Wall clock time and date at job start Tue Mar 31 2020 00:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31489 * 119.81344 * 2 1 4 4 C 1.32744 * 121.73052 * 180.02562 * 3 2 1 5 5 N 1.38369 * 119.43047 * 179.97438 * 4 3 2 6 6 C 1.47849 * 110.99672 * 239.15912 * 5 4 3 7 7 C 1.54906 * 104.79638 * 146.36233 * 6 5 4 8 8 H 1.09006 * 111.02375 * 81.02856 * 7 6 5 9 9 O 1.42894 * 110.99357 * 204.83698 * 7 6 5 10 10 C 1.55148 * 101.65188 * 322.92920 * 7 6 5 11 11 H 1.09001 * 110.69882 * 277.27128 * 10 7 6 12 12 C 1.52997 * 110.70455 * 154.03747 * 10 7 6 13 13 O 1.42899 * 109.47146 * 174.99626 * 12 10 7 14 14 C 1.47451 * 110.99965 * 359.97438 * 5 4 3 15 15 C 1.39711 * 121.13741 * 0.25263 * 4 3 2 16 16 C 1.36562 * 119.49079 * 359.48969 * 15 4 3 17 17 C 1.40753 * 119.81896 * 180.02562 * 2 1 3 18 18 C 1.41197 * 120.56815 * 0.02562 * 17 2 1 19 19 H 1.08001 * 120.00256 * 334.63059 * 18 17 2 20 20 C 1.39877 * 119.99886 * 154.62944 * 18 17 2 21 21 N 1.30901 * 119.99959 * 343.51570 * 20 18 17 22 22 Si 1.86800 * 120.00129 * 163.51594 * 20 18 17 23 23 H 1.48493 * 109.47405 * 94.65981 * 22 20 18 24 24 H 1.48499 * 109.47074 * 214.66390 * 22 20 18 25 25 H 1.48501 * 109.46779 * 334.66089 * 22 20 18 26 26 H 1.09003 * 109.47146 * 90.00449 * 1 2 3 27 27 H 1.09009 * 109.47329 * 210.00101 * 1 2 3 28 28 H 1.08994 * 109.47624 * 330.00110 * 1 2 3 29 29 H 1.08995 * 110.37796 * 27.53226 * 6 5 4 30 30 H 1.09001 * 110.36700 * 265.18853 * 6 5 4 31 31 H 0.96705 * 113.99616 * 292.27052 * 9 7 6 32 32 H 1.09003 * 109.47267 * 294.99513 * 12 10 7 33 33 H 1.08997 * 109.47288 * 54.99859 * 12 10 7 34 34 H 0.96703 * 114.00601 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.88545 * 117.33757 * 14 5 4 36 36 H 1.08995 * 110.02109 * 356.22907 * 14 5 4 37 37 H 1.08002 * 120.24813 * 179.71936 * 15 4 3 38 38 H 1.07998 * 120.78782 * 180.24600 * 16 15 4 39 39 H 0.96996 * 119.99921 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1607 1.1409 0.0000 4 6 3.4874 1.1853 -0.0005 5 7 4.1266 2.4125 -0.0010 6 6 4.9985 2.5552 -1.1865 7 6 4.9346 4.0607 -1.5456 8 1 5.6068 4.6421 -0.9145 9 8 5.2265 4.2699 -2.9287 10 6 3.4519 4.3946 -1.2338 11 1 2.8105 4.1178 -2.0705 12 6 3.2913 5.8778 -0.8945 13 8 1.9049 6.1806 -0.7265 14 6 3.1498 3.5170 -0.0015 15 6 4.2494 0.0143 -0.0063 16 6 3.6198 -1.1975 -0.0010 17 6 2.2068 -1.2212 -0.0005 18 6 1.5091 -2.4487 -0.0016 19 1 0.5074 -2.5009 0.3987 20 6 2.1153 -3.5972 -0.5212 21 7 3.1715 -3.4904 -1.2871 22 14 1.4178 -5.2835 -0.1221 23 1 0.4914 -5.7046 -1.2036 24 1 2.5271 -6.2644 -0.0107 25 1 0.6802 -5.2220 1.1653 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5138 29 1 4.6193 1.9519 -2.0113 30 1 6.0208 2.2663 -0.9425 31 1 6.1418 4.0741 -3.1715 32 1 3.8261 6.0992 0.0292 33 1 3.6996 6.4821 -1.7045 34 1 1.7279 7.1060 -0.5088 35 1 3.2568 4.1070 0.9088 36 1 2.1371 3.1196 -0.0687 37 1 5.3281 0.0672 -0.0112 38 1 4.1883 -2.1158 -0.0014 39 1 3.5917 -4.2868 -1.6477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164553438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:37 Heat of formation + Delta-G solvation = -83.200033 kcal Electronic energy + Delta-G solvation = -21866.634173 eV Core-core repulsion = 18579.982096 eV Total energy + Delta-G solvation = -3286.652077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39542 -39.71852 -37.56054 -37.09381 -35.64997 -33.77254 -32.72751 -31.57459 -29.48637 -28.57831 -27.04770 -25.39271 -23.54088 -22.62043 -21.77363 -21.22196 -19.18982 -18.75202 -18.12683 -17.80167 -17.12411 -16.78389 -16.06236 -15.86078 -15.51754 -15.37778 -14.79037 -14.62180 -14.40748 -14.21885 -13.83107 -13.70048 -13.57701 -13.27049 -13.11181 -12.82180 -12.78000 -12.71248 -12.57891 -12.19311 -11.96639 -11.64848 -11.52723 -11.22074 -11.08113 -10.87850 -10.38473 -10.09204 -9.80609 -8.91110 -8.63887 -6.29624 0.72930 1.01388 1.39917 1.48140 1.55463 2.19425 2.60904 2.85189 3.14337 3.41918 3.48736 3.63199 3.88556 4.02314 4.04726 4.27262 4.33741 4.44109 4.49293 4.58355 4.62186 4.70374 4.77098 4.81770 4.92463 4.93207 4.96897 5.13346 5.17156 5.20123 5.29456 5.46201 5.55556 5.71859 5.91982 6.13276 6.31991 6.59270 6.79908 6.82958 6.87625 6.96567 7.68936 8.28218 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.004419 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.678252 B = 6335.340681 C = 6951.612789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.003 4.003 3 N -0.501 5.501 4 C 0.159 3.841 5 N -0.458 5.458 6 C 0.018 3.982 7 C 0.117 3.883 8 H 0.109 0.891 9 O -0.572 6.572 10 C -0.101 4.101 11 H 0.053 0.947 12 C 0.098 3.902 13 O -0.594 6.594 14 C 0.046 3.954 15 C -0.153 4.153 16 C -0.136 4.136 17 C 0.030 3.970 18 C -0.474 4.474 19 H 0.091 0.909 20 C 0.034 3.966 21 N -0.826 5.826 22 Si 0.985 3.015 23 H -0.263 1.263 24 H -0.268 1.268 25 H -0.256 1.256 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.103 0.897 31 H 0.401 0.599 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.398 0.602 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.501 11.655 0.123 12.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.144 4.144 3 N -0.214 5.214 4 C -0.072 4.072 5 N -0.179 5.179 6 C -0.110 4.110 7 C 0.057 3.943 8 H 0.127 0.873 9 O -0.380 6.380 10 C -0.120 4.120 11 H 0.072 0.928 12 C 0.020 3.980 13 O -0.403 6.403 14 C -0.081 4.081 15 C -0.175 4.175 16 C -0.162 4.162 17 C 0.025 3.975 18 C -0.503 4.503 19 H 0.109 0.891 20 C -0.181 4.181 21 N -0.452 5.452 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.192 1.192 25 H -0.179 1.179 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.121 0.879 31 H 0.251 0.749 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.248 0.752 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.851 11.881 0.270 12.493 hybrid contribution 0.509 -1.482 -0.589 1.675 sum 4.360 10.399 -0.319 11.280 Atomic orbital electron populations 1.20221 0.89033 1.01594 1.01097 1.21423 0.96667 0.87563 1.08760 1.66641 1.09126 1.30670 1.14971 1.19330 0.88270 0.90516 1.09108 1.60931 1.19368 1.00084 1.37503 1.23852 0.98705 0.97921 0.90488 1.22805 0.95292 0.92922 0.83253 0.87327 1.86479 1.36299 1.90446 1.24770 1.22261 0.95883 0.96287 0.97592 0.92822 1.22059 0.82520 0.92767 1.00649 1.86503 1.25295 1.34469 1.94005 1.22783 0.97433 0.90568 0.97334 1.21004 0.99451 0.92138 1.04952 1.21327 0.94983 0.96726 1.03199 1.18624 0.92923 0.94133 0.91799 1.19781 1.02454 0.92658 1.35456 0.89144 1.26812 0.94365 1.05137 0.91755 1.69875 1.19086 1.33410 1.22829 0.85143 0.78839 0.75544 0.79963 1.18781 1.19214 1.17917 0.92667 0.91003 0.92233 0.95442 0.87869 0.74866 0.91148 0.91885 0.75163 0.89932 0.91016 0.86239 0.86503 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.70 9.79 71.23 0.70 -2.00 16 2 C 0.00 -0.16 6.86 43.22 0.30 0.14 16 3 N -0.50 -25.49 7.80 -179.37 -1.40 -26.89 16 4 C 0.16 7.59 6.16 133.32 0.82 8.41 16 5 N -0.46 -17.95 5.18 -691.56 -3.58 -21.53 16 6 C 0.02 0.57 5.77 86.77 0.50 1.07 16 7 C 0.12 2.97 3.87 31.98 0.12 3.10 16 8 H 0.11 2.06 8.05 -2.38 -0.02 2.04 16 9 O -0.57 -13.61 13.47 -148.98 -2.01 -15.62 16 10 C -0.10 -3.08 2.94 -9.63 -0.03 -3.11 16 11 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 12 C 0.10 2.20 6.38 71.98 0.46 2.66 16 13 O -0.59 -14.53 13.60 -148.98 -2.03 -16.55 16 14 C 0.05 1.69 6.28 86.63 0.54 2.23 16 15 C -0.15 -7.43 9.28 22.23 0.21 -7.23 16 16 C -0.14 -7.23 8.73 22.64 0.20 -7.03 16 17 C 0.03 1.62 5.58 -21.18 -0.12 1.50 16 18 C -0.47 -24.68 8.47 23.39 0.20 -24.48 16 19 H 0.09 4.44 6.26 -2.91 -0.02 4.42 16 20 C 0.03 1.68 5.18 85.23 0.44 2.12 16 21 N -0.83 -42.16 10.97 21.82 0.24 -41.92 16 22 Si 0.98 36.89 29.59 68.60 2.03 38.92 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 25 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 2.96 6.25 -2.38 -0.01 2.94 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.03 1.06 7.78 -2.39 -0.02 1.05 16 30 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.40 5.44 9.12 -74.05 -0.68 4.76 16 32 H 0.07 1.27 7.93 -2.39 -0.02 1.25 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.40 5.16 9.12 -74.06 -0.68 4.48 16 35 H 0.08 2.74 7.68 -2.39 -0.02 2.72 16 36 H 0.07 3.17 5.89 -2.39 -0.01 3.15 16 37 H 0.12 5.11 7.95 -2.91 -0.02 5.09 16 38 H 0.12 6.33 6.27 -2.91 -0.02 6.31 16 39 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -68.46 318.52 -2.67 -71.13 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.26 Total: 35.08 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 4.34 Total: -22.61 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -4.75 Total: -90.34 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -4.03 Total: -32.17 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -68.46 -2.67 -71.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164553438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.071 kcal (2) G-P(sol) polarization free energy of solvation -68.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds