Wall clock time and date at job start Tue Mar 31 2020 00:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99976 * 2 1 4 4 O 1.20824 * 120.00649 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99691 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47167 * 59.99879 * 5 3 2 7 7 C 1.52996 * 109.46870 * 299.99722 * 5 3 2 8 8 N 1.46508 * 109.46711 * 179.97438 * 5 3 2 9 9 C 1.46499 * 119.99799 * 60.00315 * 8 5 3 10 10 C 1.38364 * 119.99596 * 239.99521 * 8 5 3 11 11 C 1.39713 * 119.42945 * 185.02172 * 10 8 5 12 12 C 1.36557 * 119.49554 * 179.69221 * 11 10 8 13 13 C 1.41328 * 118.40564 * 0.53031 * 12 11 10 14 14 C 1.41202 * 120.57170 * 179.76949 * 13 12 11 15 15 H 1.07994 * 120.00195 * 154.61349 * 14 13 12 16 16 C 1.39870 * 119.99818 * 334.61249 * 14 13 12 17 17 N 1.30903 * 119.99908 * 344.19538 * 16 14 13 18 18 Si 1.86797 * 120.00030 * 164.19498 * 16 14 13 19 19 H 1.48504 * 109.47345 * 59.99993 * 18 16 14 20 20 H 1.48506 * 109.47373 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47071 * 299.99957 * 18 16 14 22 22 C 1.40756 * 118.85689 * 359.49784 * 13 12 11 23 23 C 1.50706 * 119.81121 * 180.25417 * 22 13 12 24 24 N 1.31480 * 120.37047 * 0.22915 * 22 13 12 25 25 H 1.09001 * 109.47112 * 59.99768 * 1 2 3 26 26 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46858 * 299.99961 * 1 2 3 28 28 H 1.08996 * 109.47504 * 60.00059 * 7 5 3 29 29 H 1.09001 * 109.47258 * 180.02562 * 7 5 3 30 30 H 1.08999 * 109.47354 * 300.00043 * 7 5 3 31 31 H 1.09009 * 109.46697 * 269.99477 * 9 8 5 32 32 H 1.09000 * 109.47354 * 29.99515 * 9 8 5 33 33 H 1.09002 * 109.47043 * 150.00198 * 9 8 5 34 34 H 1.08001 * 120.25013 * 0.02562 * 11 10 8 35 35 H 1.07997 * 120.79975 * 180.29851 * 12 11 10 36 36 H 0.97006 * 120.00048 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.47354 * 90.00057 * 23 22 13 38 38 H 1.09005 * 109.46472 * 209.99867 * 23 22 13 39 39 H 1.08998 * 109.47340 * 329.99166 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8908 7 6 4.1138 0.5810 1.2483 8 7 3.9818 2.6797 -0.0011 9 6 3.5815 3.5622 1.0977 10 6 4.7521 3.1729 -1.0392 11 6 5.2300 4.4843 -0.9765 12 6 5.9958 4.9704 -1.9974 13 6 6.2690 4.1232 -3.0951 14 6 7.0517 4.5804 -4.1777 15 1 7.5953 3.8740 -4.7874 16 6 7.1230 5.9484 -4.4605 17 7 6.2463 6.7705 -3.9419 18 14 8.4693 6.6021 -5.5783 19 1 8.3559 5.9649 -6.9149 20 1 8.3263 8.0737 -5.7172 21 1 9.7965 6.2875 -4.9910 22 6 5.7523 2.8139 -3.0879 23 6 6.0353 1.8904 -4.2448 24 7 5.0247 2.3920 -2.0774 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8047 -0.4642 1.2483 29 1 5.2023 0.6383 1.2482 30 1 3.7245 1.0749 2.1385 31 1 2.6286 4.0334 0.8565 32 1 3.4773 2.9790 2.0126 33 1 4.3408 4.3310 1.2412 34 1 5.0001 5.1070 -0.1246 35 1 6.3802 5.9792 -1.9684 36 1 6.2955 7.7192 -4.1383 37 1 6.9529 1.3352 -4.0504 38 1 5.2065 1.1925 -4.3635 39 1 6.1509 2.4757 -5.1570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167114045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:41 Heat of formation + Delta-G solvation = -43.086803 kcal Electronic energy + Delta-G solvation = -21878.075534 eV Core-core repulsion = 18593.162898 eV Total energy + Delta-G solvation = -3284.912637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35789 -38.78528 -36.76227 -35.67450 -33.76118 -32.13923 -30.63536 -30.08978 -27.65885 -27.04687 -26.09984 -24.75664 -23.27000 -21.42573 -20.09655 -19.69972 -17.43490 -17.20524 -16.62780 -16.50518 -15.88478 -15.27406 -14.78071 -14.13197 -13.77621 -13.63605 -13.55738 -13.12179 -12.87083 -12.74575 -12.31887 -12.16333 -11.84760 -11.83990 -11.61624 -11.46077 -11.43185 -11.19274 -11.11886 -11.05053 -10.82986 -10.66451 -10.56271 -10.08221 -9.70896 -9.33683 -8.51387 -8.15878 -8.02362 -6.81286 -6.58221 -4.20067 2.47803 2.67229 2.84374 2.97460 3.07916 3.10698 3.28885 3.80079 3.95222 4.67308 4.92927 5.11428 5.18381 5.26172 5.36667 5.44847 5.52147 5.64756 5.81366 5.85316 5.99314 6.05389 6.22625 6.27003 6.37534 6.50091 6.58258 6.60397 6.68307 6.78297 7.03087 7.15799 7.38325 7.41752 7.59160 7.89100 7.98247 8.15615 8.32954 8.57282 8.83178 8.87377 9.66725 10.22763 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030117 B = 0.004300 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.478601 B = 6510.733626 C = 6782.654159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.445 3.555 4 O -0.500 6.500 5 C 0.173 3.827 6 H 0.138 0.862 7 C -0.153 4.153 8 N -0.603 5.603 9 C 0.108 3.892 10 C 0.280 3.720 11 C -0.198 4.198 12 C -0.092 4.092 13 C 0.038 3.962 14 C -0.452 4.452 15 H 0.080 0.920 16 C 0.073 3.927 17 N -0.804 5.804 18 Si 0.908 3.092 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.265 1.265 22 C 0.035 3.965 23 C -0.070 4.070 24 N -0.519 5.519 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.280 0.720 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 -8.391 7.457 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.285 3.715 4 O -0.386 6.386 5 C 0.065 3.935 6 H 0.155 0.845 7 C -0.212 4.212 8 N -0.323 5.323 9 C -0.036 4.036 10 C 0.050 3.950 11 C -0.221 4.221 12 C -0.119 4.119 13 C 0.033 3.967 14 C -0.483 4.483 15 H 0.099 0.901 16 C -0.143 4.143 17 N -0.431 5.431 18 Si 0.733 3.267 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.104 4.104 23 C -0.127 4.127 24 N -0.235 5.235 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.129 -8.672 7.494 12.557 hybrid contribution 0.394 1.501 -0.466 1.620 sum -4.735 -7.171 7.027 11.101 Atomic orbital electron populations 1.23171 0.77368 1.03119 1.02236 1.86543 1.22719 1.34277 1.84457 1.25218 0.93215 0.81140 0.71895 1.90621 1.67027 1.36331 1.44624 1.20231 0.84793 0.85981 1.02520 0.84508 1.22102 1.02505 1.00252 0.96334 1.45186 1.57086 1.07072 1.22986 1.21459 0.99943 0.93941 0.88207 1.17557 0.97865 0.90208 0.89386 1.20816 1.05452 0.94737 1.01101 1.21293 0.98392 1.00570 0.91616 1.18166 0.93479 0.91541 0.93477 1.19334 1.25259 0.91951 1.11792 0.90150 1.25877 0.95395 0.97081 0.95948 1.69810 1.30107 1.05072 1.38065 0.86367 0.81770 0.77858 0.80707 1.19037 1.20490 1.18941 1.20710 1.00245 0.94985 0.94442 1.20247 0.99491 0.97133 0.95873 1.66179 1.18159 1.37543 1.01589 0.92173 0.88492 0.92347 0.90924 0.90702 0.92527 0.93436 0.92977 0.91566 0.88064 0.85385 0.90927 0.93355 0.93461 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.20 10.47 -39.25 -0.41 -5.61 16 3 C 0.44 7.54 7.15 36.01 0.26 7.80 16 4 O -0.50 -9.81 14.48 -18.75 -0.27 -10.08 16 5 C 0.17 2.91 3.18 -69.08 -0.22 2.69 16 6 H 0.14 2.50 6.79 -51.93 -0.35 2.14 16 7 C -0.15 -1.97 9.10 37.16 0.34 -1.63 16 8 N -0.60 -11.65 2.63 -175.32 -0.46 -12.11 16 9 C 0.11 1.79 9.07 59.85 0.54 2.33 16 10 C 0.28 6.47 7.37 -155.13 -1.14 5.32 16 11 C -0.20 -4.65 9.19 -39.64 -0.36 -5.02 16 12 C -0.09 -2.37 8.73 -39.01 -0.34 -2.71 16 13 C 0.04 1.01 5.58 -106.65 -0.59 0.41 16 14 C -0.45 -11.63 8.14 -37.85 -0.31 -11.94 16 15 H 0.08 1.96 6.85 -52.49 -0.36 1.60 16 16 C 0.07 1.81 5.20 -17.34 -0.09 1.72 16 17 N -0.80 -20.61 10.93 55.54 0.61 -20.00 16 18 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 C 0.03 0.86 6.86 -81.79 -0.56 0.30 16 23 C -0.07 -1.46 9.58 36.01 0.34 -1.11 16 24 N -0.52 -12.50 8.71 -8.05 -0.07 -12.57 16 25 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.67 6.67 -51.93 -0.35 0.33 16 31 H 0.05 0.85 7.21 -51.92 -0.37 0.47 16 32 H 0.05 0.72 6.43 -51.93 -0.33 0.39 16 33 H 0.07 1.05 5.93 -51.93 -0.31 0.74 16 34 H 0.10 2.12 5.97 -52.49 -0.31 1.81 16 35 H 0.13 3.35 6.25 -52.49 -0.33 3.03 16 36 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.42 6.76 -51.93 -0.35 1.07 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -29.99 321.95 -7.02 -37.01 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.16 Total: 5.49 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.07 Total: -0.38 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.08 Total: -44.69 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.68 Total: -15.69 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.99 -7.02 -37.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167114045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.081 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds