Wall clock time and date at job start Tue Mar 31 2020 00:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34685 * 117.00119 * 2 1 4 4 O 1.21435 * 120.00008 * 0.02562 * 3 2 1 5 5 C 1.48049 * 119.99990 * 180.02562 * 3 2 1 6 6 C 1.39175 * 119.68283 * 179.97438 * 5 3 2 7 7 C 1.38792 * 119.22127 * 180.02562 * 6 5 3 8 8 C 1.38283 * 118.58451 * 359.73787 * 7 6 5 9 9 C 1.50701 * 120.35158 * 180.26081 * 8 7 6 10 10 C 1.39479 * 119.29802 * 0.52783 * 8 7 6 11 11 N 1.38981 * 119.63447 * 179.72967 * 10 8 7 12 12 C 1.46499 * 119.99777 * 179.45293 * 11 10 8 13 13 C 1.53004 * 109.47198 * 180.27791 * 12 11 10 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47129 * 60.00316 * 19 17 15 21 21 H 1.48498 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47240 * 300.00255 * 19 17 15 23 23 N 1.32055 * 120.72879 * 359.45610 * 10 8 7 24 24 H 1.09004 * 109.46900 * 299.99643 * 1 2 3 25 25 H 1.08995 * 109.47199 * 59.99535 * 1 2 3 26 26 H 1.08993 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.38864 * 0.02562 * 6 5 3 28 28 H 1.07997 * 120.70511 * 180.02562 * 7 6 5 29 29 H 1.08997 * 109.46977 * 270.26566 * 9 8 7 30 30 H 1.08997 * 109.47418 * 30.26857 * 9 8 7 31 31 H 1.09003 * 109.47347 * 150.27395 * 9 8 7 32 32 H 0.97001 * 120.00373 * 359.73505 * 11 10 8 33 33 H 1.09009 * 109.47454 * 300.27561 * 12 11 10 34 34 H 1.08998 * 109.47492 * 60.27855 * 12 11 10 35 35 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 36 36 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 37 37 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 38 38 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 39 39 H 0.97000 * 120.00572 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4022 2.2185 0.0005 5 6 3.5420 1.2775 -0.0006 6 6 4.1670 2.5210 -0.0011 7 6 5.5536 2.5824 -0.0022 8 6 6.2683 1.3987 0.0029 9 6 7.7752 1.4189 0.0078 10 6 5.5798 0.1856 -0.0024 11 7 6.2912 -1.0083 -0.0030 12 6 5.5761 -2.2869 0.0036 13 6 6.5862 -3.4362 0.0084 14 6 5.8394 -4.7715 0.0159 15 6 6.8344 -5.9034 0.0200 16 1 7.8934 -5.6915 0.0178 17 6 6.3927 -7.2095 0.0264 18 7 5.1031 -7.4675 0.0286 19 14 7.6259 -8.6125 0.0321 20 1 8.4793 -8.5165 1.2436 21 1 6.9011 -9.9086 0.0381 22 1 8.4777 -8.5278 -1.1814 23 7 4.2595 0.1591 -0.0012 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.5799 3.4275 -0.0007 28 1 6.0634 3.5345 -0.0022 29 1 8.1418 1.4263 -1.0186 30 1 8.1248 2.3124 0.5249 31 1 8.1488 0.5326 0.5207 32 1 7.2611 -0.9951 -0.0038 33 1 4.9510 -2.3491 0.8945 34 1 4.9497 -2.3576 -0.8855 35 1 7.2113 -3.3740 -0.8824 36 1 7.2127 -3.3656 0.8976 37 1 5.2146 -4.8334 0.9069 38 1 5.2127 -4.8423 -0.8731 39 1 4.7923 -8.3864 0.0327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:44 Heat of formation + Delta-G solvation = -59.865195 kcal Electronic energy + Delta-G solvation = -20702.148524 eV Core-core repulsion = 17416.508322 eV Total energy + Delta-G solvation = -3285.640202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.89291 -39.83989 -36.66386 -36.14736 -34.02923 -33.53765 -31.84636 -29.95633 -28.78642 -27.12558 -26.47536 -23.82762 -23.10670 -21.93531 -21.28095 -20.23592 -18.44475 -17.39910 -16.58895 -16.45819 -16.07729 -15.99307 -15.26785 -15.11665 -14.49518 -14.21641 -14.14303 -13.74555 -13.45908 -13.27042 -12.82882 -12.76027 -12.26596 -12.17568 -11.95756 -11.93031 -11.67983 -10.93037 -10.92856 -10.84324 -10.68925 -10.59497 -10.29579 -9.78142 -9.61275 -9.60291 -9.39267 -9.12438 -8.36252 -7.61994 -6.01018 -4.04125 0.49153 1.35974 2.37995 2.54473 3.30167 3.32162 3.36990 3.39209 3.81594 4.21838 4.44960 4.62026 4.73448 4.84879 5.03675 5.10055 5.11187 5.18722 5.34634 5.38484 5.40926 5.47755 5.72701 5.77009 5.84091 5.84690 6.04926 6.22359 6.23138 6.31720 6.64404 6.72794 6.97009 7.17366 7.39910 7.63816 7.64689 7.78061 7.97943 8.19139 8.39125 9.02318 9.59895 11.10191 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.003595 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.772031 B = 7785.727507 C = 9349.129040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.329 6.329 3 C 0.526 3.474 4 O -0.505 6.505 5 C 0.133 3.867 6 C -0.170 4.170 7 C -0.047 4.047 8 C -0.175 4.175 9 C -0.107 4.107 10 C 0.407 3.593 11 N -0.714 5.714 12 C 0.127 3.873 13 C -0.122 4.122 14 C 0.026 3.974 15 C -0.523 4.523 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.493 5.493 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.407 0.593 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 20.602 -0.088 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.244 6.244 3 C 0.369 3.631 4 O -0.393 6.393 5 C -0.004 4.004 6 C -0.194 4.194 7 C -0.072 4.072 8 C -0.183 4.183 9 C -0.164 4.164 10 C 0.167 3.833 11 N -0.347 5.347 12 C 0.004 3.996 13 C -0.160 4.160 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 N -0.213 5.213 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.124 0.876 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.245 0.755 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.051 19.714 -0.087 19.821 hybrid contribution 1.112 -0.083 0.008 1.115 sum -0.938 19.632 -0.079 19.654 Atomic orbital electron populations 1.23352 0.76205 1.04160 1.02317 1.86751 1.23090 1.31580 1.82967 1.20938 0.88063 0.81697 0.72384 1.90821 1.65992 1.36272 1.46197 1.19574 0.90009 0.89476 1.01363 1.21656 0.95049 0.97628 1.05116 1.21138 0.92928 0.97788 0.95373 1.20498 0.97473 0.92452 1.07830 1.20658 0.90026 1.03107 1.02641 1.18188 0.87546 0.86530 0.91066 1.45016 1.08262 1.02947 1.78458 1.21603 0.95422 0.80612 1.01946 1.21895 0.97777 0.95649 1.00672 1.19005 0.95524 0.89014 0.97657 1.21175 0.92945 0.90997 1.51046 0.92760 1.25017 0.95140 0.98944 0.95277 1.69952 1.13036 1.19778 1.50484 0.86654 0.81271 0.81460 0.78575 1.20259 1.21264 1.20264 1.67169 1.05965 1.30277 1.17868 0.91871 0.91880 0.87647 0.83907 0.84110 0.90778 0.90953 0.91407 0.75503 0.91915 0.91881 0.92885 0.92911 0.96267 0.96264 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.41 16 2 O -0.33 -4.84 10.38 -40.45 -0.42 -5.26 16 3 C 0.53 7.83 7.95 34.75 0.28 8.11 16 4 O -0.50 -7.74 16.10 -19.22 -0.31 -8.05 16 5 C 0.13 1.95 6.74 -83.04 -0.56 1.39 16 6 C -0.17 -2.00 9.63 -39.03 -0.38 -2.37 16 7 C -0.05 -0.46 9.83 -39.36 -0.39 -0.85 16 8 C -0.17 -1.94 5.92 -104.14 -0.62 -2.55 16 9 C -0.11 -0.84 9.58 36.01 0.34 -0.50 16 10 C 0.41 5.84 7.47 -155.20 -1.16 4.69 16 11 N -0.71 -10.26 5.61 -60.41 -0.34 -10.60 16 12 C 0.13 2.23 5.69 -4.04 -0.02 2.20 16 13 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 14 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 N -0.49 -7.96 9.32 -9.01 -0.08 -8.04 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.14 1.46 7.63 -52.48 -0.40 1.06 16 28 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 32 H 0.41 4.89 6.44 -40.82 -0.26 4.62 16 33 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -32.70 337.98 -8.08 -40.78 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.62 Total: -0.44 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.12 Total: -3.88 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.31 Total: -44.68 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.73 Total: -13.31 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.70 -8.08 -40.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.087 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds