Wall clock time and date at job start Tue Mar 31 2020 00:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31482 * 119.81676 * 2 1 4 4 C 1.32744 * 121.73371 * 180.02562 * 3 2 1 5 5 N 1.38373 * 119.43236 * 179.97438 * 4 3 2 6 6 C 1.47846 * 110.99655 * 120.83809 * 5 4 3 7 7 C 1.54907 * 104.79551 * 213.63780 * 6 5 4 8 8 H 1.09005 * 111.01972 * 278.96966 * 7 6 5 9 9 O 1.42896 * 110.99056 * 155.16539 * 7 6 5 10 10 C 1.55143 * 101.65261 * 37.07121 * 7 6 5 11 11 H 1.08995 * 110.70211 * 82.73171 * 10 7 6 12 12 C 1.52999 * 110.85322 * 205.89596 * 10 7 6 13 13 O 1.42898 * 109.46836 * 180.14300 * 12 10 7 14 14 C 1.47442 * 110.99704 * 0.02562 * 5 4 3 15 15 C 1.39713 * 121.13704 * 359.97077 * 4 3 2 16 16 C 1.36563 * 119.49388 * 0.02562 * 15 4 3 17 17 C 1.40755 * 119.81706 * 179.72238 * 2 1 3 18 18 C 1.41203 * 120.56949 * 0.02562 * 17 2 1 19 19 H 1.08000 * 120.00117 * 24.89720 * 18 17 2 20 20 C 1.39873 * 120.00274 * 204.89859 * 18 17 2 21 21 N 1.30905 * 119.99770 * 14.43109 * 20 18 17 22 22 Si 1.86791 * 120.00317 * 194.42931 * 20 18 17 23 23 H 1.48503 * 109.47111 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47136 * 119.99910 * 22 20 18 25 25 H 1.48496 * 109.47330 * 239.99817 * 22 20 18 26 26 H 1.09006 * 109.47071 * 90.00649 * 1 2 3 27 27 H 1.08998 * 109.47538 * 330.00487 * 1 2 3 28 28 H 1.09003 * 109.47087 * 210.00157 * 1 2 3 29 29 H 1.08996 * 110.37813 * 332.47004 * 6 5 4 30 30 H 1.09004 * 110.37114 * 94.80757 * 6 5 4 31 31 H 0.96701 * 114.00266 * 67.73421 * 9 7 6 32 32 H 1.09002 * 109.46797 * 300.13713 * 12 10 7 33 33 H 1.08996 * 109.47455 * 60.14293 * 12 10 7 34 34 H 0.96697 * 114.00259 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.88258 * 242.66061 * 14 5 4 36 36 H 1.08994 * 109.89211 * 3.68594 * 14 5 4 37 37 H 1.07996 * 120.25370 * 180.02562 * 15 4 3 38 38 H 1.08001 * 120.79781 * 179.97438 * 16 15 4 39 39 H 0.96996 * 120.00046 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1852 -0.0005 5 7 4.1267 2.4124 -0.0010 6 6 4.9994 2.5556 1.1838 7 6 4.9358 4.0613 1.5422 8 1 5.6076 4.6423 0.9103 9 8 5.2287 4.2711 2.9250 10 6 3.4530 4.3951 1.2313 11 1 2.8121 4.1188 2.0685 12 6 3.2880 5.8780 0.8925 13 8 1.9135 6.1530 0.6150 14 6 3.1499 3.5169 -0.0003 15 6 4.2495 0.0142 -0.0005 16 6 3.6199 -1.1977 -0.0004 17 6 2.2068 -1.2212 0.0059 18 6 1.5091 -2.4488 0.0113 19 1 0.5048 -2.5009 -0.3826 20 6 2.1185 -3.5974 0.5268 21 7 3.2028 -3.4933 1.2528 22 14 1.3851 -5.2798 0.1795 23 1 0.1693 -5.1263 -0.6593 24 1 2.3802 -6.1146 -0.5403 25 1 1.0230 -5.9363 1.4613 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 0.8900 0.5137 28 1 -0.3633 -0.8900 0.5139 29 1 4.6208 1.9527 2.0091 30 1 6.0216 2.2665 0.9393 31 1 6.1442 4.0755 3.1673 32 1 3.6160 6.4825 1.7381 33 1 3.8909 6.1200 0.0173 34 1 1.7344 7.0768 0.3921 35 1 3.2563 4.1064 -0.9109 36 1 2.1382 3.1171 0.0664 37 1 5.3281 0.0669 -0.0004 38 1 4.1882 -2.1161 -0.0008 39 1 3.6256 -4.2898 1.6100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164553437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:34 Heat of formation + Delta-G solvation = -83.780779 kcal Electronic energy + Delta-G solvation = -21873.314663 eV Core-core repulsion = 18586.637403 eV Total energy + Delta-G solvation = -3286.677260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39341 -39.71586 -37.55949 -37.09311 -35.65327 -33.76262 -32.71490 -31.56498 -29.48262 -28.57858 -27.05548 -25.39633 -23.53399 -22.61432 -21.77093 -21.20985 -19.18753 -18.74105 -18.12776 -17.79310 -17.12741 -16.77527 -16.07000 -15.88399 -15.50675 -15.38236 -14.75198 -14.61314 -14.40642 -14.17582 -13.81202 -13.69524 -13.56542 -13.32188 -13.11262 -12.82621 -12.76217 -12.70866 -12.58739 -12.20938 -11.95648 -11.65328 -11.51316 -11.23760 -11.08683 -10.88267 -10.37335 -10.09041 -9.80555 -8.89260 -8.62876 -6.31173 0.72342 1.02291 1.40102 1.48801 1.55341 2.19491 2.60531 2.85302 3.14240 3.41830 3.49003 3.64451 3.89149 4.02938 4.05300 4.27944 4.32112 4.44394 4.51651 4.58713 4.62385 4.70742 4.77768 4.82220 4.92642 4.93431 4.97629 5.11367 5.17842 5.23196 5.29572 5.46619 5.55624 5.72872 5.93126 6.13858 6.32347 6.59013 6.80069 6.83019 6.87983 6.96811 7.69254 8.28384 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028553 B = 0.004428 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.412595 B = 6322.065278 C = 6943.988082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.003 4.003 3 N -0.501 5.501 4 C 0.160 3.840 5 N -0.459 5.459 6 C 0.018 3.982 7 C 0.117 3.883 8 H 0.109 0.891 9 O -0.572 6.572 10 C -0.101 4.101 11 H 0.053 0.947 12 C 0.098 3.902 13 O -0.593 6.593 14 C 0.047 3.953 15 C -0.155 4.155 16 C -0.135 4.135 17 C 0.027 3.973 18 C -0.470 4.470 19 H 0.089 0.911 20 C 0.033 3.967 21 N -0.827 5.827 22 Si 0.987 3.013 23 H -0.254 1.254 24 H -0.265 1.265 25 H -0.267 1.267 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.103 0.897 31 H 0.401 0.599 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.398 0.602 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 11.658 0.105 12.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.144 4.144 3 N -0.214 5.214 4 C -0.072 4.072 5 N -0.180 5.180 6 C -0.110 4.110 7 C 0.058 3.942 8 H 0.126 0.874 9 O -0.380 6.380 10 C -0.120 4.120 11 H 0.072 0.928 12 C 0.020 3.980 13 O -0.402 6.402 14 C -0.080 4.080 15 C -0.177 4.177 16 C -0.162 4.162 17 C 0.023 3.977 18 C -0.500 4.500 19 H 0.107 0.893 20 C -0.182 4.182 21 N -0.453 5.453 22 Si 0.807 3.193 23 H -0.178 1.178 24 H -0.190 1.190 25 H -0.192 1.192 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.121 0.879 31 H 0.251 0.749 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.764 11.880 -0.056 12.462 hybrid contribution 0.511 -1.462 0.563 1.648 sum 4.275 10.417 0.506 11.272 Atomic orbital electron populations 1.20227 0.89039 1.01484 1.01316 1.21415 0.96661 0.87575 1.08777 1.66635 1.09125 1.30675 1.15005 1.19337 0.88284 0.90520 1.09015 1.60926 1.19372 1.00104 1.37565 1.23850 0.98684 0.97921 0.90499 1.22801 0.95247 0.92910 0.83271 0.87360 1.86476 1.36286 1.90436 1.24775 1.22257 0.95881 0.96308 0.97574 0.92820 1.22038 0.82889 0.92888 1.00150 1.86503 1.26534 1.34553 1.92616 1.22748 0.97411 0.90487 0.97352 1.21011 0.99445 0.92152 1.05066 1.21400 0.95044 0.96822 1.02886 1.18653 0.92955 0.94112 0.92016 1.19786 1.02019 0.92632 1.35537 0.89320 1.26834 0.94589 1.05121 0.91682 1.69867 1.18264 1.33218 1.23914 0.85077 0.79400 0.75678 0.79135 1.17766 1.19010 1.19215 0.91942 0.92614 0.91281 0.95414 0.87889 0.74859 0.91947 0.91164 0.75167 0.90064 0.91006 0.86269 0.86220 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.75 9.58 71.23 0.68 -2.07 16 2 C 0.00 -0.17 6.86 43.23 0.30 0.13 16 3 N -0.50 -25.57 7.80 -179.36 -1.40 -26.97 16 4 C 0.16 7.65 6.15 133.31 0.82 8.47 16 5 N -0.46 -18.05 5.18 -691.59 -3.58 -21.63 16 6 C 0.02 0.58 5.78 86.77 0.50 1.08 16 7 C 0.12 2.99 3.88 31.98 0.12 3.11 16 8 H 0.11 2.07 8.05 -2.38 -0.02 2.05 16 9 O -0.57 -13.55 13.47 -148.98 -2.01 -15.55 16 10 C -0.10 -3.08 2.96 -9.63 -0.03 -3.11 16 11 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 12 C 0.10 2.21 6.37 71.98 0.46 2.67 16 13 O -0.59 -14.48 13.50 -148.98 -2.01 -16.49 16 14 C 0.05 1.74 6.20 86.63 0.54 2.28 16 15 C -0.15 -7.51 9.29 22.23 0.21 -7.31 16 16 C -0.14 -7.20 8.73 22.64 0.20 -7.00 16 17 C 0.03 1.48 5.59 -21.18 -0.12 1.36 16 18 C -0.47 -24.50 8.16 23.39 0.19 -24.31 16 19 H 0.09 4.38 6.83 -2.91 -0.02 4.36 16 20 C 0.03 1.59 5.22 85.23 0.45 2.03 16 21 N -0.83 -42.10 10.84 21.82 0.24 -41.86 16 22 Si 0.99 36.93 29.58 68.60 2.03 38.95 16 23 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16 24 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 25 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 26 H 0.06 2.49 8.14 -2.38 -0.02 2.48 16 27 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.07 2.94 6.74 -2.39 -0.02 2.93 16 29 H 0.03 1.07 7.78 -2.39 -0.02 1.06 16 30 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.40 5.41 9.12 -74.06 -0.68 4.73 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.26 8.06 -2.39 -0.02 1.24 16 34 H 0.40 5.15 9.12 -74.06 -0.68 4.47 16 35 H 0.08 2.73 7.77 -2.39 -0.02 2.72 16 36 H 0.07 3.19 5.87 -2.39 -0.01 3.17 16 37 H 0.12 5.12 7.96 -2.91 -0.02 5.09 16 38 H 0.12 6.50 6.18 -2.91 -0.02 6.48 16 39 H 0.29 13.27 8.30 -92.71 -0.77 12.51 16 Total: -1.00 -68.39 318.94 -2.68 -71.07 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.26 Total: 35.15 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 4.31 Total: -22.66 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -4.75 Total: -90.47 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -4.02 Total: -32.05 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.95 kcal Total: -68.39 -2.68 -71.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164553437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.710 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds