Wall clock time and date at job start Tue Mar 31 2020 00:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34757 * 116.99924 * 2 1 4 4 O 1.21511 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.47407 * 119.99759 * 180.02562 * 3 2 1 6 6 C 1.39658 * 120.48146 * 353.91576 * 5 3 2 7 7 N 1.31629 * 120.50643 * 179.70631 * 6 5 3 8 8 C 1.32637 * 121.64631 * 0.02562 * 7 6 5 9 9 N 1.38438 * 119.53685 * 180.02562 * 8 7 6 10 10 C 1.46494 * 120.00141 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47456 * 180.02562 * 10 9 8 12 12 C 1.52990 * 109.47588 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47182 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99858 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99900 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00078 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00050 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47049 * 59.99848 * 17 15 13 19 19 H 1.48500 * 109.47360 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47053 * 299.99964 * 17 15 13 21 21 C 1.39382 * 120.93351 * 0.02562 * 8 7 6 22 22 C 1.36866 * 119.38416 * 359.93516 * 21 8 7 23 23 C 1.50707 * 120.75052 * 180.02562 * 22 21 8 24 24 H 1.08998 * 109.47256 * 59.99685 * 1 2 3 25 25 H 1.09001 * 109.47424 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47120 * 299.99736 * 1 2 3 27 27 H 1.07992 * 119.74490 * 359.71951 * 6 5 3 28 28 H 0.97000 * 119.99731 * 0.02562 * 9 8 7 29 29 H 1.09006 * 109.47715 * 300.00441 * 10 9 8 30 30 H 1.09001 * 109.47024 * 60.00193 * 10 9 8 31 31 H 1.09006 * 109.46707 * 300.00677 * 11 10 9 32 32 H 1.09004 * 109.46733 * 59.99609 * 11 10 9 33 33 H 1.08992 * 109.47491 * 299.99934 * 12 11 10 34 34 H 1.09004 * 109.47488 * 59.99966 * 12 11 10 35 35 H 0.97003 * 119.99703 * 180.02562 * 16 15 13 36 36 H 1.07998 * 120.30558 * 180.02562 * 21 8 7 37 37 H 1.08998 * 109.46684 * 263.63135 * 23 22 21 38 38 H 1.08998 * 109.47033 * 23.63634 * 23 22 21 39 39 H 1.09001 * 109.46418 * 143.63684 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5358 1.2778 -0.0006 6 6 4.3059 0.1197 0.1265 7 7 5.6204 0.1873 0.1202 8 6 6.2571 1.3442 -0.0049 9 7 7.6414 1.3646 -0.0065 10 6 8.3550 2.6365 -0.1447 11 6 9.8632 2.3808 -0.1168 12 6 10.6085 3.7092 -0.2604 13 6 12.0941 3.4573 -0.2323 14 1 12.4690 2.4504 -0.1233 15 6 12.9744 4.5122 -0.3467 16 7 12.5178 5.7383 -0.4799 17 14 14.8159 4.1999 -0.3126 18 1 15.1862 3.3002 -1.4344 19 1 15.5393 5.4893 -0.4519 20 1 15.1859 3.5621 0.9763 21 6 5.5523 2.5396 -0.1349 22 6 4.1838 2.5157 -0.1343 23 6 3.3909 3.7898 -0.2734 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.8191 -0.8387 0.2304 28 1 8.1387 0.5367 0.0831 29 1 8.0836 3.1046 -1.0910 30 1 8.0828 3.2971 0.6786 31 1 10.1349 1.9126 0.8294 32 1 10.1350 1.7203 -0.9402 33 1 10.3370 4.1777 -1.2062 34 1 10.3367 4.3693 0.5633 35 1 13.1372 6.4804 -0.5608 36 1 6.0810 3.4757 -0.2365 37 1 3.1013 4.1472 0.7148 38 1 4.0009 4.5451 -0.7687 39 1 2.4969 3.5982 -0.8668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:18 Heat of formation + Delta-G solvation = -64.088731 kcal Electronic energy + Delta-G solvation = -20407.897417 eV Core-core repulsion = 17122.074069 eV Total energy + Delta-G solvation = -3285.823349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.97207 -39.80490 -36.87147 -36.37584 -34.04145 -33.55415 -31.79842 -30.15357 -28.16513 -27.54647 -26.64463 -24.25101 -22.66528 -22.39585 -21.01204 -20.37044 -18.09149 -17.31446 -16.91655 -16.66927 -16.50884 -16.13959 -15.22114 -14.73418 -14.55354 -14.36843 -14.28816 -14.04658 -13.40275 -12.98559 -12.91320 -12.60653 -12.41982 -12.28244 -12.27439 -12.08361 -11.89818 -10.98673 -10.97255 -10.84570 -10.66192 -10.41616 -10.29951 -9.85276 -9.61335 -9.59717 -9.51212 -9.23114 -8.43774 -7.81772 -6.08838 -4.12033 0.70081 1.26850 2.50300 2.57239 3.13347 3.28423 3.33313 3.35624 3.80589 4.39074 4.45366 4.59656 4.72057 4.86263 4.89654 4.93796 5.05851 5.26921 5.27323 5.43686 5.45315 5.53308 5.63073 5.67462 5.72414 5.91626 5.98520 6.04120 6.33042 6.42083 6.42901 6.56154 6.84170 6.97173 7.51737 7.53023 7.64392 7.65350 7.88807 8.04167 8.30081 8.93981 9.52724 11.02358 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.049884 B = 0.002555 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.168886 B =10955.270926 C =11478.109007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.360 6.360 3 C 0.522 3.478 4 O -0.514 6.514 5 C -0.268 4.268 6 C 0.221 3.779 7 N -0.561 5.561 8 C 0.440 3.560 9 N -0.701 5.701 10 C 0.116 3.884 11 C -0.121 4.121 12 C 0.025 3.975 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.256 4.256 22 C 0.065 3.935 23 C -0.124 4.124 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.167 0.833 28 H 0.408 0.592 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.143 0.857 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.534 -9.674 0.757 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.368 3.632 4 O -0.404 6.404 5 C -0.276 4.276 6 C 0.059 3.941 7 N -0.280 5.280 8 C 0.202 3.798 9 N -0.327 5.327 10 C -0.007 4.007 11 C -0.159 4.159 12 C -0.012 4.012 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.281 4.281 22 C 0.058 3.942 23 C -0.181 4.181 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.184 0.816 28 H 0.244 0.756 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.161 0.839 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.023 -9.706 0.791 23.169 hybrid contribution 0.612 0.365 -0.013 0.713 sum -20.411 -9.341 0.778 22.460 Atomic orbital electron populations 1.23225 0.76274 1.03539 1.02494 1.86541 1.23323 1.33047 1.84771 1.20874 0.88681 0.81187 0.72416 1.90778 1.66974 1.35517 1.47155 1.19492 0.89816 0.95678 1.22574 1.22782 0.87755 0.97418 0.86166 1.67363 1.10499 1.26654 1.23468 1.18723 0.85969 0.89205 0.85919 1.45037 1.01618 1.11417 1.74658 1.21885 0.93845 0.83595 1.01388 1.21892 0.90276 1.02380 1.01373 1.19022 0.94493 0.90189 0.97536 1.21145 0.91219 0.93350 1.50557 0.92643 1.25021 0.99087 0.95146 0.95146 1.69944 1.34890 0.98694 1.49770 0.86625 0.85118 0.77430 0.78648 1.20198 1.21236 1.20204 1.21053 0.93619 0.98792 1.14604 1.19805 0.93022 0.94287 0.87113 1.21121 1.00357 0.92921 1.03656 0.91975 0.88165 0.91958 0.81571 0.75645 0.91534 0.91526 0.92427 0.92423 0.96240 0.96240 0.92810 0.83946 0.90000 0.91412 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.33 16 2 O -0.36 -3.63 9.85 -40.65 -0.40 -4.03 16 3 C 0.52 6.33 7.84 34.46 0.27 6.60 16 4 O -0.51 -6.99 13.27 -19.27 -0.26 -7.25 16 5 C -0.27 -3.35 5.89 -104.83 -0.62 -3.97 16 6 C 0.22 2.65 10.79 -17.11 -0.18 2.47 16 7 N -0.56 -7.76 10.38 -12.13 -0.13 -7.88 16 8 C 0.44 6.21 7.64 -155.27 -1.19 5.02 16 9 N -0.70 -9.76 5.71 -60.45 -0.34 -10.10 16 10 C 0.12 1.75 4.87 -4.04 -0.02 1.73 16 11 C -0.12 -2.22 5.27 -26.74 -0.14 -2.36 16 12 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 13 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.26 -3.39 8.91 -39.65 -0.35 -3.74 16 22 C 0.06 0.82 5.91 -104.31 -0.62 0.21 16 23 C -0.12 -1.39 8.83 36.01 0.32 -1.07 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.17 1.55 7.63 -52.49 -0.40 1.15 16 28 H 0.41 5.36 8.59 -40.82 -0.35 5.01 16 29 H 0.07 0.99 7.91 -51.93 -0.41 0.58 16 30 H 0.07 1.00 7.91 -51.93 -0.41 0.59 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.14 1.77 6.66 -52.49 -0.35 1.42 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.66 8.06 -51.93 -0.42 0.25 16 39 H 0.09 1.12 5.94 -51.93 -0.31 0.81 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -30.64 333.28 -7.97 -38.62 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.57 Total: 1.22 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -2.01 Total: -6.35 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.27 Total: -43.32 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.66 Total: -11.28 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.64 -7.97 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.473 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds