H 0.061 0.939 19 O -0.555 6.555 20 C -0.079 4.079 21 H 0.087 0.913 22 C 0.096 3.904 23 O -0.576 6.576 24 C 0.032 3.968 25 N -0.440 5.440 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.297 0.703 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.374 0.626 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.373 0.627 38 H 0.065 0.935 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -5.147 3.472 7.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.146 4.146 3 C -0.155 4.155 4 C -0.199 4.199 5 C 0.020 3.980 6 C -0.546 4.546 7 H 0.124 0.876 8 C -0.183 4.183 9 N -0.422 5.422 10 Si 0.883 3.117 11 H -0.202 1.202 12 H -0.189 1.189 13 H -0.203 1.203 14 C -0.063 4.063 15 N -0.173 5.173 16 C -0.117 4.117 17 C 0.045 3.955 18 H 0.079 0.921 19 O -0.361 6.361 20 C -0.098 4.098 21 H 0.105 0.895 22 C 0.018 3.982 23 O -0.381 6.381 24 C -0.095 4.095 25 N -0.149 5.149 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.221 0.779 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.219 0.781 38 H 0.084 0.916 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.041 -5.456 2.553 7.254 hybrid contribution 0.004 0.753 0.936 1.201 sum 4.045 -4.703 3.488 7.117 Atomic orbital electron populations 1.20280 0.91217 1.01071 1.00529 1.20201 0.94955 0.87962 1.11471 1.21428 0.94994 0.97338 1.01773 1.21457 0.93180 0.97832 1.07423 1.18997 0.94996 0.91998 0.91971 1.20804 0.91021 1.12822 1.29913 0.87611 1.27007 1.07427 0.91200 0.92656 1.70444 1.17486 1.34173 1.20050 0.83706 0.72905 0.77837 0.77248 1.20237 1.18857 1.20273 1.19415 0.88380 0.87960 1.10553 1.61041 1.25212 1.29232 1.01856 1.23652 0.93686 1.00378 0.93977 1.22556 0.84482 0.93101 0.95323 0.92149 1.86559 1.42347 1.76925 1.30220 1.22022 0.95296 1.00463 0.92026 0.89468 1.21900 0.96111 0.99791 0.80376 1.86474 1.36896 1.92572 1.22184 1.23634 0.92716 0.99674 0.93466 1.66404 1.09852 1.29261 1.09429 0.93100 0.92819 0.92377 0.88087 0.87178 0.88991 0.90925 0.91402 0.77865 0.92242 0.94088 0.78068 0.91642 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.15 36.00 0.37 -0.97 16 2 C -0.01 -0.15 6.79 -82.37 -0.56 -0.71 16 3 C -0.14 -3.08 9.69 -39.50 -0.38 -3.46 16 4 C -0.17 -4.28 8.02 -38.62 -0.31 -4.59 16 5 C 0.03 0.71 4.62 -106.47 -0.49 0.21 16 6 C -0.52 -12.46 5.02 -37.89 -0.19 -12.65 16 7 H 0.11 2.42 3.36 -52.49 -0.18 2.24 16 8 C 0.04 0.93 5.05 -17.32 -0.09 0.84 16 9 N -0.80 -20.50 12.62 55.55 0.70 -19.79 16 10 Si 1.06 20.79 29.98 -169.99 -5.10 15.69 16 11 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 12 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 13 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 14 C 0.17 4.29 5.85 -155.03 -0.91 3.38 16 15 N -0.45 -10.17 5.34 -168.71 -0.90 -11.08 16 16 C 0.01 0.21 5.66 -2.76 -0.02 0.20 16 17 C 0.10 1.68 4.06 -25.37 -0.10 1.58 16 18 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 19 O -0.56 -8.50 10.42 -35.23 -0.37 -8.87 16 20 C -0.08 -1.40 3.29 -88.76 -0.29 -1.69 16 21 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 22 C 0.10 1.57 5.64 37.16 0.21 1.78 16 23 O -0.58 -9.16 13.60 -35.23 -0.48 -9.64 16 24 C 0.03 0.68 5.39 -1.89 -0.01 0.67 16 25 N -0.44 -11.09 10.28 -8.11 -0.08 -11.17 16 26 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 27 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.11 2.76 7.10 -52.49 -0.37 2.39 16 31 H 0.30 7.95 6.66 -40.82 -0.27 7.68 16 32 H 0.07 1.50 5.30 -51.93 -0.28 1.23 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.37 4.22 9.11 45.56 0.41 4.64 16 35 H 0.06 1.07 7.62 -51.93 -0.40 0.68 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.37 4.06 9.12 45.56 0.42 4.48 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.11 2.59 4.26 -51.93 -0.22 2.37 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -29.99 308.45 -7.83 -37.82 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -3.48 Total: 17.80 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.77 Total: -15.41 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.28 Total: -42.04 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.85 Total: -18.51 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.10 Total: 15.69 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.99 -7.83 -37.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164552603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.234 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds