Wall clock time and date at job start Tue Mar 31 2020 00:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38673 * 119.27649 * 2 1 4 4 C 1.38014 * 119.62581 * 179.97438 * 3 2 1 5 5 C 1.40995 * 118.28122 * 0.02562 * 4 3 2 6 6 C 1.41020 * 120.70324 * 180.02562 * 5 4 3 7 7 H 1.08007 * 119.99615 * 206.75957 * 6 5 4 8 8 C 1.39951 * 120.00380 * 26.75665 * 6 5 4 9 9 N 1.30860 * 120.00147 * 199.17839 * 8 6 5 10 10 Si 1.86799 * 119.99546 * 19.18015 * 8 6 5 11 11 H 1.48497 * 109.47283 * 264.85874 * 10 8 6 12 12 H 1.48502 * 109.47511 * 24.86198 * 10 8 6 13 13 H 1.48504 * 109.47064 * 144.86142 * 10 8 6 14 14 C 1.41701 * 118.59166 * 0.27478 * 5 4 3 15 15 N 1.38092 * 119.90979 * 179.70531 * 14 5 4 16 16 C 1.48564 * 111.00003 * 191.50705 * 15 14 5 17 17 C 1.54384 * 104.59096 * 200.95849 * 16 15 14 18 18 H 1.08992 * 110.32263 * 264.95592 * 17 16 15 19 19 C 1.53001 * 110.32175 * 142.74900 * 17 16 15 20 20 O 1.42895 * 109.47239 * 69.36436 * 19 17 16 21 21 C 1.54263 * 105.06041 * 23.85381 * 17 16 15 22 22 H 1.09007 * 110.40609 * 241.05816 * 21 17 16 23 23 O 1.42898 * 110.32225 * 118.89654 * 21 17 16 24 24 C 1.48562 * 111.00038 * 76.08438 * 15 14 5 25 25 N 1.31974 * 119.27311 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47259 * 90.00010 * 1 2 3 27 27 H 1.09004 * 109.47334 * 209.99708 * 1 2 3 28 28 H 1.08994 * 109.47079 * 329.99527 * 1 2 3 29 29 H 1.07995 * 120.19083 * 0.02562 * 3 2 1 30 30 H 1.08001 * 120.85603 * 180.02562 * 4 3 2 31 31 H 0.97000 * 119.99912 * 180.02562 * 9 8 6 32 32 H 1.08992 * 110.40773 * 319.73334 * 16 15 14 33 33 H 1.08989 * 110.41191 * 82.18266 * 16 15 14 34 34 H 1.09006 * 109.46885 * 189.36339 * 19 17 16 35 35 H 1.09004 * 109.46832 * 309.36092 * 19 17 16 36 36 H 0.96701 * 113.99828 * 180.02562 * 20 19 17 37 37 H 0.96704 * 113.99740 * 182.90335 * 23 21 17 38 38 H 1.08999 * 110.41050 * 277.82392 * 24 15 14 39 39 H 1.09002 * 110.40734 * 40.14392 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2180 0.0005 5 6 4.2408 -0.0195 0.0005 6 6 5.6501 -0.0705 0.0016 7 1 6.1598 -0.9246 -0.4196 8 6 6.3882 0.9854 0.5483 9 7 7.6488 1.1357 0.2310 10 14 5.5737 2.1802 1.7308 11 1 5.0991 3.3716 0.9822 12 1 4.4194 1.5165 2.3884 13 1 6.5553 2.6024 2.7622 14 6 3.4737 -1.2109 -0.0060 15 7 4.1073 -2.4379 -0.0124 16 6 3.1441 -3.5330 -0.2951 17 6 3.8301 -4.8045 0.2493 18 1 4.3661 -5.3170 -0.5495 19 6 2.7950 -5.7379 0.8803 20 8 1.9614 -6.2860 -0.1428 21 6 4.8191 -4.2992 1.3199 22 1 5.8411 -4.5637 1.0483 23 8 4.4888 -4.8459 2.5982 24 6 4.6476 -2.7650 1.3323 25 7 2.1523 -1.1512 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6365 2.1398 0.0004 30 1 4.1135 2.1485 0.0010 31 1 8.1605 1.8674 0.6102 32 1 2.2035 -3.3558 0.2260 33 1 2.9745 -3.6225 -1.3680 34 1 3.3060 -6.5458 1.4043 35 1 2.1826 -5.1770 1.5864 36 1 1.2801 -6.8884 0.1858 37 1 5.0500 -4.5281 3.3188 38 1 5.6098 -2.2761 1.4846 39 1 3.9430 -2.4657 2.1082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164552604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:30 Heat of formation + Delta-G solvation = -82.699535 kcal Electronic energy + Delta-G solvation = -22435.430198 eV Core-core repulsion = 19148.799825 eV Total energy + Delta-G solvation = -3286.630374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43076 -39.79160 -37.44273 -36.84233 -36.04970 -33.70322 -33.20364 -31.24193 -29.66451 -29.13957 -26.61337 -25.28769 -23.84082 -22.98149 -21.86977 -20.82068 -19.35430 -18.74693 -18.18530 -17.62279 -17.54299 -16.57182 -16.33692 -15.70355 -15.44237 -15.35189 -15.12748 -14.78827 -14.51248 -14.29100 -14.21526 -13.71148 -13.67862 -13.39465 -13.08281 -12.95697 -12.86256 -12.48152 -12.34065 -12.11334 -11.99000 -11.79034 -11.66307 -11.32630 -11.10590 -10.77193 -10.43112 -10.19137 -9.88107 -8.97727 -8.95784 -6.44115 0.53115 0.73468 1.21562 1.33784 1.42639 2.05072 2.53779 2.85083 3.22806 3.35064 3.44932 3.62113 3.78064 4.01233 4.16936 4.21932 4.24560 4.37280 4.50209 4.57292 4.60373 4.68244 4.76747 4.84066 4.85919 4.92719 4.95912 4.98133 5.05664 5.15630 5.21233 5.25332 5.45994 5.61622 5.87572 5.99064 6.19052 6.33403 6.70384 6.79844 6.82782 6.95778 7.56579 8.08881 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.007044 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.933081 B = 3974.093133 C = 5145.393621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.007 4.007 3 C -0.134 4.134 4 C -0.222 4.222 5 C 0.033 3.967 6 C -0.433 4.433 7 H 0.073 0.927 8 C 0.053 3.947 9 N -0.827 5.827 10 Si 0.959 3.041 11 H -0.257 1.257 12 H -0.263 1.263 13 H -0.273 1.273 14 C 0.175 3.825 15 N -0.446 5.446 16 C 0.061 3.939 17 C -0.087 4.087 18 H 0.094 0.906 19 C 0.110 3.890 20 O -0.592 6.592 21 C 0.123 3.877 22 H 0.088 0.912 23 O -0.565 6.565 24 C 0.020 3.980 25 N -0.497 5.497 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.112 0.888 31 H 0.297 0.703 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.396 0.604 37 H 0.397 0.603 38 H 0.081 0.919 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 -6.927 5.519 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.144 4.144 3 C -0.154 4.154 4 C -0.248 4.248 5 C 0.027 3.973 6 C -0.462 4.462 7 H 0.091 0.909 8 C -0.165 4.165 9 N -0.452 5.452 10 Si 0.784 3.216 11 H -0.182 1.182 12 H -0.187 1.187 13 H -0.199 1.199 14 C -0.061 4.061 15 N -0.167 5.167 16 C -0.067 4.067 17 C -0.106 4.106 18 H 0.112 0.888 19 C 0.032 3.968 20 O -0.400 6.400 21 C 0.063 3.937 22 H 0.106 0.894 23 O -0.373 6.373 24 C -0.107 4.107 25 N -0.210 5.210 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.158 0.842 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.246 0.754 37 H 0.247 0.753 38 H 0.099 0.901 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.740 -7.506 4.402 11.006 hybrid contribution 0.240 1.547 1.271 2.017 sum -6.499 -5.958 5.673 10.484 Atomic orbital electron populations 1.20367 0.87723 1.02527 1.02098 1.20991 0.97252 0.87606 1.08595 1.21681 0.94019 0.99073 1.00637 1.21427 0.95022 0.96771 1.11572 1.18284 0.94343 0.91282 0.93440 1.19235 0.89814 1.04185 1.32949 0.90869 1.26782 0.95056 0.97888 0.96741 1.69720 1.10029 1.29460 1.35957 0.85590 0.78593 0.78779 0.78663 1.18239 1.18736 1.19932 1.19783 0.87483 0.90873 1.07915 1.62411 1.29520 0.99600 1.25171 1.22836 0.94731 0.88670 1.00444 1.21994 0.96105 0.95177 0.97304 0.88759 1.21716 0.91079 0.95591 0.88433 1.86434 1.50041 1.66724 1.36828 1.22354 0.98196 0.89304 0.83869 0.89442 1.86424 1.62820 1.70514 1.17521 1.23740 1.00560 0.97200 0.89249 1.66929 1.09585 1.30931 1.13588 0.91455 0.92332 0.89931 0.84236 0.87010 0.89221 0.92675 0.92079 0.91519 0.94324 0.75445 0.75293 0.90056 0.94651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.18 10.15 71.24 0.72 -1.45 16 2 C -0.01 -0.30 6.79 42.64 0.29 -0.01 16 3 C -0.13 -5.61 9.69 22.32 0.22 -5.39 16 4 C -0.22 -10.55 7.30 22.89 0.17 -10.38 16 5 C 0.03 1.69 5.14 -21.07 -0.11 1.58 16 6 C -0.43 -23.24 8.05 23.37 0.19 -23.05 16 7 H 0.07 4.27 7.80 -2.91 -0.02 4.25 16 8 C 0.05 2.67 5.42 85.25 0.46 3.14 16 9 N -0.83 -42.65 13.93 21.83 0.30 -42.34 16 10 Si 0.96 40.87 24.48 68.60 1.68 42.55 16 11 H -0.26 -10.36 6.65 99.48 0.66 -9.70 16 12 H -0.26 -11.77 6.83 99.48 0.68 -11.09 16 13 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 14 C 0.17 8.60 5.96 134.05 0.80 9.40 16 15 N -0.45 -19.83 4.73 -686.26 -3.24 -23.07 16 16 C 0.06 2.39 5.51 86.45 0.48 2.87 16 17 C -0.09 -2.74 3.33 -9.90 -0.03 -2.77 16 18 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 19 C 0.11 2.97 5.42 71.98 0.39 3.36 16 20 O -0.59 -15.42 13.55 -148.98 -2.02 -17.44 16 21 C 0.12 3.65 4.40 31.49 0.14 3.79 16 22 H 0.09 2.36 8.14 -2.38 -0.02 2.35 16 23 O -0.56 -14.01 11.54 -148.98 -1.72 -15.73 16 24 C 0.02 0.76 5.71 86.45 0.49 1.26 16 25 N -0.50 -23.25 8.25 -179.58 -1.48 -24.74 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 2.12 8.07 -2.39 -0.02 2.10 16 29 H 0.14 4.72 8.06 -2.91 -0.02 4.69 16 30 H 0.11 5.16 4.47 -2.91 -0.01 5.14 16 31 H 0.30 13.69 8.30 -92.71 -0.77 12.92 16 32 H 0.05 2.32 6.54 -2.39 -0.02 2.30 16 33 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.07 1.60 7.68 -2.38 -0.02 1.58 16 35 H 0.04 1.12 7.90 -2.39 -0.02 1.10 16 36 H 0.40 6.16 9.12 -74.06 -0.68 5.48 16 37 H 0.40 6.71 9.11 -74.05 -0.67 6.03 16 38 H 0.08 3.33 7.32 -2.39 -0.02 3.31 16 39 H 0.04 1.43 7.91 -2.39 -0.02 1.41 16 Total: -1.00 -64.98 312.92 -2.61 -67.59 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.34 Total: 30.84 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 4.20 Total: -17.66 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -4.42 Total: -90.15 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -3.74 Total: -33.17 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.68 Total: 42.55 kcal Total: -64.98 -2.61 -67.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164552604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.107 kcal (2) G-P(sol) polarization free energy of solvation -64.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds