Wall clock time and date at job start Tue Mar 31 2020 00:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 112.84684 * 2 1 4 4 C 1.53777 * 113.61546 * 228.69555 * 2 1 3 5 5 C 1.53783 * 87.08336 * 270.88026 * 4 2 1 6 6 H 1.08999 * 113.68525 * 89.12634 * 5 4 2 7 7 C 1.52999 * 113.61697 * 220.01897 * 5 4 2 8 8 N 1.46492 * 109.47005 * 272.49619 * 7 5 4 9 9 C 1.39129 * 119.99958 * 179.97438 * 8 7 5 10 10 C 1.39169 * 119.62734 * 0.02562 * 9 8 7 11 11 C 1.38219 * 119.16861 * 179.97438 * 10 9 8 12 12 C 1.39454 * 118.44537 * 359.72878 * 11 10 9 13 13 O 1.35818 * 120.39849 * 180.28777 * 12 11 10 14 14 C 1.34805 * 117.00435 * 354.79201 * 13 12 11 15 15 H 1.08000 * 119.99732 * 5.07518 * 14 13 12 16 16 C 1.38624 * 120.00010 * 185.07506 * 14 13 12 17 17 N 1.31575 * 120.00139 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46715 * 60.00176 * 18 16 14 20 20 H 1.48500 * 109.47255 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47340 * 300.00358 * 18 16 14 22 22 C 1.38670 * 119.19440 * 0.53217 * 12 11 10 23 23 N 1.31933 * 120.75612 * 359.45767 * 22 12 11 24 24 C 1.53775 * 113.61602 * 131.19440 * 2 1 3 25 25 H 1.08998 * 109.47069 * 288.79994 * 1 2 3 26 26 H 1.09001 * 109.47125 * 48.80600 * 1 2 3 27 27 H 1.09005 * 109.46720 * 168.80176 * 1 2 3 28 28 H 0.96697 * 113.99981 * 311.19446 * 3 2 1 29 29 H 1.09005 * 113.61513 * 156.33380 * 4 2 1 30 30 H 1.08995 * 113.61569 * 25.43252 * 4 2 1 31 31 H 1.08998 * 109.47006 * 152.49499 * 7 5 4 32 32 H 1.09001 * 109.46688 * 32.50120 * 7 5 4 33 33 H 0.96998 * 120.00606 * 0.02562 * 8 7 5 34 34 H 1.07993 * 120.42097 * 0.02562 * 10 9 8 35 35 H 1.07995 * 120.77061 * 180.02562 * 11 10 9 36 36 H 0.97002 * 120.00032 * 179.97438 * 17 16 14 37 37 H 1.08000 * 119.61881 * 179.73093 * 22 12 11 38 38 H 1.08997 * 113.61826 * 334.57466 * 24 2 1 39 39 H 1.08997 * 113.69666 * 203.67654 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0848 1.3170 0.0000 4 6 2.1460 -0.9300 -1.0584 5 6 2.0930 -2.0425 0.0019 6 1 1.1575 -2.6019 0.0034 7 6 3.3265 -2.9477 0.0028 8 7 3.1299 -4.0419 -0.9512 9 6 4.1242 -4.9991 -1.1265 10 6 5.3024 -4.9099 -0.3911 11 6 6.2837 -5.8663 -0.5724 12 6 6.0500 -6.8927 -1.4871 13 8 6.9847 -7.8565 -1.6921 14 6 8.1660 -7.7080 -1.0599 15 1 8.3062 -6.8964 -0.3613 16 6 9.2006 -8.5970 -1.3064 17 7 9.0296 -9.5861 -2.1570 18 14 10.8378 -8.3908 -0.4307 19 1 10.6290 -8.4812 1.0368 20 1 11.7697 -9.4625 -0.8646 21 1 11.4159 -7.0651 -0.7677 22 6 4.8540 -6.9143 -2.1885 23 7 3.9388 -5.9848 -1.9906 24 6 2.1460 -0.9280 1.0602 25 1 -0.3633 0.3312 0.9728 26 1 -0.3633 0.6768 -0.7733 27 1 -0.3633 -1.0082 -0.1996 28 1 1.7014 1.9053 -0.6647 29 1 3.1591 -0.6510 -1.3483 30 1 1.4946 -1.1104 -1.9135 31 1 3.4750 -3.3586 1.0014 32 1 4.2031 -2.3675 -0.2853 33 1 2.3068 -4.0987 -1.4613 34 1 5.4478 -4.1041 0.3130 35 1 7.2077 -5.8224 -0.0151 36 1 9.7537 -10.2079 -2.3298 37 1 4.6677 -7.7036 -2.9018 38 1 1.4945 -1.1068 1.9156 39 1 3.1590 -0.6496 1.3507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168346611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:44 Heat of formation + Delta-G solvation = -17.939299 kcal Electronic energy + Delta-G solvation = -20632.529155 eV Core-core repulsion = 17348.706996 eV Total energy + Delta-G solvation = -3283.822159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28807 -39.47444 -37.30434 -35.87649 -34.21745 -32.23806 -31.20334 -30.03255 -28.23375 -26.19832 -26.01245 -25.02360 -23.08458 -21.86903 -21.10387 -19.24286 -18.10228 -17.43475 -17.01583 -16.20929 -15.94501 -15.56556 -15.09764 -14.78508 -14.44334 -14.10922 -14.00976 -13.53125 -13.45859 -13.14401 -13.01276 -12.51074 -12.31416 -12.29773 -12.13445 -11.69271 -11.64811 -11.58023 -11.32763 -11.07659 -10.96857 -10.56598 -10.51645 -10.01762 -9.63281 -9.29293 -8.94487 -8.73188 -8.52830 -6.63948 -6.40411 -3.97750 2.05495 2.43939 3.14758 3.16107 3.18634 3.52546 3.88720 4.00018 4.19048 4.23603 4.42774 4.46883 4.69818 4.92191 5.06607 5.12129 5.15561 5.27725 5.32130 5.44695 5.47247 5.49597 5.57005 5.61334 5.70295 5.73865 5.78746 5.95037 5.98008 6.01842 6.15366 6.54549 6.75090 7.12954 7.20397 7.29110 7.34334 7.69725 8.00766 8.15752 8.92670 9.04816 9.74506 10.77515 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036244 B = 0.002860 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.357568 B = 9788.475943 C =10340.120963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 O -0.554 6.554 4 C -0.155 4.155 5 C -0.118 4.118 6 H 0.098 0.902 7 C 0.151 3.849 8 N -0.739 5.739 9 C 0.309 3.691 10 C -0.184 4.184 11 C -0.155 4.155 12 C 0.064 3.936 13 O -0.178 6.178 14 C -0.391 4.391 15 H 0.087 0.913 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.271 1.271 22 C 0.068 3.932 23 N -0.502 5.502 24 C -0.113 4.113 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.374 0.626 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.395 0.605 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.270 0.730 37 H 0.151 0.849 38 H 0.075 0.925 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.916 17.689 4.801 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 O -0.360 6.360 4 C -0.193 4.193 5 C -0.137 4.137 6 H 0.116 0.884 7 C 0.025 3.975 8 N -0.379 5.379 9 C 0.077 3.923 10 C -0.209 4.209 11 C -0.183 4.183 12 C 0.009 3.991 13 O -0.081 6.081 14 C -0.468 4.468 15 H 0.105 0.895 16 C -0.165 4.165 17 N -0.500 5.500 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.091 4.091 23 N -0.219 5.219 24 C -0.151 4.151 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.222 0.778 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.229 0.771 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.080 0.920 37 H 0.169 0.831 38 H 0.094 0.906 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.073 17.080 4.735 22.631 hybrid contribution 1.014 0.400 0.327 1.138 sum -13.058 17.479 5.063 22.398 Atomic orbital electron populations 1.22160 0.93877 1.03131 1.02689 1.22667 0.92335 0.81918 0.97386 1.86572 1.65517 1.22829 1.61035 1.23771 1.02456 0.95869 0.97201 1.22541 0.99292 0.94520 0.97304 0.88394 1.21093 0.96336 0.87301 0.92736 1.43886 1.19124 1.27325 1.47533 1.17922 0.88817 0.90467 0.95096 1.21094 0.94344 1.01765 1.03654 1.21408 1.00323 0.95699 1.00837 1.20245 0.92413 0.90548 0.95925 1.83992 1.21782 1.38955 1.63409 1.21182 0.87412 1.14787 1.23373 0.89526 1.25234 0.98947 0.95342 0.96972 1.70031 1.33159 1.14291 1.32492 0.85814 0.80228 0.78335 0.79225 1.19594 1.20301 1.19587 1.21450 0.88834 0.97972 1.00857 1.66922 1.32326 1.03544 1.19096 1.23071 1.02460 0.93200 0.96345 0.91547 0.91963 0.90968 0.77816 0.88996 0.91166 0.92585 0.92562 0.77091 0.86633 0.84667 0.92040 0.83139 0.90599 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.32 37.16 0.35 -0.61 16 2 C 0.10 0.76 1.94 -89.81 -0.17 0.58 16 3 O -0.55 -4.77 13.50 -35.23 -0.48 -5.24 16 4 C -0.16 -1.30 7.03 -25.92 -0.18 -1.49 16 5 C -0.12 -1.01 3.40 -89.80 -0.31 -1.32 16 6 H 0.10 0.78 7.66 -51.93 -0.40 0.38 16 7 C 0.15 1.70 4.73 -4.05 -0.02 1.68 16 8 N -0.74 -10.61 5.73 -60.39 -0.35 -10.95 16 9 C 0.31 5.79 7.65 -154.90 -1.19 4.60 16 10 C -0.18 -3.48 9.32 -39.24 -0.37 -3.85 16 11 C -0.16 -3.39 9.26 -39.14 -0.36 -3.75 16 12 C 0.06 1.56 6.67 -38.97 -0.26 1.30 16 13 O -0.18 -5.07 9.77 -0.09 0.00 -5.07 16 14 C -0.39 -10.90 9.50 30.87 0.29 -10.61 16 15 H 0.09 2.22 5.25 -52.49 -0.28 1.95 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 18 Si 0.94 20.54 29.55 -169.99 -5.02 15.51 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 C 0.07 1.51 11.14 -17.35 -0.19 1.32 16 23 N -0.50 -10.38 10.39 -12.25 -0.13 -10.51 16 24 C -0.11 -0.92 7.06 -25.92 -0.18 -1.11 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.40 7.34 -51.93 -0.38 0.02 16 28 H 0.37 1.77 9.04 45.56 0.41 2.18 16 29 H 0.09 0.89 7.90 -51.93 -0.41 0.48 16 30 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.06 0.64 7.92 -51.93 -0.41 0.23 16 32 H 0.06 0.66 7.63 -51.93 -0.40 0.27 16 33 H 0.39 5.24 8.60 -40.82 -0.35 4.89 16 34 H 0.12 1.84 6.70 -52.49 -0.35 1.49 16 35 H 0.14 2.88 5.75 -52.49 -0.30 2.57 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.15 3.14 8.06 -52.49 -0.42 2.72 16 38 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 39 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -32.31 327.16 -7.50 -39.81 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.53 Total: 8.42 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -2.69 Total: -12.26 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.29 Total: -46.10 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.48 Total: -10.31 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.31 -7.50 -39.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168346611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.872 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds