Wall clock time and date at job start Tue Mar 31 2020 00:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00105 * 2 1 4 4 O 1.20823 * 119.99875 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00239 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.46825 * 31.95626 * 5 3 2 7 7 C 1.52997 * 109.46968 * 271.95646 * 5 3 2 8 8 N 1.46902 * 109.47042 * 151.95594 * 5 3 2 9 9 C 1.46903 * 111.00009 * 299.43715 * 8 5 3 10 10 C 1.38088 * 110.99637 * 175.48714 * 8 5 3 11 11 N 1.32267 * 119.90925 * 60.66858 * 10 8 5 12 12 C 1.31972 * 121.86692 * 180.24638 * 11 10 8 13 13 C 1.50695 * 119.27919 * 179.75273 * 12 11 10 14 14 C 1.38683 * 121.44480 * 359.46889 * 12 11 10 15 15 C 1.38012 * 119.62737 * 0.26331 * 14 12 11 16 16 C 1.40999 * 118.28133 * 359.97438 * 15 14 12 17 17 C 1.41016 * 120.70673 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00164 * 155.39977 * 17 16 15 19 19 C 1.39947 * 119.99834 * 335.39592 * 17 16 15 20 20 N 1.30873 * 120.00087 * 346.45515 * 19 17 16 21 21 Si 1.86803 * 120.00200 * 166.45070 * 19 17 16 22 22 H 1.48499 * 109.46774 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47017 * 120.00076 * 21 19 17 24 24 H 1.48496 * 109.47375 * 240.00303 * 21 19 17 25 25 H 1.09004 * 109.47246 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47033 * 299.99462 * 1 2 3 27 27 H 1.08996 * 109.47619 * 59.99857 * 1 2 3 28 28 H 1.09002 * 109.46966 * 177.60706 * 7 5 3 29 29 H 1.09000 * 109.47342 * 297.60580 * 7 5 3 30 30 H 1.08994 * 109.47515 * 57.60937 * 7 5 3 31 31 H 1.09004 * 109.47022 * 301.82887 * 9 8 5 32 32 H 1.08996 * 109.47079 * 61.82511 * 9 8 5 33 33 H 1.08996 * 109.47187 * 181.83235 * 9 8 5 34 34 H 1.09008 * 109.46869 * 269.72940 * 13 12 11 35 35 H 1.08991 * 109.47427 * 149.72689 * 13 12 11 36 36 H 1.09000 * 109.47073 * 29.72533 * 13 12 11 37 37 H 1.07997 * 120.18405 * 180.27674 * 14 12 11 38 38 H 1.08000 * 120.85569 * 180.02562 * 15 14 12 39 39 H 0.97002 * 119.99949 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9745 0.4233 -0.5448 7 6 4.0787 1.2521 1.4409 8 7 3.9910 2.5214 -0.6517 9 6 3.5272 2.5723 -2.0446 10 6 5.3615 2.6746 -0.5806 11 7 6.1555 1.7744 -1.1361 12 6 7.4701 1.8801 -1.0873 13 6 8.3195 0.8174 -1.7355 14 6 8.0870 2.9507 -0.4575 15 6 7.3161 3.9283 0.1381 16 6 5.9132 3.7993 0.0821 17 6 5.0768 4.7680 0.6740 18 1 4.0669 4.9014 0.3153 19 6 5.5553 5.5566 1.7265 20 7 6.6654 5.2290 2.3374 21 14 4.6097 7.0769 2.2594 22 1 3.3968 7.2263 1.4158 23 1 4.2083 6.9367 3.6823 24 1 5.4720 8.2759 2.1042 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 5.1686 1.2663 1.4393 29 1 3.7048 2.1266 1.9733 30 1 3.7279 0.3472 1.9370 31 1 3.9171 1.7122 -2.5890 32 1 2.4376 2.5521 -2.0657 33 1 3.8828 3.4901 -2.5127 34 1 8.5381 0.0341 -1.0096 35 1 9.2523 1.2603 -2.0841 36 1 7.7823 0.3889 -2.5816 37 1 9.1645 3.0190 -0.4335 38 1 7.7757 4.7707 0.6336 39 1 6.9969 5.7754 3.0671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167114011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:38 Heat of formation + Delta-G solvation = -45.340911 kcal Electronic energy + Delta-G solvation = -22495.681048 eV Core-core repulsion = 19210.670666 eV Total energy + Delta-G solvation = -3285.010382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31673 -38.92821 -36.61445 -35.54551 -34.24345 -31.35536 -30.80798 -29.78590 -27.82191 -27.63250 -25.19600 -24.17863 -23.40862 -21.18566 -20.56494 -19.44753 -17.41259 -17.22980 -16.44517 -16.01120 -15.51675 -15.34989 -14.78349 -14.29842 -13.90332 -13.67681 -13.11799 -13.04101 -12.69579 -12.55655 -12.10871 -12.05922 -11.73027 -11.71740 -11.62519 -11.46931 -11.40644 -11.04241 -10.95027 -10.90884 -10.81914 -10.52910 -10.48288 -9.87397 -9.77828 -9.36491 -8.45891 -8.14821 -7.57075 -7.41586 -6.82775 -4.40755 2.49503 2.61252 2.83083 3.00858 3.06196 3.14589 3.17788 3.89915 4.55135 4.62554 5.13234 5.19821 5.25259 5.46519 5.54252 5.61834 5.67672 5.79397 6.00552 6.07770 6.13486 6.19470 6.32960 6.38529 6.44932 6.46949 6.51634 6.64326 6.82222 6.87090 6.92576 7.08585 7.16404 7.57136 7.59239 7.70264 8.00768 8.19803 8.29091 8.60196 8.69587 8.89671 9.55689 10.05266 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.008041 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.133468 B = 3481.389713 C = 5124.362761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.486 6.486 5 C 0.107 3.893 6 H 0.074 0.926 7 C -0.130 4.130 8 N -0.435 5.435 9 C 0.031 3.969 10 C 0.151 3.849 11 N -0.486 5.486 12 C -0.010 4.010 13 C -0.072 4.072 14 C -0.144 4.144 15 C -0.135 4.135 16 C 0.094 3.906 17 C -0.408 4.408 18 H 0.095 0.905 19 C 0.068 3.932 20 N -0.791 5.791 21 Si 0.912 3.088 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.273 1.273 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.469 -5.876 -1.933 7.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.305 3.695 4 O -0.371 6.371 5 C -0.002 4.002 6 H 0.091 0.909 7 C -0.187 4.187 8 N -0.158 5.158 9 C -0.117 4.117 10 C -0.080 4.080 11 N -0.198 5.198 12 C -0.151 4.151 13 C -0.130 4.130 14 C -0.164 4.164 15 C -0.161 4.161 16 C 0.088 3.912 17 C -0.437 4.437 18 H 0.113 0.887 19 C -0.150 4.150 20 N -0.416 5.416 21 Si 0.736 3.264 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.198 1.198 25 H 0.114 0.886 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.150 0.850 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.164 -5.802 -1.895 7.995 hybrid contribution 0.175 0.807 0.359 0.900 sum -4.989 -4.995 -1.535 7.225 Atomic orbital electron populations 1.23171 0.77232 1.03092 1.02333 1.86537 1.22767 1.34331 1.84663 1.24025 0.92180 0.81027 0.72297 1.90637 1.66738 1.36096 1.43614 1.21180 0.85549 0.94311 0.99158 0.90871 1.21644 1.02929 1.01878 0.92297 1.59278 1.09797 1.31522 1.15245 1.22375 0.99466 1.01156 0.88732 1.19046 0.86209 0.94526 1.08193 1.66699 1.05857 1.29808 1.17441 1.19969 0.89254 0.98528 1.07302 1.20263 0.97252 0.96460 0.99018 1.21442 0.98606 0.96324 1.00037 1.21759 0.93523 0.99529 1.01274 1.18068 0.92165 0.90704 0.90278 1.19690 1.00267 1.11996 1.11702 0.88697 1.26090 0.94800 0.98457 0.95623 1.69811 1.19167 1.35420 1.17181 0.86176 0.80673 0.80476 0.79083 1.17958 1.19904 1.19781 0.88556 0.92114 0.92204 0.90474 0.90736 0.92623 0.95389 0.92370 0.91402 0.93382 0.93063 0.92921 0.88457 0.84978 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.79 10.57 -39.25 -0.41 -6.20 16 3 C 0.46 8.65 6.15 36.01 0.22 8.88 16 4 O -0.49 -10.16 15.35 -18.75 -0.29 -10.44 16 5 C 0.11 2.13 2.39 -68.86 -0.16 1.97 16 6 H 0.07 1.45 7.97 -51.93 -0.41 1.03 16 7 C -0.13 -2.54 8.91 37.16 0.33 -2.21 16 8 N -0.44 -9.66 3.53 -174.24 -0.62 -10.27 16 9 C 0.03 0.61 9.01 60.07 0.54 1.15 16 10 C 0.15 3.63 3.76 -155.03 -0.58 3.04 16 11 N -0.49 -11.33 9.57 -8.11 -0.08 -11.41 16 12 C -0.01 -0.21 6.79 -82.37 -0.56 -0.77 16 13 C -0.07 -1.27 10.15 36.00 0.37 -0.91 16 14 C -0.14 -3.23 9.69 -39.50 -0.38 -3.62 16 15 C -0.13 -3.33 8.79 -38.62 -0.34 -3.67 16 16 C 0.09 2.40 5.61 -106.47 -0.60 1.80 16 17 C -0.41 -10.42 8.72 -37.89 -0.33 -10.75 16 18 H 0.09 2.49 7.58 -52.49 -0.40 2.09 16 19 C 0.07 1.64 5.25 -17.32 -0.09 1.55 16 20 N -0.79 -19.30 10.76 55.55 0.60 -18.70 16 21 Si 0.91 18.50 29.58 -169.99 -5.03 13.47 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 28 H 0.08 1.67 7.21 -51.93 -0.37 1.30 16 29 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 32 H 0.06 1.10 6.49 -51.93 -0.34 0.77 16 33 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.13 3.34 6.11 -52.49 -0.32 3.01 16 39 H 0.28 6.26 8.30 -40.82 -0.34 5.93 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -28.13 329.37 -7.00 -35.13 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.62 Total: 5.51 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.52 Total: -2.04 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -0.10 Total: -40.38 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.70 Total: -16.65 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.13 -7.00 -35.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167114011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.213 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds