Wall clock time and date at job start Tue Mar 31 2020 00:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31489 * 119.80949 * 2 1 4 4 C 1.32745 * 121.72449 * 180.31097 * 3 2 1 5 5 N 1.38374 * 119.42674 * 179.70522 * 4 3 2 6 6 C 1.48558 * 110.99945 * 359.72883 * 5 4 3 7 7 C 1.54385 * 104.59035 * 200.95970 * 6 5 4 8 8 H 1.08996 * 110.32250 * 264.95581 * 7 6 5 9 9 C 1.52995 * 110.32247 * 142.85524 * 7 6 5 10 10 O 1.42902 * 109.47297 * 67.82452 * 9 7 6 11 11 C 1.54251 * 105.06185 * 23.85426 * 7 6 5 12 12 H 1.09008 * 110.32478 * 241.10475 * 11 7 6 13 13 O 1.42901 * 110.32347 * 118.89464 * 11 7 6 14 14 C 1.48564 * 110.99683 * 244.30995 * 5 4 3 15 15 C 1.39702 * 121.13914 * 359.43527 * 4 3 2 16 16 C 1.36564 * 119.49772 * 0.26850 * 15 4 3 17 17 C 1.40748 * 119.81712 * 179.75054 * 2 1 3 18 18 C 1.41203 * 120.57258 * 359.97438 * 17 2 1 19 19 H 1.08003 * 120.00059 * 334.72881 * 18 17 2 20 20 C 1.39869 * 120.00195 * 154.73035 * 18 17 2 21 21 N 1.30903 * 119.99705 * 343.69439 * 20 18 17 22 22 Si 1.86793 * 120.00061 * 163.69786 * 20 18 17 23 23 H 1.48503 * 109.47268 * 94.77778 * 22 20 18 24 24 H 1.48503 * 109.47112 * 214.77239 * 22 20 18 25 25 H 1.48501 * 109.47395 * 334.76957 * 22 20 18 26 26 H 1.09004 * 109.46959 * 270.24948 * 1 2 3 27 27 H 1.09000 * 109.47618 * 30.25565 * 1 2 3 28 28 H 1.09001 * 109.47088 * 150.25645 * 1 2 3 29 29 H 1.08999 * 110.40765 * 82.18270 * 6 5 4 30 30 H 1.08997 * 110.41081 * 319.73440 * 6 5 4 31 31 H 1.08994 * 109.47581 * 187.82679 * 9 7 6 32 32 H 1.09007 * 109.47332 * 307.82476 * 9 7 6 33 33 H 0.96705 * 113.99985 * 179.97438 * 10 9 7 34 34 H 0.96706 * 113.99878 * 179.97438 * 13 11 7 35 35 H 1.09001 * 110.41104 * 277.81687 * 14 5 4 36 36 H 1.08994 * 110.41118 * 40.26677 * 14 5 4 37 37 H 1.08000 * 120.25463 * 180.25597 * 15 4 3 38 38 H 1.07998 * 120.79973 * 179.97438 * 16 15 4 39 39 H 0.97000 * 119.99972 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1409 0.0000 4 6 3.4874 1.1853 -0.0061 5 7 4.1265 2.4125 -0.0120 6 6 3.1424 3.5253 -0.0168 7 6 3.9296 4.7385 -0.5572 8 1 4.3224 5.3328 0.2678 9 6 3.0335 5.5982 -1.4508 10 8 2.0187 6.2147 -0.6556 11 6 5.0858 4.1323 -1.3788 12 1 6.0462 4.4291 -0.9571 13 8 4.9936 4.5439 -2.7441 14 6 4.9000 2.6039 -1.2659 15 6 4.2494 0.0144 -0.0011 16 6 3.6199 -1.1975 0.0048 17 6 2.2069 -1.2211 0.0053 18 6 1.5092 -2.4487 0.0112 19 1 0.5072 -2.4985 0.4111 20 6 2.1158 -3.6004 -0.5008 21 7 3.1746 -3.4984 -1.2637 22 14 1.4149 -5.2838 -0.0961 23 1 0.4938 -5.7103 -1.1801 24 1 2.5229 -6.2650 0.0264 25 1 0.6708 -5.2149 1.1872 26 1 -0.3633 0.0045 1.0277 27 1 -0.3634 0.8877 -0.5178 28 1 -0.3633 -0.8923 -0.5098 29 1 2.7868 3.7227 0.9945 30 1 2.3064 3.2906 -0.6757 31 1 3.6342 6.3686 -1.9342 32 1 2.5682 4.9702 -2.2106 33 1 1.4126 6.7765 -1.1578 34 1 5.6957 4.1931 -3.3090 35 1 5.8679 2.1075 -1.1950 36 1 4.3390 2.2250 -2.1202 37 1 5.3281 0.0672 -0.0020 38 1 4.1883 -2.1158 0.0083 39 1 3.5955 -4.2970 -1.6186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164553440.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:45 Heat of formation + Delta-G solvation = -61.945974 kcal Electronic energy + Delta-G solvation = -21902.334463 eV Core-core repulsion = 18616.604031 eV Total energy + Delta-G solvation = -3285.730432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.81156 -38.21598 -36.38345 -35.72230 -33.90258 -32.10663 -30.95008 -29.92619 -28.00327 -26.87068 -25.49901 -23.89524 -22.21338 -20.86908 -20.21929 -19.36335 -17.70255 -17.34277 -16.98180 -16.22416 -15.45480 -15.09214 -14.83865 -14.23772 -14.00891 -13.82137 -13.49107 -13.32491 -12.79461 -12.72923 -12.47207 -11.91567 -11.76840 -11.69818 -11.56826 -11.29977 -11.01472 -10.94760 -10.86698 -10.71668 -10.62279 -10.51689 -10.06634 -9.82082 -9.67130 -9.41975 -8.66860 -8.24197 -8.00943 -7.14272 -6.85021 -4.42492 2.54337 2.91841 3.00361 3.03967 3.11138 3.82867 4.05369 4.26285 4.46196 4.75170 4.88006 4.93247 5.31534 5.42797 5.49274 5.54559 5.70768 5.77290 5.91811 5.96371 6.11149 6.18416 6.30771 6.40775 6.44654 6.60229 6.64210 6.71417 6.78985 6.93069 7.01497 7.23460 7.30930 7.35094 7.60665 7.74572 7.78076 7.95741 8.15177 8.44674 8.66041 8.75125 9.58428 10.03960 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.004366 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.169709 B = 6411.046269 C = 6977.982573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.016 3.984 3 N -0.485 5.485 4 C 0.150 3.850 5 N -0.441 5.441 6 C 0.063 3.937 7 C -0.089 4.089 8 H 0.088 0.912 9 C 0.098 3.902 10 O -0.576 6.576 11 C 0.107 3.893 12 H 0.069 0.931 13 O -0.565 6.565 14 C 0.008 3.992 15 C -0.143 4.143 16 C -0.121 4.121 17 C 0.061 3.939 18 C -0.444 4.444 19 H 0.085 0.915 20 C 0.073 3.927 21 N -0.793 5.793 22 Si 0.911 3.089 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.259 1.259 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.375 0.625 34 H 0.378 0.622 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 9.433 -2.518 10.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.126 4.126 3 N -0.197 5.197 4 C -0.081 4.081 5 N -0.162 5.162 6 C -0.065 4.065 7 C -0.108 4.108 8 H 0.106 0.894 9 C 0.020 3.980 10 O -0.381 6.381 11 C 0.047 3.953 12 H 0.087 0.913 13 O -0.370 6.370 14 C -0.120 4.120 15 C -0.165 4.165 16 C -0.146 4.146 17 C 0.056 3.944 18 C -0.474 4.474 19 H 0.103 0.897 20 C -0.145 4.145 21 N -0.418 5.418 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.183 1.183 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.221 0.779 34 H 0.225 0.775 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.145 0.855 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.684 10.054 -1.483 10.512 hybrid contribution 0.179 -1.785 -1.201 2.159 sum 2.864 8.269 -2.685 9.154 Atomic orbital electron populations 1.20242 0.91155 1.01065 1.00301 1.20864 0.94922 0.87654 1.09206 1.66698 1.08424 1.31062 1.13545 1.18939 0.88322 0.89060 1.11740 1.62824 1.21308 1.01047 1.31044 1.22816 0.94145 0.87446 1.02054 1.22021 0.94571 0.96904 0.97353 0.89365 1.21869 0.88753 0.95102 0.92243 1.86483 1.45250 1.67220 1.39114 1.22560 0.97940 0.93022 0.81769 0.91267 1.86504 1.55199 1.75313 1.19961 1.23884 0.99633 0.95469 0.93045 1.20811 0.98353 0.92522 1.04801 1.21306 0.94808 0.96380 1.02155 1.18297 0.92360 0.93119 0.90580 1.19520 1.01698 0.91845 1.34321 0.89725 1.25973 0.94253 1.01705 0.92545 1.69824 1.17763 1.31892 1.22292 0.86248 0.79503 0.80576 0.80200 1.19441 1.19976 1.18253 0.93397 0.93419 0.91429 0.90331 0.91433 0.93363 0.93281 0.77875 0.77506 0.90136 0.92636 0.88321 0.85466 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 9.58 36.01 0.34 -1.15 16 2 C 0.02 0.40 6.86 -81.79 -0.56 -0.17 16 3 N -0.49 -12.01 8.28 -8.04 -0.07 -12.08 16 4 C 0.15 3.52 6.16 -155.12 -0.96 2.57 16 5 N -0.44 -8.81 5.38 -168.70 -0.91 -9.72 16 6 C 0.06 1.19 5.31 -2.18 -0.01 1.18 16 7 C -0.09 -1.35 3.33 -89.24 -0.30 -1.65 16 8 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 9 C 0.10 1.37 5.40 37.16 0.20 1.57 16 10 O -0.58 -7.86 13.52 -35.23 -0.48 -8.33 16 11 C 0.11 1.45 4.40 -25.35 -0.11 1.33 16 12 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 13 O -0.56 -6.86 11.55 -35.23 -0.41 -7.27 16 14 C 0.01 0.13 5.76 -2.18 -0.01 0.11 16 15 C -0.14 -3.39 9.42 -39.64 -0.37 -3.76 16 16 C -0.12 -3.08 8.73 -39.01 -0.34 -3.42 16 17 C 0.06 1.60 5.58 -106.65 -0.59 1.00 16 18 C -0.44 -11.24 8.14 -37.85 -0.31 -11.54 16 19 H 0.08 2.04 6.86 -52.48 -0.36 1.68 16 20 C 0.07 1.76 5.19 -17.34 -0.09 1.67 16 21 N -0.79 -19.64 10.95 55.54 0.61 -19.03 16 22 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.40 6.76 -51.93 -0.35 1.05 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.07 1.42 6.76 -51.93 -0.35 1.07 16 31 H 0.05 0.61 7.75 -51.93 -0.40 0.21 16 32 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 33 H 0.38 3.27 9.12 45.56 0.42 3.68 16 34 H 0.38 2.99 9.12 45.56 0.42 3.41 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.03 7.91 -51.93 -0.41 0.62 16 37 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.13 3.29 6.26 -52.49 -0.33 2.96 16 39 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 318.09 15.07 4.79 4.79 Total: -1.00 -30.01 318.09 -8.47 -38.48 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -3.88 Total: 12.56 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.11 Total: -12.26 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.37 Total: -40.83 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.88 Total: -15.60 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.01 -8.47 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164553440.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.466 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds