Wall clock time and date at job start Tue Mar 31 2020 00:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34685 * 117.00119 * 2 1 4 4 O 1.21435 * 120.00008 * 0.02562 * 3 2 1 5 5 C 1.48049 * 119.99990 * 180.02562 * 3 2 1 6 6 C 1.39175 * 119.68283 * 179.97438 * 5 3 2 7 7 C 1.38792 * 119.22127 * 180.02562 * 6 5 3 8 8 C 1.38283 * 118.58451 * 359.73787 * 7 6 5 9 9 C 1.50701 * 120.35158 * 180.26081 * 8 7 6 10 10 C 1.39479 * 119.29802 * 0.52783 * 8 7 6 11 11 N 1.38981 * 119.63447 * 179.72967 * 10 8 7 12 12 C 1.46499 * 119.99777 * 179.45293 * 11 10 8 13 13 C 1.53004 * 109.47198 * 180.27791 * 12 11 10 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47129 * 60.00316 * 19 17 15 21 21 H 1.48498 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47240 * 300.00255 * 19 17 15 23 23 N 1.32055 * 120.72879 * 359.45610 * 10 8 7 24 24 H 1.09004 * 109.46900 * 299.99643 * 1 2 3 25 25 H 1.08995 * 109.47199 * 59.99535 * 1 2 3 26 26 H 1.08993 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.38864 * 0.02562 * 6 5 3 28 28 H 1.07997 * 120.70511 * 180.02562 * 7 6 5 29 29 H 1.08997 * 109.46977 * 270.26566 * 9 8 7 30 30 H 1.08997 * 109.47418 * 30.26857 * 9 8 7 31 31 H 1.09003 * 109.47347 * 150.27395 * 9 8 7 32 32 H 0.97001 * 120.00373 * 359.73505 * 11 10 8 33 33 H 1.09009 * 109.47454 * 300.27561 * 12 11 10 34 34 H 1.08998 * 109.47492 * 60.27855 * 12 11 10 35 35 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 36 36 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 37 37 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 38 38 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 39 39 H 0.97000 * 120.00572 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4022 2.2185 0.0005 5 6 3.5420 1.2775 -0.0006 6 6 4.1670 2.5210 -0.0011 7 6 5.5536 2.5824 -0.0022 8 6 6.2683 1.3987 0.0029 9 6 7.7752 1.4189 0.0078 10 6 5.5798 0.1856 -0.0024 11 7 6.2912 -1.0083 -0.0030 12 6 5.5761 -2.2869 0.0036 13 6 6.5862 -3.4362 0.0084 14 6 5.8394 -4.7715 0.0159 15 6 6.8344 -5.9034 0.0200 16 1 7.8934 -5.6915 0.0178 17 6 6.3927 -7.2095 0.0264 18 7 5.1031 -7.4675 0.0286 19 14 7.6259 -8.6125 0.0321 20 1 8.4793 -8.5165 1.2436 21 1 6.9011 -9.9086 0.0381 22 1 8.4777 -8.5278 -1.1814 23 7 4.2595 0.1591 -0.0012 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.5799 3.4275 -0.0007 28 1 6.0634 3.5345 -0.0022 29 1 8.1418 1.4263 -1.0186 30 1 8.1248 2.3124 0.5249 31 1 8.1488 0.5326 0.5207 32 1 7.2611 -0.9951 -0.0038 33 1 4.9510 -2.3491 0.8945 34 1 4.9497 -2.3576 -0.8855 35 1 7.2113 -3.3740 -0.8824 36 1 7.2127 -3.3656 0.8976 37 1 5.2146 -4.8334 0.9069 38 1 5.2127 -4.8423 -0.8731 39 1 4.7923 -8.3864 0.0327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:43 Heat of formation + Delta-G solvation = -79.611779 kcal Electronic energy + Delta-G solvation = -20703.004800 eV Core-core repulsion = 17416.508322 eV Total energy + Delta-G solvation = -3286.496478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.92201 -40.88276 -37.81453 -37.41218 -35.56576 -34.73828 -33.50830 -31.27027 -29.66752 -28.35868 -27.82800 -25.32824 -24.17186 -23.17796 -22.53630 -21.72716 -19.51102 -18.59390 -18.39937 -17.52168 -17.35110 -17.10952 -16.47859 -16.44020 -16.10022 -15.42992 -15.34125 -14.77765 -14.37343 -14.26405 -14.14242 -13.83528 -13.67754 -13.40441 -13.38464 -13.05968 -12.74253 -12.67645 -12.51163 -12.31722 -12.03079 -11.85561 -11.81235 -11.47646 -11.19417 -11.19122 -10.57318 -10.53961 -10.52194 -8.70012 -8.18409 -6.30197 -0.49657 0.43918 1.31848 1.41849 1.45012 1.52844 1.58502 2.21007 2.43297 2.82109 3.15027 3.20258 3.77575 3.91517 4.00802 4.20368 4.21162 4.25862 4.26998 4.29365 4.35446 4.59818 4.65001 4.73121 4.85264 4.95590 4.99752 5.08786 5.13357 5.18662 5.19691 5.26749 5.49577 5.55958 5.72305 5.84983 6.02461 6.22996 6.31388 6.58019 6.86822 7.19058 7.39313 8.93493 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.003595 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.772031 B = 7785.727507 C = 9349.129040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.523 3.477 4 O -0.518 6.518 5 C 0.097 3.903 6 C -0.156 4.156 7 C -0.040 4.040 8 C -0.159 4.159 9 C -0.108 4.108 10 C 0.381 3.619 11 N -0.713 5.713 12 C 0.149 3.851 13 C -0.103 4.103 14 C 0.027 3.973 15 C -0.543 4.543 16 H 0.065 0.935 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.266 1.266 23 N -0.531 5.531 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.123 0.877 27 H 0.158 0.842 28 H 0.187 0.813 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.419 0.581 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.064 0.936 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.439 22.275 -0.088 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.368 3.632 4 O -0.408 6.408 5 C -0.038 4.038 6 C -0.180 4.180 7 C -0.064 4.064 8 C -0.167 4.167 9 C -0.165 4.165 10 C 0.142 3.858 11 N -0.349 5.349 12 C 0.024 3.976 13 C -0.141 4.141 14 C -0.011 4.011 15 C -0.581 4.581 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.190 1.190 23 N -0.252 5.252 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.141 0.859 27 H 0.176 0.824 28 H 0.204 0.796 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.496 21.435 -0.088 21.440 hybrid contribution 0.269 -0.506 0.007 0.574 sum 0.765 20.928 -0.080 20.942 Atomic orbital electron populations 1.23631 0.74297 1.05673 1.03080 1.86732 1.25252 1.31940 1.82866 1.21160 0.88544 0.81552 0.71985 1.90787 1.66359 1.36393 1.47213 1.19758 0.89808 0.90331 1.03934 1.21985 0.96279 0.96944 1.02765 1.21659 0.92007 0.99221 0.93552 1.20905 0.99353 0.91312 1.05102 1.20788 0.87300 1.04491 1.03872 1.18514 0.87390 0.87444 0.92496 1.44655 1.08594 1.01814 1.79792 1.21041 0.94531 0.81907 1.00100 1.21593 0.97561 0.93199 1.01702 1.18906 0.95118 0.92146 0.94947 1.21658 0.93837 0.91949 1.50669 0.91640 1.26013 0.97131 1.02105 0.94720 1.70106 1.15319 1.20464 1.51565 0.85478 0.78658 0.77504 0.79261 1.19027 1.21101 1.19033 1.67006 1.07336 1.31748 1.19101 0.91107 0.91110 0.85853 0.82389 0.79551 0.89430 0.88287 0.91363 0.74049 0.93903 0.93862 0.91710 0.91734 0.99068 0.99067 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.75 16 2 O -0.35 -10.90 10.38 -55.94 -0.58 -11.49 16 3 C 0.52 16.08 7.95 70.43 0.56 16.64 16 4 O -0.52 -16.07 16.10 20.05 0.32 -15.75 16 5 C 0.10 2.85 6.74 41.82 0.28 3.14 16 6 C -0.16 -3.37 9.63 22.63 0.22 -3.15 16 7 C -0.04 -0.64 9.83 22.41 0.22 -0.42 16 8 C -0.16 -3.09 5.92 -19.55 -0.12 -3.20 16 9 C -0.11 -1.26 9.58 71.24 0.68 -0.58 16 10 C 0.38 10.70 7.47 133.26 0.99 11.70 16 11 N -0.71 -20.16 5.61 -345.04 -1.94 -22.10 16 12 C 0.15 5.40 5.69 86.38 0.49 5.89 16 13 C -0.10 -4.06 5.27 30.59 0.16 -3.89 16 14 C 0.03 1.40 4.97 29.85 0.15 1.55 16 15 C -0.54 -30.62 9.11 25.60 0.23 -30.38 16 16 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 17 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 18 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 19 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 N -0.53 -17.58 9.32 -182.42 -1.70 -19.28 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.16 2.88 7.63 -2.91 -0.02 2.86 16 28 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.69 8.09 -2.39 -0.02 0.67 16 31 H 0.07 0.83 6.56 -2.39 -0.02 0.82 16 32 H 0.42 9.40 6.44 -92.71 -0.60 8.80 16 33 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 39 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -73.45 337.98 4.41 -69.04 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.46 Total: 11.36 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.54 Total: -0.61 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -3.35 Total: -98.48 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.26 Total: -27.23 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -73.45 4.41 -69.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.573 kcal (2) G-P(sol) polarization free energy of solvation -73.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds