Wall clock time and date at job start Tue Mar 31 2020 00:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34770 * 116.99899 * 2 1 4 4 O 1.21524 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.47281 * 119.99783 * 180.02562 * 3 2 1 6 6 C 1.40036 * 120.61888 * 90.02161 * 5 3 2 7 7 C 1.50703 * 120.81624 * 359.97438 * 6 5 3 8 8 C 1.38313 * 118.36732 * 179.97438 * 6 5 3 9 9 C 1.38392 * 119.50958 * 0.02562 * 8 6 5 10 10 N 1.31841 * 121.23471 * 359.73845 * 9 8 6 11 11 C 1.32427 * 121.78021 * 0.53242 * 10 9 8 12 12 N 1.38231 * 119.83177 * 179.75076 * 11 10 9 13 13 C 1.46496 * 119.99768 * 359.72481 * 12 11 10 14 14 C 1.53006 * 109.46995 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00079 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99685 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46672 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46691 * 119.99941 * 20 18 16 23 23 H 1.48497 * 109.47025 * 240.00323 * 20 18 16 24 24 H 1.08994 * 109.47077 * 60.00159 * 1 2 3 25 25 H 1.09000 * 109.47002 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.46816 * 299.99901 * 1 2 3 27 27 H 1.08999 * 109.47002 * 90.00012 * 7 6 5 28 28 H 1.09008 * 109.47065 * 210.00199 * 7 6 5 29 29 H 1.08995 * 109.47071 * 330.00193 * 7 6 5 30 30 H 1.07992 * 120.24185 * 179.97438 * 8 6 5 31 31 H 1.08008 * 119.38041 * 180.02562 * 9 8 6 32 32 H 0.96998 * 120.00040 * 179.72843 * 12 11 10 33 33 H 1.09001 * 109.47464 * 60.00528 * 13 12 11 34 34 H 1.09001 * 109.47459 * 300.00244 * 13 12 11 35 35 H 1.09001 * 109.47002 * 299.99701 * 14 13 12 36 36 H 1.08993 * 109.46955 * 60.00138 * 14 13 12 37 37 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 38 38 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 39 39 H 0.96999 * 119.99910 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5347 1.2779 -0.0006 6 6 4.2464 1.3159 -1.2060 7 6 3.5263 1.2784 -2.5293 8 6 5.6266 1.3887 -1.1522 9 6 6.2601 1.4211 0.0778 10 7 5.5722 1.3890 1.2021 11 6 4.2501 1.3142 1.2090 12 7 3.5697 1.2778 2.4117 13 6 4.3115 1.3159 3.6744 14 6 3.3281 1.2630 4.8454 15 6 4.1028 1.3035 6.1641 16 6 3.1342 1.2520 7.3174 17 1 2.0723 1.1956 7.1288 18 6 3.6038 1.2759 8.6137 19 7 4.8969 1.3441 8.8434 20 14 2.4032 1.2113 10.0433 21 1 1.0150 1.1377 9.5209 22 1 2.6842 0.0113 10.8717 23 1 2.5560 2.4330 10.8735 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.2985 2.2956 -2.8479 28 1 4.1602 0.7975 -3.2744 29 1 2.5994 0.7149 -2.4226 30 1 6.2056 1.4192 -2.0632 31 1 7.3379 1.4784 0.1174 32 1 2.6010 1.2269 2.4196 33 1 4.8911 2.2375 3.7276 34 1 4.9844 0.4600 3.7265 35 1 2.6549 2.1187 4.7935 36 1 2.7489 0.3412 4.7920 37 1 4.7763 0.4480 6.2163 38 1 4.6818 2.2255 6.2172 39 1 5.2272 1.3612 9.7553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:14 Heat of formation + Delta-G solvation = -64.595816 kcal Electronic energy + Delta-G solvation = -21017.569754 eV Core-core repulsion = 17731.724416 eV Total energy + Delta-G solvation = -3285.845337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05484 -39.67575 -36.54725 -36.54318 -34.11345 -33.57130 -31.85912 -29.84838 -28.40643 -27.75141 -26.34488 -24.43634 -23.22115 -21.55644 -20.98758 -20.38852 -18.08460 -17.57060 -17.14394 -16.95021 -16.31235 -15.83313 -15.09829 -14.98942 -14.51476 -14.24155 -14.16405 -14.02242 -13.37736 -13.26434 -13.01708 -12.84420 -12.39523 -12.30445 -12.09886 -11.94221 -11.74705 -10.99569 -10.96039 -10.88193 -10.72770 -10.54893 -10.25264 -9.72617 -9.66351 -9.58057 -9.40215 -9.11344 -8.37435 -7.74035 -6.02067 -4.04785 0.88638 1.35682 1.88612 2.57872 3.22893 3.30124 3.37607 3.41686 3.73339 4.33132 4.44574 4.53478 4.65414 4.86797 4.90365 4.95499 5.01952 5.24763 5.25980 5.33378 5.33904 5.36198 5.62345 5.67460 5.75960 5.79000 6.01678 6.16476 6.17724 6.35729 6.60310 6.69548 6.94591 7.18431 7.34990 7.50657 7.63502 7.75953 7.96870 8.15747 8.38425 9.01821 9.59369 11.09272 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.003579 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.984134 B = 7821.140301 C = 8895.463611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.526 3.474 4 O -0.494 6.494 5 C -0.251 4.251 6 C 0.042 3.958 7 C -0.123 4.123 8 C -0.250 4.250 9 C 0.182 3.818 10 N -0.537 5.537 11 C 0.452 3.548 12 N -0.707 5.707 13 C 0.126 3.874 14 C -0.124 4.124 15 C 0.026 3.974 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.162 0.838 32 H 0.404 0.596 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.420 -2.474 -23.798 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.268 6.268 3 C 0.368 3.632 4 O -0.381 6.381 5 C -0.260 4.260 6 C 0.034 3.966 7 C -0.180 4.180 8 C -0.273 4.273 9 C 0.021 3.979 10 N -0.255 5.255 11 C 0.213 3.787 12 N -0.334 5.334 13 C 0.004 3.996 14 C -0.162 4.162 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.179 0.821 32 H 0.240 0.760 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.033 -2.140 -22.612 22.804 hybrid contribution -1.588 -0.011 0.126 1.593 sum -3.622 -2.151 -22.486 22.877 Atomic orbital electron populations 1.23346 0.76213 1.03974 1.02751 1.86733 1.23403 1.32838 1.83830 1.20995 0.88724 0.81573 0.71954 1.90879 1.66739 1.36096 1.44365 1.19060 0.89675 1.22896 0.94412 1.19935 0.93643 0.89800 0.93172 1.20925 1.00338 1.03276 0.93413 1.21543 0.93529 1.12598 0.99677 1.22687 1.00008 0.88511 0.86672 1.67412 1.05215 1.21685 1.31206 1.18184 0.88354 0.87337 0.84796 1.44940 1.08707 1.76292 1.03488 1.21689 0.95117 1.02196 0.80619 1.21927 0.98068 1.00847 0.95379 1.19012 0.95375 0.97680 0.89093 1.21246 0.93204 1.50618 0.90945 0.92641 1.25027 0.95126 0.95269 0.99029 1.69974 1.12297 1.50586 1.20413 0.86527 0.81337 0.77616 0.82468 1.19772 1.20980 1.20975 0.91846 0.87842 0.91524 0.89863 0.90030 0.91462 0.84486 0.82118 0.76036 0.91500 0.91442 0.92818 0.92803 0.96190 0.96203 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.57 101.05 1.07 1.34 16 2 O -0.35 -4.38 10.58 -40.68 -0.43 -4.81 16 3 C 0.53 7.44 4.76 34.41 0.16 7.60 16 4 O -0.49 -7.99 16.90 -19.28 -0.33 -8.31 16 5 C -0.25 -3.56 5.78 -104.67 -0.61 -4.17 16 6 C 0.04 0.48 5.95 -103.92 -0.62 -0.14 16 7 C -0.12 -1.03 9.69 36.01 0.35 -0.68 16 8 C -0.25 -2.49 9.79 -39.50 -0.39 -2.87 16 9 C 0.18 2.07 11.16 -17.49 -0.20 1.88 16 10 N -0.54 -8.18 9.54 -12.19 -0.12 -8.30 16 11 C 0.45 7.13 7.49 -155.20 -1.16 5.97 16 12 N -0.71 -11.58 5.62 -60.22 -0.34 -11.91 16 13 C 0.13 2.29 5.68 -4.04 -0.02 2.26 16 14 C -0.12 -2.54 5.27 -26.73 -0.14 -2.68 16 15 C 0.03 0.67 4.97 -27.89 -0.14 0.53 16 16 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 20 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.49 8.10 -51.92 -0.42 0.07 16 29 H 0.07 0.59 7.19 -51.93 -0.37 0.22 16 30 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.40 6.29 7.30 -40.82 -0.30 6.00 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -33.23 338.62 -8.20 -41.43 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.71 Total: 0.78 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.10 Total: -4.51 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.28 Total: -46.36 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.76 Total: -13.12 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.23 -8.20 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.162 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds