Wall clock time and date at job start Tue Mar 31 2020 00:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34757 * 116.99924 * 2 1 4 4 O 1.21511 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.47407 * 119.99759 * 180.02562 * 3 2 1 6 6 C 1.39658 * 120.48146 * 353.91576 * 5 3 2 7 7 N 1.31629 * 120.50643 * 179.70631 * 6 5 3 8 8 C 1.32637 * 121.64631 * 0.02562 * 7 6 5 9 9 N 1.38438 * 119.53685 * 180.02562 * 8 7 6 10 10 C 1.46494 * 120.00141 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47456 * 180.02562 * 10 9 8 12 12 C 1.52990 * 109.47588 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47182 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99858 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99900 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00078 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00050 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47049 * 59.99848 * 17 15 13 19 19 H 1.48500 * 109.47360 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47053 * 299.99964 * 17 15 13 21 21 C 1.39382 * 120.93351 * 0.02562 * 8 7 6 22 22 C 1.36866 * 119.38416 * 359.93516 * 21 8 7 23 23 C 1.50707 * 120.75052 * 180.02562 * 22 21 8 24 24 H 1.08998 * 109.47256 * 59.99685 * 1 2 3 25 25 H 1.09001 * 109.47424 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47120 * 299.99736 * 1 2 3 27 27 H 1.07992 * 119.74490 * 359.71951 * 6 5 3 28 28 H 0.97000 * 119.99731 * 0.02562 * 9 8 7 29 29 H 1.09006 * 109.47715 * 300.00441 * 10 9 8 30 30 H 1.09001 * 109.47024 * 60.00193 * 10 9 8 31 31 H 1.09006 * 109.46707 * 300.00677 * 11 10 9 32 32 H 1.09004 * 109.46733 * 59.99609 * 11 10 9 33 33 H 1.08992 * 109.47491 * 299.99934 * 12 11 10 34 34 H 1.09004 * 109.47488 * 59.99966 * 12 11 10 35 35 H 0.97003 * 119.99703 * 180.02562 * 16 15 13 36 36 H 1.07998 * 120.30558 * 180.02562 * 21 8 7 37 37 H 1.08998 * 109.46684 * 263.63135 * 23 22 21 38 38 H 1.08998 * 109.47033 * 23.63634 * 23 22 21 39 39 H 1.09001 * 109.46418 * 143.63684 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5358 1.2778 -0.0006 6 6 4.3059 0.1197 0.1265 7 7 5.6204 0.1873 0.1202 8 6 6.2571 1.3442 -0.0049 9 7 7.6414 1.3646 -0.0065 10 6 8.3550 2.6365 -0.1447 11 6 9.8632 2.3808 -0.1168 12 6 10.6085 3.7092 -0.2604 13 6 12.0941 3.4573 -0.2323 14 1 12.4690 2.4504 -0.1233 15 6 12.9744 4.5122 -0.3467 16 7 12.5178 5.7383 -0.4799 17 14 14.8159 4.1999 -0.3126 18 1 15.1862 3.3002 -1.4344 19 1 15.5393 5.4893 -0.4519 20 1 15.1859 3.5621 0.9763 21 6 5.5523 2.5396 -0.1349 22 6 4.1838 2.5157 -0.1343 23 6 3.3909 3.7898 -0.2734 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.8191 -0.8387 0.2304 28 1 8.1387 0.5367 0.0831 29 1 8.0836 3.1046 -1.0910 30 1 8.0828 3.2971 0.6786 31 1 10.1349 1.9126 0.8294 32 1 10.1350 1.7203 -0.9402 33 1 10.3370 4.1777 -1.2062 34 1 10.3367 4.3693 0.5633 35 1 13.1372 6.4804 -0.5608 36 1 6.0810 3.4757 -0.2365 37 1 3.1013 4.1472 0.7148 38 1 4.0009 4.5451 -0.7687 39 1 2.4969 3.5982 -0.8668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:17 Heat of formation + Delta-G solvation = -81.606016 kcal Electronic energy + Delta-G solvation = -20408.657024 eV Core-core repulsion = 17122.074069 eV Total energy + Delta-G solvation = -3286.582955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.92155 -40.74443 -37.92329 -37.42259 -35.59449 -34.79418 -33.41928 -31.33363 -29.14169 -28.54757 -27.93905 -25.64117 -23.97930 -23.47583 -22.05073 -21.83617 -19.04151 -18.52860 -18.26315 -17.88591 -17.44912 -17.25429 -16.50127 -16.48780 -15.64394 -15.54334 -15.38446 -14.90217 -14.38728 -14.30756 -13.87594 -13.85692 -13.71933 -13.55873 -13.48378 -13.24806 -12.90480 -12.76519 -12.53338 -12.40185 -11.80932 -11.73259 -11.48906 -11.34693 -11.22021 -11.14981 -10.61509 -10.54150 -10.53179 -8.87723 -8.20091 -6.30345 -0.28826 0.28284 1.41763 1.43605 1.51475 1.55142 1.77133 2.03274 2.42061 2.80897 3.14034 3.50172 3.69141 3.81613 3.88005 4.04393 4.20226 4.20315 4.37373 4.40542 4.53471 4.53746 4.72746 4.74108 4.75572 4.79762 4.91210 4.93422 5.10356 5.15708 5.19942 5.43112 5.50771 5.53801 5.72112 5.84307 5.85875 6.23901 6.46265 6.75881 6.86392 7.01644 7.38889 8.91266 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.049884 B = 0.002555 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.168886 B =10955.270926 C =11478.109007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.524 3.476 4 O -0.533 6.533 5 C -0.274 4.274 6 C 0.224 3.776 7 N -0.573 5.573 8 C 0.429 3.571 9 N -0.700 5.700 10 C 0.132 3.868 11 C -0.105 4.105 12 C 0.026 3.974 13 C -0.544 4.544 14 H 0.061 0.939 15 C 0.000 4.000 16 N -0.931 5.931 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.268 1.268 21 C -0.263 4.263 22 C 0.059 3.941 23 C -0.120 4.120 24 H 0.061 0.939 25 H 0.133 0.867 26 H 0.062 0.938 27 H 0.193 0.807 28 H 0.411 0.589 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.061 0.939 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.263 0.737 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.035 -11.135 0.878 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.276 6.276 3 C 0.371 3.629 4 O -0.424 6.424 5 C -0.281 4.281 6 C 0.062 3.938 7 N -0.292 5.292 8 C 0.191 3.809 9 N -0.328 5.328 10 C 0.008 3.992 11 C -0.143 4.143 12 C -0.011 4.011 13 C -0.582 4.582 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.571 5.571 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.193 1.193 21 C -0.288 4.288 22 C 0.052 3.948 23 C -0.176 4.176 24 H 0.080 0.920 25 H 0.151 0.849 26 H 0.081 0.919 27 H 0.210 0.790 28 H 0.248 0.752 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.072 0.928 36 H 0.165 0.835 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.550 -11.204 0.914 24.306 hybrid contribution 0.629 0.777 -0.049 1.001 sum -20.922 -10.427 0.866 23.392 Atomic orbital electron populations 1.23548 0.74364 1.05750 1.02534 1.86526 1.25144 1.31754 1.84205 1.20808 0.88521 0.81540 0.72025 1.90771 1.67328 1.36265 1.48084 1.19668 0.90397 0.95838 1.22189 1.23182 0.87155 0.98369 0.85082 1.67386 1.11301 1.26576 1.23950 1.18828 0.85875 0.89707 0.86466 1.44786 1.01719 1.10903 1.75370 1.21541 0.91772 0.84227 1.01659 1.21591 0.91882 0.99150 1.01715 1.18916 0.94075 0.92616 0.95528 1.21651 0.92969 0.93636 1.49923 0.92093 1.25935 1.04049 0.94944 0.94854 1.70072 1.36501 0.99597 1.50950 0.85549 0.79283 0.77413 0.79105 1.19260 1.21049 1.19279 1.21141 0.93930 0.98811 1.14943 1.20035 0.93046 0.95084 0.86679 1.21097 1.00046 0.92651 1.03782 0.91976 0.84916 0.91935 0.78990 0.75213 0.91341 0.91363 0.92014 0.91992 0.98286 0.98302 0.92781 0.83503 0.89740 0.90208 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.36 -6.57 9.85 -56.68 -0.56 -7.13 16 3 C 0.52 12.03 7.84 70.24 0.55 12.58 16 4 O -0.53 -14.01 13.27 19.80 0.26 -13.75 16 5 C -0.27 -6.51 5.89 -20.00 -0.12 -6.63 16 6 C 0.22 5.00 10.79 85.07 0.92 5.92 16 7 N -0.57 -15.07 10.38 -192.29 -2.00 -17.07 16 8 C 0.43 11.67 7.64 133.24 1.02 12.69 16 9 N -0.70 -18.80 5.71 -345.18 -1.97 -20.77 16 10 C 0.13 3.90 4.87 86.38 0.42 4.32 16 11 C -0.11 -3.82 5.27 30.59 0.16 -3.66 16 12 C 0.03 1.29 4.97 29.85 0.15 1.44 16 13 C -0.54 -29.59 9.11 25.60 0.23 -29.35 16 14 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 15 C 0.00 0.01 5.46 84.65 0.46 0.47 16 16 N -0.93 -55.07 13.29 21.45 0.28 -54.78 16 17 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 21 C -0.26 -6.77 8.91 22.22 0.20 -6.57 16 22 C 0.06 1.44 5.91 -19.67 -0.12 1.32 16 23 C -0.12 -2.58 8.83 71.24 0.63 -1.95 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.19 3.12 7.63 -2.91 -0.02 3.10 16 28 H 0.41 10.34 8.59 -92.71 -0.80 9.54 16 29 H 0.07 2.01 7.91 -2.38 -0.02 1.99 16 30 H 0.07 2.01 7.91 -2.39 -0.02 1.99 16 31 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.06 2.18 8.14 -2.38 -0.02 2.17 16 33 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 35 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.15 3.55 6.66 -2.91 -0.02 3.53 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.49 8.06 -2.39 -0.02 1.47 16 39 H 0.09 2.02 5.94 -2.39 -0.01 2.01 16 Total: -1.00 -65.03 333.28 4.01 -61.02 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.26 Total: 15.17 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.70 Total: -7.85 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -3.68 Total: -92.62 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.30 Total: -20.88 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -65.03 4.01 -61.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.586 kcal (2) G-P(sol) polarization free energy of solvation -65.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds