Wall clock time and date at job start Tue Mar 31 2020 00:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31482 * 119.81676 * 2 1 4 4 C 1.32744 * 121.73371 * 180.02562 * 3 2 1 5 5 N 1.38373 * 119.43236 * 179.97438 * 4 3 2 6 6 C 1.47846 * 110.99655 * 120.83809 * 5 4 3 7 7 C 1.54907 * 104.79551 * 213.63780 * 6 5 4 8 8 H 1.09005 * 111.01972 * 278.96966 * 7 6 5 9 9 O 1.42896 * 110.99056 * 155.16539 * 7 6 5 10 10 C 1.55143 * 101.65261 * 37.07121 * 7 6 5 11 11 H 1.08995 * 110.70211 * 82.73171 * 10 7 6 12 12 C 1.52999 * 110.85322 * 205.89596 * 10 7 6 13 13 O 1.42898 * 109.46836 * 180.14300 * 12 10 7 14 14 C 1.47442 * 110.99704 * 0.02562 * 5 4 3 15 15 C 1.39713 * 121.13704 * 359.97077 * 4 3 2 16 16 C 1.36563 * 119.49388 * 0.02562 * 15 4 3 17 17 C 1.40755 * 119.81706 * 179.72238 * 2 1 3 18 18 C 1.41203 * 120.56949 * 0.02562 * 17 2 1 19 19 H 1.08000 * 120.00117 * 24.89720 * 18 17 2 20 20 C 1.39873 * 120.00274 * 204.89859 * 18 17 2 21 21 N 1.30905 * 119.99770 * 14.43109 * 20 18 17 22 22 Si 1.86791 * 120.00317 * 194.42931 * 20 18 17 23 23 H 1.48503 * 109.47111 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47136 * 119.99910 * 22 20 18 25 25 H 1.48496 * 109.47330 * 239.99817 * 22 20 18 26 26 H 1.09006 * 109.47071 * 90.00649 * 1 2 3 27 27 H 1.08998 * 109.47538 * 330.00487 * 1 2 3 28 28 H 1.09003 * 109.47087 * 210.00157 * 1 2 3 29 29 H 1.08996 * 110.37813 * 332.47004 * 6 5 4 30 30 H 1.09004 * 110.37114 * 94.80757 * 6 5 4 31 31 H 0.96701 * 114.00266 * 67.73421 * 9 7 6 32 32 H 1.09002 * 109.46797 * 300.13713 * 12 10 7 33 33 H 1.08996 * 109.47455 * 60.14293 * 12 10 7 34 34 H 0.96697 * 114.00259 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.88258 * 242.66061 * 14 5 4 36 36 H 1.08994 * 109.89211 * 3.68594 * 14 5 4 37 37 H 1.07996 * 120.25370 * 180.02562 * 15 4 3 38 38 H 1.08001 * 120.79781 * 179.97438 * 16 15 4 39 39 H 0.96996 * 120.00046 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1852 -0.0005 5 7 4.1267 2.4124 -0.0010 6 6 4.9994 2.5556 1.1838 7 6 4.9358 4.0613 1.5422 8 1 5.6076 4.6423 0.9103 9 8 5.2287 4.2711 2.9250 10 6 3.4530 4.3951 1.2313 11 1 2.8121 4.1188 2.0685 12 6 3.2880 5.8780 0.8925 13 8 1.9135 6.1530 0.6150 14 6 3.1499 3.5169 -0.0003 15 6 4.2495 0.0142 -0.0005 16 6 3.6199 -1.1977 -0.0004 17 6 2.2068 -1.2212 0.0059 18 6 1.5091 -2.4488 0.0113 19 1 0.5048 -2.5009 -0.3826 20 6 2.1185 -3.5974 0.5268 21 7 3.2028 -3.4933 1.2528 22 14 1.3851 -5.2798 0.1795 23 1 0.1693 -5.1263 -0.6593 24 1 2.3802 -6.1146 -0.5403 25 1 1.0230 -5.9363 1.4613 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 0.8900 0.5137 28 1 -0.3633 -0.8900 0.5139 29 1 4.6208 1.9527 2.0091 30 1 6.0216 2.2665 0.9393 31 1 6.1442 4.0755 3.1673 32 1 3.6160 6.4825 1.7381 33 1 3.8909 6.1200 0.0173 34 1 1.7344 7.0768 0.3921 35 1 3.2563 4.1064 -0.9109 36 1 2.1382 3.1171 0.0664 37 1 5.3281 0.0669 -0.0004 38 1 4.1882 -2.1161 -0.0008 39 1 3.6256 -4.2898 1.6100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164553437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:35 Heat of formation + Delta-G solvation = -59.324271 kcal Electronic energy + Delta-G solvation = -21872.254149 eV Core-core repulsion = 18586.637403 eV Total energy + Delta-G solvation = -3285.616746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83686 -38.14420 -36.53729 -35.75040 -33.89157 -32.15262 -30.94730 -29.98074 -28.00955 -26.83830 -25.53066 -23.86353 -22.02043 -20.95476 -20.07406 -19.82345 -17.60153 -17.30469 -17.11433 -16.18607 -15.59819 -15.19827 -14.67643 -14.48476 -13.91445 -13.78564 -13.45266 -13.27343 -12.75877 -12.62189 -12.32390 -12.21276 -11.86211 -11.63711 -11.51489 -11.32617 -11.24583 -11.04999 -10.89100 -10.76740 -10.58533 -10.24910 -9.99674 -9.89131 -9.77044 -9.42096 -8.62366 -8.19496 -7.94950 -7.07123 -6.81001 -4.39574 2.56094 2.92999 3.02445 3.07348 3.11530 3.85006 3.94572 4.22467 4.52738 4.70336 4.85359 5.00224 5.07042 5.34843 5.39692 5.55708 5.56134 5.77753 5.83677 5.94353 6.09384 6.18583 6.33864 6.44340 6.46878 6.62417 6.64957 6.71701 6.90496 6.95837 7.05418 7.30720 7.36187 7.42692 7.62374 7.65301 7.81595 7.99522 8.17221 8.47023 8.69150 8.77086 9.59116 10.07561 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028553 B = 0.004428 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.412595 B = 6322.065278 C = 6943.988082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.019 3.981 3 N -0.488 5.488 4 C 0.160 3.840 5 N -0.456 5.456 6 C 0.020 3.980 7 C 0.098 3.902 8 H 0.072 0.928 9 O -0.561 6.561 10 C -0.099 4.099 11 H 0.088 0.912 12 C 0.092 3.908 13 O -0.567 6.567 14 C 0.046 3.954 15 C -0.148 4.148 16 C -0.117 4.117 17 C 0.058 3.942 18 C -0.443 4.443 19 H 0.085 0.915 20 C 0.072 3.928 21 N -0.795 5.795 22 Si 0.912 3.088 23 H -0.259 1.259 24 H -0.272 1.272 25 H -0.274 1.274 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.378 0.622 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.375 0.625 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.130 0.870 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 10.599 0.319 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 N -0.201 5.201 4 C -0.071 4.071 5 N -0.177 5.177 6 C -0.108 4.108 7 C 0.039 3.961 8 H 0.090 0.910 9 O -0.366 6.366 10 C -0.118 4.118 11 H 0.107 0.893 12 C 0.014 3.986 13 O -0.372 6.372 14 C -0.082 4.082 15 C -0.170 4.170 16 C -0.143 4.143 17 C 0.053 3.947 18 C -0.473 4.473 19 H 0.103 0.897 20 C -0.146 4.146 21 N -0.421 5.421 22 Si 0.736 3.264 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.199 1.199 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.225 0.775 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.221 0.779 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.148 0.852 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.952 10.780 0.149 11.178 hybrid contribution 0.695 -1.248 0.462 1.502 sum 3.647 9.532 0.611 10.224 Atomic orbital electron populations 1.20255 0.91124 1.01151 1.00336 1.20856 0.94908 0.87623 1.08859 1.66452 1.08408 1.30812 1.14404 1.18909 0.88380 0.89000 1.10770 1.60956 1.19351 1.01268 1.36139 1.23730 0.98600 0.95711 0.92721 1.22955 0.95918 0.95099 0.82150 0.91028 1.86514 1.33988 1.90671 1.25401 1.22295 0.95020 0.94312 1.00211 0.89320 1.22091 0.82653 0.95428 0.98471 1.86558 1.26082 1.32148 1.92414 1.22805 0.99594 0.90485 0.95293 1.20807 0.98332 0.92525 1.05367 1.21370 0.94857 0.96465 1.01632 1.18297 0.92371 0.93096 0.90929 1.19549 1.01477 0.91961 1.34359 0.89730 1.25971 0.94376 1.01637 0.92590 1.69818 1.17117 1.31722 1.23438 0.86190 0.80163 0.80853 0.79174 1.18238 1.19688 1.19910 0.93355 0.93339 0.91391 0.92193 0.90325 0.77492 0.93607 0.93592 0.77878 0.91386 0.87494 0.88337 0.85205 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 9.58 36.00 0.35 -1.18 16 2 C 0.02 0.48 6.86 -81.79 -0.56 -0.08 16 3 N -0.49 -12.11 7.80 -8.04 -0.06 -12.17 16 4 C 0.16 3.77 6.15 -155.12 -0.95 2.81 16 5 N -0.46 -9.10 5.18 -169.95 -0.88 -9.98 16 6 C 0.02 0.34 5.78 -2.30 -0.01 0.33 16 7 C 0.10 1.38 3.88 -24.59 -0.10 1.29 16 8 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 9 O -0.56 -7.39 13.47 -35.23 -0.47 -7.87 16 10 C -0.10 -1.58 2.96 -88.82 -0.26 -1.84 16 11 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 12 C 0.09 1.16 6.37 37.16 0.24 1.40 16 13 O -0.57 -7.44 13.50 -35.23 -0.48 -7.92 16 14 C 0.05 0.85 6.20 -2.86 -0.02 0.83 16 15 C -0.15 -3.53 9.29 -39.64 -0.37 -3.89 16 16 C -0.12 -3.01 8.73 -39.01 -0.34 -3.35 16 17 C 0.06 1.52 5.59 -106.65 -0.60 0.92 16 18 C -0.44 -11.29 8.16 -37.84 -0.31 -11.60 16 19 H 0.08 2.05 6.83 -52.49 -0.36 1.69 16 20 C 0.07 1.74 5.22 -17.34 -0.09 1.65 16 21 N -0.80 -19.88 10.84 55.54 0.60 -19.27 16 22 Si 0.91 18.05 29.58 -169.99 -5.03 13.02 16 23 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.42 6.74 -51.93 -0.35 1.07 16 29 H 0.06 1.16 7.78 -51.93 -0.40 0.76 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.38 3.17 9.12 45.56 0.42 3.58 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.51 8.06 -51.93 -0.42 0.09 16 34 H 0.38 2.87 9.12 45.56 0.42 3.29 16 35 H 0.07 1.19 7.77 -51.93 -0.40 0.79 16 36 H 0.11 2.32 5.87 -51.93 -0.31 2.01 16 37 H 0.10 2.11 7.96 -52.49 -0.42 1.70 16 38 H 0.13 3.38 6.18 -52.49 -0.32 3.06 16 39 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -30.58 318.94 -8.36 -38.94 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -3.82 Total: 13.15 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -3.03 Total: -12.71 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.34 Total: -41.42 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.95 Total: -15.79 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.58 -8.36 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164553437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.383 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds