Wall clock time and date at job start Tue Mar 31 2020 00:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 112.84684 * 2 1 4 4 C 1.53777 * 113.61546 * 228.69555 * 2 1 3 5 5 C 1.53783 * 87.08336 * 270.88026 * 4 2 1 6 6 H 1.08999 * 113.68525 * 89.12634 * 5 4 2 7 7 C 1.52999 * 113.61697 * 220.01897 * 5 4 2 8 8 N 1.46492 * 109.47005 * 272.49619 * 7 5 4 9 9 C 1.39129 * 119.99958 * 179.97438 * 8 7 5 10 10 C 1.39169 * 119.62734 * 0.02562 * 9 8 7 11 11 C 1.38219 * 119.16861 * 179.97438 * 10 9 8 12 12 C 1.39454 * 118.44537 * 359.72878 * 11 10 9 13 13 O 1.35818 * 120.39849 * 180.28777 * 12 11 10 14 14 C 1.34805 * 117.00435 * 354.79201 * 13 12 11 15 15 H 1.08000 * 119.99732 * 5.07518 * 14 13 12 16 16 C 1.38624 * 120.00010 * 185.07506 * 14 13 12 17 17 N 1.31575 * 120.00139 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46715 * 60.00176 * 18 16 14 20 20 H 1.48500 * 109.47255 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47340 * 300.00358 * 18 16 14 22 22 C 1.38670 * 119.19440 * 0.53217 * 12 11 10 23 23 N 1.31933 * 120.75612 * 359.45767 * 22 12 11 24 24 C 1.53775 * 113.61602 * 131.19440 * 2 1 3 25 25 H 1.08998 * 109.47069 * 288.79994 * 1 2 3 26 26 H 1.09001 * 109.47125 * 48.80600 * 1 2 3 27 27 H 1.09005 * 109.46720 * 168.80176 * 1 2 3 28 28 H 0.96697 * 113.99981 * 311.19446 * 3 2 1 29 29 H 1.09005 * 113.61513 * 156.33380 * 4 2 1 30 30 H 1.08995 * 113.61569 * 25.43252 * 4 2 1 31 31 H 1.08998 * 109.47006 * 152.49499 * 7 5 4 32 32 H 1.09001 * 109.46688 * 32.50120 * 7 5 4 33 33 H 0.96998 * 120.00606 * 0.02562 * 8 7 5 34 34 H 1.07993 * 120.42097 * 0.02562 * 10 9 8 35 35 H 1.07995 * 120.77061 * 180.02562 * 11 10 9 36 36 H 0.97002 * 120.00032 * 179.97438 * 17 16 14 37 37 H 1.08000 * 119.61881 * 179.73093 * 22 12 11 38 38 H 1.08997 * 113.61826 * 334.57466 * 24 2 1 39 39 H 1.08997 * 113.69666 * 203.67654 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0848 1.3170 0.0000 4 6 2.1460 -0.9300 -1.0584 5 6 2.0930 -2.0425 0.0019 6 1 1.1575 -2.6019 0.0034 7 6 3.3265 -2.9477 0.0028 8 7 3.1299 -4.0419 -0.9512 9 6 4.1242 -4.9991 -1.1265 10 6 5.3024 -4.9099 -0.3911 11 6 6.2837 -5.8663 -0.5724 12 6 6.0500 -6.8927 -1.4871 13 8 6.9847 -7.8565 -1.6921 14 6 8.1660 -7.7080 -1.0599 15 1 8.3062 -6.8964 -0.3613 16 6 9.2006 -8.5970 -1.3064 17 7 9.0296 -9.5861 -2.1570 18 14 10.8378 -8.3908 -0.4307 19 1 10.6290 -8.4812 1.0368 20 1 11.7697 -9.4625 -0.8646 21 1 11.4159 -7.0651 -0.7677 22 6 4.8540 -6.9143 -2.1885 23 7 3.9388 -5.9848 -1.9906 24 6 2.1460 -0.9280 1.0602 25 1 -0.3633 0.3312 0.9728 26 1 -0.3633 0.6768 -0.7733 27 1 -0.3633 -1.0082 -0.1996 28 1 1.7014 1.9053 -0.6647 29 1 3.1591 -0.6510 -1.3483 30 1 1.4946 -1.1104 -1.9135 31 1 3.4750 -3.3586 1.0014 32 1 4.2031 -2.3675 -0.2853 33 1 2.3068 -4.0987 -1.4613 34 1 5.4478 -4.1041 0.3130 35 1 7.2077 -5.8224 -0.0151 36 1 9.7537 -10.2079 -2.3298 37 1 4.6677 -7.7036 -2.9018 38 1 1.4945 -1.1068 1.9156 39 1 3.1590 -0.6496 1.3507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168346611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:43 Heat of formation + Delta-G solvation = -41.482608 kcal Electronic energy + Delta-G solvation = -20633.550070 eV Core-core repulsion = 17348.706996 eV Total energy + Delta-G solvation = -3284.843073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32523 -40.79871 -39.04730 -36.83891 -35.31040 -34.20440 -32.89539 -30.96642 -29.45522 -27.51187 -26.83546 -26.55084 -24.61842 -23.13848 -22.38718 -20.13368 -19.78197 -19.01339 -17.93791 -17.72321 -17.28470 -16.34895 -16.22687 -16.08926 -15.84703 -15.49831 -15.35370 -15.05883 -14.68114 -14.49853 -14.03557 -13.83671 -13.53027 -13.45932 -13.28682 -13.05923 -12.86526 -12.69105 -12.30949 -12.17474 -12.09749 -11.74939 -11.57616 -11.24781 -10.95694 -10.64038 -10.55999 -10.40242 -10.27703 -8.42162 -8.24812 -6.07157 0.36618 0.73696 1.37775 1.48371 1.53699 2.18921 2.32780 2.90088 3.21039 3.29344 3.52291 3.56226 3.60032 3.78106 3.83826 3.88443 4.09349 4.21938 4.31657 4.36640 4.42328 4.60075 4.75296 4.78543 4.80180 4.88653 4.90833 4.93910 4.97585 5.09395 5.17844 5.28625 5.33097 5.46849 5.50616 5.58399 6.01646 6.27874 6.77167 6.91452 7.01883 7.34104 7.82694 8.80936 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036244 B = 0.002860 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.357568 B = 9788.475943 C =10340.120963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.100 3.900 3 O -0.573 6.573 4 C -0.157 4.157 5 C -0.109 4.109 6 H 0.111 0.889 7 C 0.145 3.855 8 N -0.724 5.724 9 C 0.326 3.674 10 C -0.182 4.182 11 C -0.150 4.150 12 C 0.023 3.977 13 O -0.228 6.228 14 C -0.411 4.411 15 H 0.101 0.899 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.017 2.983 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.258 1.258 22 C 0.066 3.934 23 N -0.514 5.514 24 C -0.116 4.116 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.390 0.610 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.404 0.596 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.272 0.728 37 H 0.153 0.847 38 H 0.087 0.913 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 20.302 6.324 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 O -0.382 6.382 4 C -0.194 4.194 5 C -0.127 4.127 6 H 0.129 0.871 7 C 0.020 3.980 8 N -0.362 5.362 9 C 0.091 3.909 10 C -0.206 4.206 11 C -0.177 4.177 12 C -0.030 4.030 13 O -0.134 6.134 14 C -0.488 4.488 15 H 0.118 0.882 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.836 3.164 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.092 4.092 23 N -0.232 5.232 24 C -0.154 4.154 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.240 0.760 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.170 0.830 35 H 0.155 0.845 36 H 0.081 0.919 37 H 0.170 0.830 38 H 0.105 0.895 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.286 19.763 6.263 25.758 hybrid contribution 1.058 -0.124 -0.120 1.072 sum -14.228 19.639 6.143 25.017 Atomic orbital electron populations 1.22147 0.92305 1.03834 1.03278 1.22694 0.93369 0.81503 0.96527 1.86529 1.66274 1.23441 1.61926 1.23752 1.01914 0.96105 0.97656 1.22483 0.98433 0.94068 0.97745 0.87090 1.21347 0.97910 0.86622 0.92073 1.44102 1.18182 1.26505 1.47378 1.18361 0.89471 0.89955 0.93157 1.21392 0.93451 1.01800 1.03994 1.21579 1.01052 0.95347 0.99748 1.20609 0.92721 0.91607 0.98049 1.83956 1.22791 1.41288 1.65341 1.21724 0.87850 1.15437 1.23788 0.88204 1.26532 1.03022 0.94737 0.97788 1.70186 1.34697 1.15946 1.35183 0.84673 0.74645 0.78747 0.78309 1.18143 1.19854 1.18236 1.21546 0.88564 0.98440 1.00621 1.67032 1.31842 1.04079 1.20210 1.23094 1.02358 0.93097 0.96818 0.91363 0.90825 0.90419 0.76036 0.90465 0.90451 0.91868 0.92580 0.76082 0.83047 0.84452 0.91942 0.82995 0.89465 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.32 71.98 0.67 -0.70 16 2 C 0.10 1.27 1.94 -10.27 -0.02 1.25 16 3 O -0.57 -8.61 13.50 -148.98 -2.01 -10.62 16 4 C -0.16 -2.21 7.03 31.12 0.22 -1.99 16 5 C -0.11 -1.51 3.40 -10.26 -0.03 -1.54 16 6 H 0.11 1.32 7.66 -2.39 -0.02 1.30 16 7 C 0.14 2.78 4.73 86.38 0.41 3.19 16 8 N -0.72 -18.49 5.73 -344.96 -1.98 -20.47 16 9 C 0.33 11.47 7.65 133.03 1.02 12.49 16 10 C -0.18 -6.46 9.32 22.49 0.21 -6.25 16 11 C -0.15 -6.49 9.26 22.56 0.21 -6.28 16 12 C 0.02 1.16 6.67 22.67 0.15 1.31 16 13 O -0.23 -13.60 9.77 -23.24 -0.23 -13.83 16 14 C -0.41 -23.71 9.50 67.91 0.64 -23.07 16 15 H 0.10 5.20 5.25 -2.91 -0.02 5.19 16 16 C -0.02 -1.33 5.49 84.82 0.47 -0.86 16 17 N -0.92 -56.53 13.67 21.61 0.30 -56.23 16 18 Si 1.02 42.56 29.55 68.60 2.03 44.59 16 19 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 C 0.07 2.98 11.14 84.78 0.94 3.92 16 23 N -0.51 -20.76 10.39 -192.66 -2.00 -22.76 16 24 C -0.12 -1.57 7.06 31.12 0.22 -1.35 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.08 0.60 7.34 -2.38 -0.02 0.58 16 28 H 0.39 2.83 9.04 -74.06 -0.67 2.16 16 29 H 0.08 1.34 7.90 -2.38 -0.02 1.32 16 30 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 31 H 0.06 1.20 7.92 -2.39 -0.02 1.18 16 32 H 0.06 1.14 7.63 -2.39 -0.02 1.12 16 33 H 0.40 9.36 8.60 -92.71 -0.80 8.57 16 34 H 0.15 4.26 6.70 -2.91 -0.02 4.24 16 35 H 0.14 5.79 5.75 -2.91 -0.02 5.77 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.15 6.63 8.06 -2.91 -0.02 6.61 16 38 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 Total: -1.00 -72.38 327.16 0.83 -71.55 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.38 Total: 27.66 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 5.10 Total: -19.89 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.68 Total: -99.46 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -2.24 Total: -24.45 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -72.38 0.83 -71.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168346611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.071 kcal (2) G-P(sol) polarization free energy of solvation -72.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds