Wall clock time and date at job start Tue Mar 31 2020 00:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00105 * 2 1 4 4 O 1.20823 * 119.99875 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00239 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.46825 * 31.95626 * 5 3 2 7 7 C 1.52997 * 109.46968 * 271.95646 * 5 3 2 8 8 N 1.46902 * 109.47042 * 151.95594 * 5 3 2 9 9 C 1.46903 * 111.00009 * 299.43715 * 8 5 3 10 10 C 1.38088 * 110.99637 * 175.48714 * 8 5 3 11 11 N 1.32267 * 119.90925 * 60.66858 * 10 8 5 12 12 C 1.31972 * 121.86692 * 180.24638 * 11 10 8 13 13 C 1.50695 * 119.27919 * 179.75273 * 12 11 10 14 14 C 1.38683 * 121.44480 * 359.46889 * 12 11 10 15 15 C 1.38012 * 119.62737 * 0.26331 * 14 12 11 16 16 C 1.40999 * 118.28133 * 359.97438 * 15 14 12 17 17 C 1.41016 * 120.70673 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00164 * 155.39977 * 17 16 15 19 19 C 1.39947 * 119.99834 * 335.39592 * 17 16 15 20 20 N 1.30873 * 120.00087 * 346.45515 * 19 17 16 21 21 Si 1.86803 * 120.00200 * 166.45070 * 19 17 16 22 22 H 1.48499 * 109.46774 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47017 * 120.00076 * 21 19 17 24 24 H 1.48496 * 109.47375 * 240.00303 * 21 19 17 25 25 H 1.09004 * 109.47246 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47033 * 299.99462 * 1 2 3 27 27 H 1.08996 * 109.47619 * 59.99857 * 1 2 3 28 28 H 1.09002 * 109.46966 * 177.60706 * 7 5 3 29 29 H 1.09000 * 109.47342 * 297.60580 * 7 5 3 30 30 H 1.08994 * 109.47515 * 57.60937 * 7 5 3 31 31 H 1.09004 * 109.47022 * 301.82887 * 9 8 5 32 32 H 1.08996 * 109.47079 * 61.82511 * 9 8 5 33 33 H 1.08996 * 109.47187 * 181.83235 * 9 8 5 34 34 H 1.09008 * 109.46869 * 269.72940 * 13 12 11 35 35 H 1.08991 * 109.47427 * 149.72689 * 13 12 11 36 36 H 1.09000 * 109.47073 * 29.72533 * 13 12 11 37 37 H 1.07997 * 120.18405 * 180.27674 * 14 12 11 38 38 H 1.08000 * 120.85569 * 180.02562 * 15 14 12 39 39 H 0.97002 * 119.99949 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9745 0.4233 -0.5448 7 6 4.0787 1.2521 1.4409 8 7 3.9910 2.5214 -0.6517 9 6 3.5272 2.5723 -2.0446 10 6 5.3615 2.6746 -0.5806 11 7 6.1555 1.7744 -1.1361 12 6 7.4701 1.8801 -1.0873 13 6 8.3195 0.8174 -1.7355 14 6 8.0870 2.9507 -0.4575 15 6 7.3161 3.9283 0.1381 16 6 5.9132 3.7993 0.0821 17 6 5.0768 4.7680 0.6740 18 1 4.0669 4.9014 0.3153 19 6 5.5553 5.5566 1.7265 20 7 6.6654 5.2290 2.3374 21 14 4.6097 7.0769 2.2594 22 1 3.3968 7.2263 1.4158 23 1 4.2083 6.9367 3.6823 24 1 5.4720 8.2759 2.1042 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 5.1686 1.2663 1.4393 29 1 3.7048 2.1266 1.9733 30 1 3.7279 0.3472 1.9370 31 1 3.9171 1.7122 -2.5890 32 1 2.4376 2.5521 -2.0657 33 1 3.8828 3.4901 -2.5127 34 1 8.5381 0.0341 -1.0096 35 1 9.2523 1.2603 -2.0841 36 1 7.7823 0.3889 -2.5816 37 1 9.1645 3.0190 -0.4335 38 1 7.7757 4.7707 0.6336 39 1 6.9969 5.7754 3.0671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167114011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:37 Heat of formation + Delta-G solvation = -60.898719 kcal Electronic energy + Delta-G solvation = -22496.355686 eV Core-core repulsion = 19210.670666 eV Total energy + Delta-G solvation = -3285.685019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80579 -40.62955 -38.14227 -37.09112 -36.05434 -33.00310 -32.57202 -31.48972 -29.48892 -28.77458 -26.87609 -25.77191 -25.07076 -22.86913 -22.26252 -21.04757 -19.17683 -18.78547 -17.91037 -17.43821 -17.24561 -16.95448 -16.45804 -15.90140 -15.61400 -15.08739 -14.64096 -14.53442 -14.25083 -14.17054 -13.79507 -13.43751 -13.33905 -13.28015 -13.15814 -13.01816 -12.92640 -12.64716 -12.59073 -12.55467 -12.42718 -12.15937 -11.77541 -11.63945 -11.37003 -11.14793 -10.24797 -9.98175 -9.29402 -9.21576 -8.62111 -6.29642 0.73033 1.04096 1.12656 1.39121 1.50439 1.53316 1.63509 2.21587 2.74224 2.99480 3.64231 3.76694 3.99880 4.05813 4.17701 4.32447 4.34172 4.37336 4.49257 4.58115 4.63845 4.68498 4.68772 4.81630 4.84395 4.99865 5.03410 5.09630 5.15407 5.19201 5.30358 5.33202 5.37373 5.76331 5.88177 5.98221 6.18239 6.41493 6.73129 6.77231 6.83353 7.07715 7.73523 8.28098 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.008041 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.133468 B = 3481.389713 C = 5124.362761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.513 6.513 5 C 0.106 3.894 6 H 0.078 0.922 7 C -0.119 4.119 8 N -0.455 5.455 9 C 0.039 3.961 10 C 0.153 3.847 11 N -0.496 5.496 12 C -0.012 4.012 13 C -0.067 4.067 14 C -0.147 4.147 15 C -0.154 4.154 16 C 0.066 3.934 17 C -0.436 4.436 18 H 0.077 0.923 19 C 0.036 3.964 20 N -0.816 5.816 21 Si 0.974 3.026 22 H -0.265 1.265 23 H -0.267 1.267 24 H -0.260 1.260 25 H 0.137 0.863 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 -7.190 -2.192 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.401 6.401 5 C -0.003 4.003 6 H 0.095 0.905 7 C -0.176 4.176 8 N -0.178 5.178 9 C -0.108 4.108 10 C -0.077 4.077 11 N -0.208 5.208 12 C -0.153 4.153 13 C -0.125 4.125 14 C -0.167 4.167 15 C -0.180 4.180 16 C 0.060 3.940 17 C -0.465 4.465 18 H 0.095 0.905 19 C -0.179 4.179 20 N -0.442 5.442 21 Si 0.796 3.204 22 H -0.189 1.189 23 H -0.192 1.192 24 H -0.185 1.185 25 H 0.155 0.845 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.370 -7.148 -2.161 9.198 hybrid contribution 0.240 1.044 0.379 1.136 sum -5.130 -6.104 -1.782 8.170 Atomic orbital electron populations 1.23588 0.74530 1.05875 1.02559 1.86505 1.25250 1.32296 1.83875 1.23610 0.91534 0.81484 0.71735 1.90629 1.67159 1.37201 1.45069 1.21144 0.86933 0.93342 0.98860 0.90459 1.21521 1.01114 1.02484 0.92515 1.59214 1.09082 1.33105 1.16398 1.22295 0.99871 1.00875 0.87801 1.19159 0.87118 0.94077 1.07368 1.66848 1.06486 1.29620 1.17832 1.20804 0.89424 0.99132 1.05925 1.20320 0.97430 0.95526 0.99215 1.21751 0.99994 0.95733 0.99266 1.21779 0.93679 1.00207 1.02372 1.18370 0.92817 0.91586 0.91224 1.19627 0.99740 1.13883 1.13289 0.90525 1.26709 0.95630 1.00489 0.95111 1.69829 1.20189 1.36455 1.17723 0.85255 0.79108 0.77488 0.78555 1.18931 1.19189 1.18463 0.84495 0.92018 0.91961 0.92992 0.92921 0.89281 0.94818 0.91480 0.92327 0.91884 0.90588 0.92348 0.85661 0.86150 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.36 -10.72 10.57 -51.40 -0.54 -11.26 16 3 C 0.47 17.30 6.15 71.24 0.44 17.74 16 4 O -0.51 -21.32 15.35 21.97 0.34 -20.99 16 5 C 0.11 4.20 2.39 44.17 0.11 4.31 16 6 H 0.08 2.99 7.97 -2.39 -0.02 2.97 16 7 C -0.12 -4.68 8.91 71.98 0.64 -4.03 16 8 N -0.45 -20.47 3.53 -705.17 -2.49 -22.96 16 9 C 0.04 1.57 9.01 127.69 1.15 2.72 16 10 C 0.15 7.47 3.76 134.05 0.50 7.98 16 11 N -0.50 -22.88 9.57 -179.57 -1.72 -24.60 16 12 C -0.01 -0.51 6.79 42.64 0.29 -0.22 16 13 C -0.07 -2.17 10.15 71.23 0.72 -1.45 16 14 C -0.15 -6.53 9.69 22.32 0.22 -6.31 16 15 C -0.15 -7.77 8.79 22.89 0.20 -7.57 16 16 C 0.07 3.48 5.61 -21.06 -0.12 3.36 16 17 C -0.44 -23.21 8.72 23.37 0.20 -23.01 16 18 H 0.08 4.23 7.58 -2.91 -0.02 4.21 16 19 C 0.04 1.78 5.25 85.25 0.45 2.23 16 20 N -0.82 -40.77 10.76 21.83 0.23 -40.54 16 21 Si 0.97 38.68 29.58 68.60 2.03 40.71 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 25 H 0.14 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.06 1.30 8.13 -2.38 -0.02 1.28 16 27 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.05 2.29 7.21 -2.39 -0.02 2.27 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.03 1.29 8.04 -2.38 -0.02 1.27 16 32 H 0.07 2.54 6.49 -2.39 -0.02 2.53 16 33 H 0.06 2.41 8.10 -2.39 -0.02 2.39 16 34 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 38 H 0.12 6.27 6.11 -2.91 -0.02 6.26 16 39 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 Total: -1.00 -61.70 329.37 4.89 -56.80 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 1.04 Total: 25.32 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 6.00 Total: -2.49 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -3.97 Total: -88.10 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.21 Total: -32.25 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -61.70 4.89 -56.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167114011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.095 kcal (2) G-P(sol) polarization free energy of solvation -61.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds