Wall clock time and date at job start Tue Mar 31 2020 00:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99976 * 2 1 4 4 O 1.20824 * 120.00649 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99691 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47167 * 59.99879 * 5 3 2 7 7 C 1.52996 * 109.46870 * 299.99722 * 5 3 2 8 8 N 1.46508 * 109.46711 * 179.97438 * 5 3 2 9 9 C 1.46499 * 119.99799 * 60.00315 * 8 5 3 10 10 C 1.38364 * 119.99596 * 239.99521 * 8 5 3 11 11 C 1.39713 * 119.42945 * 185.02172 * 10 8 5 12 12 C 1.36557 * 119.49554 * 179.69221 * 11 10 8 13 13 C 1.41328 * 118.40564 * 0.53031 * 12 11 10 14 14 C 1.41202 * 120.57170 * 179.76949 * 13 12 11 15 15 H 1.07994 * 120.00195 * 154.61349 * 14 13 12 16 16 C 1.39870 * 119.99818 * 334.61249 * 14 13 12 17 17 N 1.30903 * 119.99908 * 344.19538 * 16 14 13 18 18 Si 1.86797 * 120.00030 * 164.19498 * 16 14 13 19 19 H 1.48504 * 109.47345 * 59.99993 * 18 16 14 20 20 H 1.48506 * 109.47373 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47071 * 299.99957 * 18 16 14 22 22 C 1.40756 * 118.85689 * 359.49784 * 13 12 11 23 23 C 1.50706 * 119.81121 * 180.25417 * 22 13 12 24 24 N 1.31480 * 120.37047 * 0.22915 * 22 13 12 25 25 H 1.09001 * 109.47112 * 59.99768 * 1 2 3 26 26 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46858 * 299.99961 * 1 2 3 28 28 H 1.08996 * 109.47504 * 60.00059 * 7 5 3 29 29 H 1.09001 * 109.47258 * 180.02562 * 7 5 3 30 30 H 1.08999 * 109.47354 * 300.00043 * 7 5 3 31 31 H 1.09009 * 109.46697 * 269.99477 * 9 8 5 32 32 H 1.09000 * 109.47354 * 29.99515 * 9 8 5 33 33 H 1.09002 * 109.47043 * 150.00198 * 9 8 5 34 34 H 1.08001 * 120.25013 * 0.02562 * 11 10 8 35 35 H 1.07997 * 120.79975 * 180.29851 * 12 11 10 36 36 H 0.97006 * 120.00048 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.47354 * 90.00057 * 23 22 13 38 38 H 1.09005 * 109.46472 * 209.99867 * 23 22 13 39 39 H 1.08998 * 109.47340 * 329.99166 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8908 7 6 4.1138 0.5810 1.2483 8 7 3.9818 2.6797 -0.0011 9 6 3.5815 3.5622 1.0977 10 6 4.7521 3.1729 -1.0392 11 6 5.2300 4.4843 -0.9765 12 6 5.9958 4.9704 -1.9974 13 6 6.2690 4.1232 -3.0951 14 6 7.0517 4.5804 -4.1777 15 1 7.5953 3.8740 -4.7874 16 6 7.1230 5.9484 -4.4605 17 7 6.2463 6.7705 -3.9419 18 14 8.4693 6.6021 -5.5783 19 1 8.3559 5.9649 -6.9149 20 1 8.3263 8.0737 -5.7172 21 1 9.7965 6.2875 -4.9910 22 6 5.7523 2.8139 -3.0879 23 6 6.0353 1.8904 -4.2448 24 7 5.0247 2.3920 -2.0774 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8047 -0.4642 1.2483 29 1 5.2023 0.6383 1.2482 30 1 3.7245 1.0749 2.1385 31 1 2.6286 4.0334 0.8565 32 1 3.4773 2.9790 2.0126 33 1 4.3408 4.3310 1.2412 34 1 5.0001 5.1070 -0.1246 35 1 6.3802 5.9792 -1.9684 36 1 6.2955 7.7192 -4.1383 37 1 6.9529 1.3352 -4.0504 38 1 5.2065 1.1925 -4.3635 39 1 6.1509 2.4757 -5.1570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167114045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:40 Heat of formation + Delta-G solvation = -59.201934 kcal Electronic energy + Delta-G solvation = -21878.774339 eV Core-core repulsion = 18593.162898 eV Total energy + Delta-G solvation = -3285.611441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67914 -40.52629 -38.16593 -37.10290 -35.56206 -33.73700 -32.41846 -31.65202 -28.81514 -28.60828 -27.61994 -26.30089 -24.74556 -23.11334 -21.84772 -21.14603 -19.07260 -18.77831 -18.11357 -17.79761 -17.19107 -16.96694 -16.45775 -15.57846 -15.39794 -15.12713 -14.88399 -14.57007 -14.39655 -14.22181 -13.66755 -13.57145 -13.37603 -13.23098 -13.08376 -12.96999 -12.88830 -12.74902 -12.63668 -12.61402 -12.36848 -12.18190 -11.79225 -11.54786 -11.44831 -11.12875 -10.26598 -9.98404 -9.88740 -8.63149 -8.35101 -6.10189 0.87222 1.10655 1.16220 1.42747 1.52247 1.54908 1.67847 2.25461 2.36593 2.83212 3.71916 3.76014 3.95147 4.09662 4.18725 4.30594 4.31187 4.41520 4.54705 4.63670 4.67232 4.68972 4.76798 4.83168 4.87235 4.98007 5.03651 5.07568 5.21663 5.22415 5.35556 5.35930 5.54436 5.63291 5.85781 6.01129 6.35147 6.50427 6.72724 6.78314 6.94707 7.01469 7.80296 8.41740 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030117 B = 0.004300 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.478601 B = 6510.733626 C = 6782.654159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.450 3.550 4 O -0.533 6.533 5 C 0.166 3.834 6 H 0.122 0.878 7 C -0.142 4.142 8 N -0.606 5.606 9 C 0.107 3.893 10 C 0.283 3.717 11 C -0.209 4.209 12 C -0.110 4.110 13 C 0.004 3.996 14 C -0.480 4.480 15 H 0.085 0.915 16 C 0.032 3.968 17 N -0.840 5.840 18 Si 0.981 3.019 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.261 1.261 22 C 0.021 3.979 23 C -0.063 4.063 24 N -0.528 5.528 25 H 0.050 0.950 26 H 0.136 0.864 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.285 0.715 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 -9.866 8.143 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.292 3.708 4 O -0.422 6.422 5 C 0.058 3.942 6 H 0.139 0.861 7 C -0.200 4.200 8 N -0.326 5.326 9 C -0.036 4.036 10 C 0.051 3.949 11 C -0.232 4.232 12 C -0.137 4.137 13 C -0.001 4.001 14 C -0.511 4.511 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.467 5.467 18 Si 0.802 3.198 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.185 1.185 22 C -0.117 4.117 23 C -0.120 4.120 24 N -0.244 5.244 25 H 0.069 0.931 26 H 0.155 0.845 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.248 -10.198 8.211 14.105 hybrid contribution 0.251 1.830 -0.567 1.932 sum -4.997 -8.368 7.644 12.386 Atomic orbital electron populations 1.23520 0.75202 1.05700 1.02077 1.86516 1.24715 1.32550 1.83720 1.25102 0.93208 0.81389 0.71126 1.90617 1.67709 1.37492 1.46343 1.20450 0.85069 0.84673 1.03966 0.86082 1.22042 1.02231 1.01229 0.94489 1.45409 1.56290 1.08544 1.22330 1.21575 0.99163 0.94304 0.88517 1.17907 0.97196 0.90043 0.89754 1.21025 1.05275 0.95537 1.01374 1.21301 0.99545 1.00238 0.92602 1.18517 0.94805 0.92598 0.94204 1.19578 1.26194 0.92972 1.12328 0.89654 1.26712 0.97190 0.96884 0.97293 1.69885 1.31687 1.05512 1.39623 0.85267 0.78539 0.77269 0.78730 1.18295 1.19905 1.18501 1.21294 0.99678 0.95236 0.95503 1.20234 1.00768 0.96722 0.94311 1.66336 1.18517 1.37686 1.01899 0.93138 0.84550 0.91787 0.88553 0.90819 0.91201 0.94908 0.89754 0.91086 0.86029 0.86767 0.90493 0.91573 0.92230 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -9.45 10.47 -51.38 -0.54 -9.98 16 3 C 0.45 14.57 7.15 71.24 0.51 15.08 16 4 O -0.53 -20.48 14.48 21.97 0.32 -20.17 16 5 C 0.17 5.33 3.18 44.25 0.14 5.47 16 6 H 0.12 4.31 6.79 -2.39 -0.02 4.30 16 7 C -0.14 -3.23 9.10 71.98 0.66 -2.58 16 8 N -0.61 -22.86 2.63 -708.60 -1.87 -24.73 16 9 C 0.11 3.40 9.07 127.77 1.16 4.56 16 10 C 0.28 13.08 7.37 133.32 0.98 14.06 16 11 C -0.21 -9.98 9.19 22.23 0.20 -9.78 16 12 C -0.11 -5.86 8.73 22.64 0.20 -5.66 16 13 C 0.00 0.20 5.58 -21.18 -0.12 0.08 16 14 C -0.48 -25.19 8.14 23.39 0.19 -25.00 16 15 H 0.09 4.22 6.85 -2.91 -0.02 4.20 16 16 C 0.03 1.61 5.20 85.23 0.44 2.05 16 17 N -0.84 -44.20 10.93 21.82 0.24 -43.96 16 18 Si 0.98 37.99 29.59 68.60 2.03 40.02 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 22 C 0.02 1.07 6.86 43.23 0.30 1.37 16 23 C -0.06 -2.60 9.58 71.24 0.68 -1.92 16 24 N -0.53 -25.52 8.71 -179.37 -1.56 -27.08 16 25 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 26 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.19 8.13 -2.39 -0.02 1.18 16 28 H 0.10 1.76 8.11 -2.39 -0.02 1.74 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.42 6.67 -2.39 -0.02 1.40 16 31 H 0.03 1.14 7.21 -2.38 -0.02 1.13 16 32 H 0.08 2.11 6.43 -2.39 -0.02 2.10 16 33 H 0.07 2.16 5.93 -2.39 -0.01 2.15 16 34 H 0.12 5.14 5.97 -2.91 -0.02 5.12 16 35 H 0.11 6.27 6.25 -2.91 -0.02 6.25 16 36 H 0.28 13.72 8.30 -92.70 -0.77 12.95 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.06 2.72 6.76 -2.39 -0.02 2.71 16 Total: -1.00 -66.02 321.95 6.22 -59.79 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 1.07 Total: 26.63 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 6.54 Total: -0.52 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -3.19 Total: -95.77 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.22 Total: -30.15 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -66.02 6.22 -59.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167114045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.591 kcal (2) G-P(sol) polarization free energy of solvation -66.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds