Wall clock time and date at job start Tue Mar 31 2020 00:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38688 * 119.27797 * 2 1 4 4 C 1.38010 * 119.62571 * 179.75844 * 3 2 1 5 5 C 1.41010 * 118.27991 * 0.52462 * 4 3 2 6 6 C 1.41011 * 120.70331 * 179.72914 * 5 4 3 7 7 H 1.07999 * 119.99947 * 145.46393 * 6 5 4 8 8 C 1.39955 * 120.00045 * 325.46920 * 6 5 4 9 9 N 1.30865 * 120.00118 * 340.07682 * 8 6 5 10 10 Si 1.86805 * 120.00047 * 160.08353 * 8 6 5 11 11 H 1.48499 * 109.47026 * 269.99756 * 10 8 6 12 12 H 1.48502 * 109.46806 * 29.99768 * 10 8 6 13 13 H 1.48500 * 109.47177 * 149.99523 * 10 8 6 14 14 C 1.41707 * 118.58664 * 359.45967 * 5 4 3 15 15 N 1.38090 * 119.90021 * 180.27707 * 14 5 4 16 16 C 1.47891 * 111.00517 * 64.45995 * 15 14 5 17 17 C 1.54000 * 107.06174 * 214.15555 * 16 15 14 18 18 H 1.08994 * 110.30543 * 242.20742 * 17 16 15 19 19 O 1.42899 * 110.30971 * 120.13865 * 17 16 15 20 20 C 1.54597 * 105.13690 * 1.22382 * 17 16 15 21 21 H 1.08995 * 110.71930 * 263.60174 * 20 17 16 22 22 C 1.52999 * 110.72447 * 140.49214 * 20 17 16 23 23 O 1.42902 * 109.47143 * 174.99664 * 22 20 17 24 24 C 1.48537 * 110.99991 * 307.05927 * 15 14 5 25 25 N 1.31970 * 119.27526 * 180.02562 * 2 1 3 26 26 H 1.09008 * 109.47379 * 269.98437 * 1 2 3 27 27 H 1.09000 * 109.46902 * 29.97834 * 1 2 3 28 28 H 1.08999 * 109.47323 * 149.97938 * 1 2 3 29 29 H 1.07999 * 120.18710 * 0.04308 * 3 2 1 30 30 H 1.07998 * 120.85508 * 180.25447 * 4 3 2 31 31 H 0.97002 * 119.99823 * 354.26447 * 9 8 6 32 32 H 1.09007 * 109.91730 * 333.50396 * 16 15 14 33 33 H 1.09003 * 109.92189 * 94.80065 * 16 15 14 34 34 H 0.96699 * 113.99867 * 61.45410 * 19 17 16 35 35 H 1.08993 * 109.47178 * 294.99939 * 22 20 17 36 36 H 1.09002 * 109.46649 * 55.00210 * 22 20 17 37 37 H 0.96700 * 114.00028 * 180.02562 * 23 22 20 38 38 H 1.08998 * 110.66799 * 278.16135 * 24 15 14 39 39 H 1.09005 * 110.66704 * 41.29120 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2181 0.0051 5 6 4.2409 -0.0196 -0.0013 6 6 5.6501 -0.0706 -0.0023 7 1 6.1621 -0.8627 0.5239 8 6 6.3852 0.9052 -0.6850 9 7 5.8144 1.6177 -1.6226 10 14 8.1812 1.1906 -0.2580 11 1 8.2790 2.2186 0.8092 12 1 8.7839 -0.0793 0.2212 13 1 8.9086 1.6592 -1.4649 14 6 3.4736 -1.2109 -0.0008 15 7 4.1073 -2.4379 -0.0011 16 6 4.8802 -2.6356 1.2442 17 6 6.1331 -3.4508 0.8737 18 1 6.1304 -4.4072 1.3964 19 8 7.3158 -2.7151 1.1933 20 6 6.0345 -3.6710 -0.6533 21 1 5.5948 -4.6435 -0.8750 22 6 7.4103 -3.5386 -1.3095 23 8 7.3088 -3.8609 -2.6980 24 6 5.0934 -2.5273 -1.1083 25 7 2.1523 -1.1512 -0.0005 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6365 2.1399 0.0007 30 1 4.1135 2.1486 0.0093 31 1 4.9081 1.4144 -1.9023 32 1 5.1738 -1.6701 1.6563 33 1 4.2808 -3.1854 1.9700 34 1 7.4089 -2.5093 2.1335 35 1 7.7684 -2.5151 -1.1992 36 1 8.1096 -4.2222 -0.8281 37 1 8.1457 -3.7984 -3.1784 38 1 4.5984 -2.7858 -2.0444 39 1 5.6449 -1.5925 -1.2088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164552603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:27 Heat of formation + Delta-G solvation = -82.490991 kcal Electronic energy + Delta-G solvation = -23065.703759 eV Core-core repulsion = 19779.082429 eV Total energy + Delta-G solvation = -3286.621330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64308 -39.70553 -37.47284 -36.79638 -36.20972 -33.38728 -32.53152 -31.23051 -29.52861 -29.02520 -26.53520 -25.48164 -23.56582 -22.84909 -21.72816 -21.02299 -19.89420 -18.72616 -18.04503 -17.46530 -17.19568 -16.35261 -16.04480 -15.74388 -15.59072 -15.23533 -14.84965 -14.80455 -14.46664 -14.27215 -13.96459 -13.66662 -13.43331 -13.24343 -13.01899 -12.83435 -12.64467 -12.55680 -12.27546 -11.97750 -11.88663 -11.68054 -11.52648 -11.04170 -10.92824 -10.72932 -10.31208 -10.28162 -9.45611 -9.37190 -8.84522 -6.44512 0.55845 0.82415 1.49317 1.60634 1.77351 2.30942 2.66653 2.89138 3.23568 3.37511 3.41880 3.67420 3.93465 4.18198 4.21782 4.32100 4.36941 4.46056 4.47423 4.54274 4.59982 4.75374 4.78515 4.84926 4.90144 4.91521 5.04516 5.09798 5.12981 5.17993 5.39166 5.43893 5.66751 5.76796 5.93675 5.97450 6.07142 6.28384 6.74095 6.87414 6.91543 6.96915 7.70118 8.03250 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.008915 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.327874 B = 3139.933719 C = 4241.988302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.014 4.014 3 C -0.139 4.139 4 C -0.191 4.191 5 C 0.004 3.996 6 C -0.521 4.521 7 H 0.117 0.883 8 C 0.005 3.995 9 N -0.825 5.825 10 Si 1.104 2.896 11 H -0.268 1.268 12 H -0.241 1.241 13 H -0.281 1.281 14 C 0.159 3.841 15 N -0.463 5.463 16 C 0.010 3.990 17 C 0.120 3.880 18 H 0.100 0.900 19 O -0.564 6.564 20 C -0.077 4.077 21 H 0.095 0.905 22 C 0.104 3.896 23 O -0.594 6.594 24 C 0.034 3.966 25 N -0.467 5.467 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.277 0.723 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.393 0.607 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.394 0.606 38 H 0.039 0.961 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 -6.290 4.696 9.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.153 4.153 3 C -0.159 4.159 4 C -0.218 4.218 5 C -0.003 4.003 6 C -0.549 4.549 7 H 0.135 0.865 8 C -0.211 4.211 9 N -0.448 5.448 10 Si 0.921 3.079 11 H -0.193 1.193 12 H -0.164 1.164 13 H -0.206 1.206 14 C -0.075 4.075 15 N -0.185 5.185 16 C -0.118 4.118 17 C 0.061 3.939 18 H 0.118 0.882 19 O -0.372 6.372 20 C -0.096 4.096 21 H 0.113 0.887 22 C 0.026 3.974 23 O -0.402 6.402 24 C -0.093 4.093 25 N -0.177 5.177 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.149 0.851 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.244 0.756 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.244 0.756 38 H 0.057 0.943 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.876 -6.609 3.795 9.047 hybrid contribution -0.386 1.098 0.542 1.284 sum 4.490 -5.511 4.337 8.327 Atomic orbital electron populations 1.20352 0.87700 1.02395 1.02134 1.21044 0.97361 0.87440 1.09493 1.21747 0.94432 0.98809 1.00938 1.21535 0.94315 0.97375 1.08534 1.19282 0.95927 0.92368 0.92740 1.20962 0.90794 1.13341 1.29846 0.86544 1.28305 1.10621 0.90495 0.91658 1.70568 1.16632 1.35694 1.21931 0.83198 0.68628 0.78955 0.77110 1.19269 1.16407 1.20630 1.19781 0.88717 0.88916 1.10123 1.61107 1.26008 1.27893 1.03463 1.23760 0.95162 1.00197 0.92640 1.22446 0.83139 0.94075 0.94262 0.88209 1.86511 1.41463 1.77012 1.32237 1.22050 0.95209 0.98840 0.93527 0.88691 1.21786 0.95484 0.99378 0.80782 1.86429 1.39009 1.92461 1.22351 1.23482 0.92907 1.00238 0.92646 1.66538 1.10111 1.30432 1.10634 0.91217 0.90242 0.92314 0.85108 0.88424 0.91064 0.92848 0.90204 0.75639 0.94230 0.91190 0.75616 0.94286 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.35 10.15 71.23 0.72 -1.62 16 2 C -0.01 -0.65 6.79 42.64 0.29 -0.36 16 3 C -0.14 -6.35 9.69 22.32 0.22 -6.14 16 4 C -0.19 -9.75 8.02 22.90 0.18 -9.56 16 5 C 0.00 0.22 4.62 -21.06 -0.10 0.13 16 6 C -0.52 -25.61 5.02 23.37 0.12 -25.49 16 7 H 0.12 5.33 3.36 -2.91 -0.01 5.32 16 8 C 0.00 0.23 5.05 85.25 0.43 0.66 16 9 N -0.82 -43.86 12.62 21.83 0.28 -43.59 16 10 Si 1.10 41.52 29.98 68.60 2.06 43.58 16 11 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 12 H -0.24 -8.10 7.11 99.48 0.71 -7.40 16 13 H -0.28 -10.66 7.11 99.48 0.71 -9.96 16 14 C 0.16 8.11 5.85 134.05 0.78 8.89 16 15 N -0.46 -21.01 5.34 -687.68 -3.67 -24.68 16 16 C 0.01 0.37 5.66 86.45 0.49 0.86 16 17 C 0.12 3.53 4.06 31.48 0.13 3.66 16 18 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 19 O -0.56 -15.56 10.42 -148.98 -1.55 -17.11 16 20 C -0.08 -2.61 3.29 -9.59 -0.03 -2.64 16 21 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 22 C 0.10 3.17 5.64 71.98 0.41 3.57 16 23 O -0.59 -18.02 13.60 -148.98 -2.03 -20.05 16 24 C 0.03 1.50 5.39 86.65 0.47 1.97 16 25 N -0.47 -23.76 10.28 -179.57 -1.85 -25.61 16 26 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 30 H 0.10 5.11 7.10 -2.91 -0.02 5.09 16 31 H 0.28 15.67 6.66 -92.71 -0.62 15.05 16 32 H 0.05 2.19 5.30 -2.38 -0.01 2.18 16 33 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.39 7.56 9.11 -74.06 -0.67 6.88 16 35 H 0.04 1.37 7.62 -2.39 -0.02 1.35 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.39 7.87 9.12 -74.06 -0.68 7.20 16 38 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.08 4.07 4.26 -2.38 -0.01 4.06 16 Total: -1.00 -66.97 308.45 -2.75 -69.73 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: -0.10 Total: 43.81 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 4.11 Total: -26.08 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -5.24 Total: -93.88 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -3.58 Total: -37.16 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.06 Total: 43.58 kcal Total: -66.97 -2.75 -69.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164552603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.763 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds