Wall clock time and date at job start Tue Mar 31 2020 00:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31489 * 119.81344 * 2 1 4 4 C 1.32744 * 121.73052 * 180.02562 * 3 2 1 5 5 N 1.38369 * 119.43047 * 179.97438 * 4 3 2 6 6 C 1.47849 * 110.99672 * 239.15912 * 5 4 3 7 7 C 1.54906 * 104.79638 * 146.36233 * 6 5 4 8 8 H 1.09006 * 111.02375 * 81.02856 * 7 6 5 9 9 O 1.42894 * 110.99357 * 204.83698 * 7 6 5 10 10 C 1.55148 * 101.65188 * 322.92920 * 7 6 5 11 11 H 1.09001 * 110.69882 * 277.27128 * 10 7 6 12 12 C 1.52997 * 110.70455 * 154.03747 * 10 7 6 13 13 O 1.42899 * 109.47146 * 174.99626 * 12 10 7 14 14 C 1.47451 * 110.99965 * 359.97438 * 5 4 3 15 15 C 1.39711 * 121.13741 * 0.25263 * 4 3 2 16 16 C 1.36562 * 119.49079 * 359.48969 * 15 4 3 17 17 C 1.40753 * 119.81896 * 180.02562 * 2 1 3 18 18 C 1.41197 * 120.56815 * 0.02562 * 17 2 1 19 19 H 1.08001 * 120.00256 * 334.63059 * 18 17 2 20 20 C 1.39877 * 119.99886 * 154.62944 * 18 17 2 21 21 N 1.30901 * 119.99959 * 343.51570 * 20 18 17 22 22 Si 1.86800 * 120.00129 * 163.51594 * 20 18 17 23 23 H 1.48493 * 109.47405 * 94.65981 * 22 20 18 24 24 H 1.48499 * 109.47074 * 214.66390 * 22 20 18 25 25 H 1.48501 * 109.46779 * 334.66089 * 22 20 18 26 26 H 1.09003 * 109.47146 * 90.00449 * 1 2 3 27 27 H 1.09009 * 109.47329 * 210.00101 * 1 2 3 28 28 H 1.08994 * 109.47624 * 330.00110 * 1 2 3 29 29 H 1.08995 * 110.37796 * 27.53226 * 6 5 4 30 30 H 1.09001 * 110.36700 * 265.18853 * 6 5 4 31 31 H 0.96705 * 113.99616 * 292.27052 * 9 7 6 32 32 H 1.09003 * 109.47267 * 294.99513 * 12 10 7 33 33 H 1.08997 * 109.47288 * 54.99859 * 12 10 7 34 34 H 0.96703 * 114.00601 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.88545 * 117.33757 * 14 5 4 36 36 H 1.08995 * 110.02109 * 356.22907 * 14 5 4 37 37 H 1.08002 * 120.24813 * 179.71936 * 15 4 3 38 38 H 1.07998 * 120.78782 * 180.24600 * 16 15 4 39 39 H 0.96996 * 119.99921 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1607 1.1409 0.0000 4 6 3.4874 1.1853 -0.0005 5 7 4.1266 2.4125 -0.0010 6 6 4.9985 2.5552 -1.1865 7 6 4.9346 4.0607 -1.5456 8 1 5.6068 4.6421 -0.9145 9 8 5.2265 4.2699 -2.9287 10 6 3.4519 4.3946 -1.2338 11 1 2.8105 4.1178 -2.0705 12 6 3.2913 5.8778 -0.8945 13 8 1.9049 6.1806 -0.7265 14 6 3.1498 3.5170 -0.0015 15 6 4.2494 0.0143 -0.0063 16 6 3.6198 -1.1975 -0.0010 17 6 2.2068 -1.2212 -0.0005 18 6 1.5091 -2.4487 -0.0016 19 1 0.5074 -2.5009 0.3987 20 6 2.1153 -3.5972 -0.5212 21 7 3.1715 -3.4904 -1.2871 22 14 1.4178 -5.2835 -0.1221 23 1 0.4914 -5.7046 -1.2036 24 1 2.5271 -6.2644 -0.0107 25 1 0.6802 -5.2220 1.1653 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5138 29 1 4.6193 1.9519 -2.0113 30 1 6.0208 2.2663 -0.9425 31 1 6.1418 4.0741 -3.1715 32 1 3.8261 6.0992 0.0292 33 1 3.6996 6.4821 -1.7045 34 1 1.7279 7.1060 -0.5088 35 1 3.2568 4.1070 0.9088 36 1 2.1371 3.1196 -0.0687 37 1 5.3281 0.0672 -0.0112 38 1 4.1883 -2.1158 -0.0014 39 1 3.5917 -4.2868 -1.6477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164553438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:38 Heat of formation + Delta-G solvation = -58.674374 kcal Electronic energy + Delta-G solvation = -21865.570661 eV Core-core repulsion = 18579.982096 eV Total energy + Delta-G solvation = -3285.588564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.84079 -38.14874 -36.53599 -35.75390 -33.88903 -32.16379 -30.96024 -29.99253 -28.01702 -26.83969 -25.52263 -23.86391 -22.02807 -20.96404 -20.07797 -19.83803 -17.61445 -17.30692 -17.11186 -16.19702 -15.58354 -15.20480 -14.66609 -14.48712 -13.92195 -13.78840 -13.48716 -13.27665 -12.76130 -12.64267 -12.32525 -12.22550 -11.90541 -11.62299 -11.50522 -11.30061 -11.22339 -11.09631 -10.88956 -10.77789 -10.58314 -10.27230 -9.99470 -9.88126 -9.76063 -9.40237 -8.63911 -8.19459 -7.95241 -7.09357 -6.82125 -4.38121 2.56862 2.92148 3.02073 3.05500 3.12695 3.85076 3.94640 4.22791 4.53120 4.69746 4.85008 4.99430 5.06040 5.34714 5.40986 5.54369 5.56068 5.76929 5.83323 5.93764 6.09147 6.18274 6.30135 6.42927 6.46019 6.62375 6.65519 6.71404 6.86875 6.97749 7.03260 7.30059 7.34676 7.42215 7.62216 7.65299 7.80238 7.98617 8.16148 8.46971 8.68776 8.76477 9.58541 10.07450 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.004419 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.678252 B = 6335.340681 C = 6951.612789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.020 3.980 3 N -0.488 5.488 4 C 0.159 3.841 5 N -0.456 5.456 6 C 0.020 3.980 7 C 0.098 3.902 8 H 0.072 0.928 9 O -0.561 6.561 10 C -0.099 4.099 11 H 0.089 0.911 12 C 0.091 3.909 13 O -0.568 6.568 14 C 0.045 3.955 15 C -0.147 4.147 16 C -0.118 4.118 17 C 0.060 3.940 18 C -0.446 4.446 19 H 0.085 0.915 20 C 0.074 3.926 21 N -0.794 5.794 22 Si 0.910 3.090 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.259 1.259 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.378 0.622 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.375 0.625 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 10.595 -0.127 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 N -0.201 5.201 4 C -0.071 4.071 5 N -0.177 5.177 6 C -0.108 4.108 7 C 0.039 3.961 8 H 0.090 0.910 9 O -0.366 6.366 10 C -0.118 4.118 11 H 0.108 0.892 12 C 0.013 3.987 13 O -0.373 6.373 14 C -0.083 4.083 15 C -0.169 4.169 16 C -0.144 4.144 17 C 0.056 3.944 18 C -0.476 4.476 19 H 0.103 0.897 20 C -0.144 4.144 21 N -0.420 5.420 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.183 1.183 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.225 0.775 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.221 0.779 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.145 0.855 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.017 10.782 0.030 11.196 hybrid contribution 0.702 -1.273 -0.474 1.529 sum 3.719 9.509 -0.444 10.220 Atomic orbital electron populations 1.20242 0.91111 1.00697 1.00642 1.20865 0.94915 0.87610 1.08829 1.66457 1.08409 1.30806 1.14388 1.18899 0.88366 0.88988 1.10886 1.60959 1.19350 1.01249 1.36100 1.23734 0.98605 0.95734 0.92708 1.22953 0.95957 0.95088 0.82149 0.91031 1.86517 1.33999 1.90675 1.25364 1.22303 0.95042 0.94273 1.00227 0.89223 1.22111 0.82347 0.95285 0.98924 1.86558 1.24835 1.32079 1.93786 1.22829 0.99614 0.90566 0.95250 1.20797 0.98326 0.92515 1.05270 1.21295 0.94800 0.96369 1.01958 1.18267 0.92335 0.93117 0.90731 1.19524 1.01830 0.91988 1.34296 0.89665 1.25949 0.94240 1.01614 0.92617 1.69823 1.17944 1.31934 1.22264 0.86260 0.79471 0.80686 0.80166 1.19471 1.20010 1.18291 0.93016 0.91740 0.93427 0.92189 0.90321 0.77498 0.93532 0.93602 0.77877 0.91399 0.87517 0.88328 0.85485 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 9.79 36.00 0.35 -1.13 16 2 C 0.02 0.49 6.86 -81.79 -0.56 -0.07 16 3 N -0.49 -12.08 7.80 -8.05 -0.06 -12.14 16 4 C 0.16 3.74 6.16 -155.12 -0.96 2.78 16 5 N -0.46 -9.06 5.18 -169.94 -0.88 -9.94 16 6 C 0.02 0.34 5.77 -2.30 -0.01 0.32 16 7 C 0.10 1.38 3.87 -24.59 -0.10 1.29 16 8 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 9 O -0.56 -7.41 13.47 -35.23 -0.47 -7.89 16 10 C -0.10 -1.58 2.94 -88.82 -0.26 -1.84 16 11 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 12 C 0.09 1.16 6.38 37.16 0.24 1.40 16 13 O -0.57 -7.46 13.60 -35.23 -0.48 -7.94 16 14 C 0.04 0.83 6.28 -2.86 -0.02 0.81 16 15 C -0.15 -3.49 9.28 -39.64 -0.37 -3.86 16 16 C -0.12 -3.03 8.73 -39.02 -0.34 -3.37 16 17 C 0.06 1.58 5.58 -106.65 -0.59 0.98 16 18 C -0.45 -11.36 8.47 -37.85 -0.32 -11.68 16 19 H 0.09 2.06 6.26 -52.49 -0.33 1.73 16 20 C 0.07 1.78 5.18 -17.34 -0.09 1.69 16 21 N -0.79 -19.88 10.97 55.54 0.61 -19.28 16 22 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.31 6.25 -51.92 -0.32 0.99 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.16 7.78 -51.93 -0.40 0.76 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.38 3.18 9.12 45.56 0.42 3.59 16 32 H 0.05 0.52 7.93 -51.93 -0.41 0.11 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.38 2.87 9.12 45.56 0.42 3.29 16 35 H 0.07 1.18 7.68 -51.93 -0.40 0.78 16 36 H 0.11 2.30 5.89 -51.93 -0.31 2.00 16 37 H 0.10 2.11 7.95 -52.49 -0.42 1.69 16 38 H 0.13 3.30 6.27 -52.49 -0.33 2.97 16 39 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -30.61 318.52 -8.30 -38.91 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -3.76 Total: 13.15 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.03 Total: -12.67 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -0.33 Total: -41.36 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.95 Total: -15.83 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.61 -8.30 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164553438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.760 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds