Wall clock time and date at job start Tue Mar 31 2020 00:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34674 * 117.00352 * 2 1 4 4 O 1.21422 * 120.00190 * 0.02562 * 3 2 1 5 5 C 1.48093 * 120.00016 * 179.97438 * 3 2 1 6 6 N 1.32885 * 119.69084 * 353.97395 * 5 3 2 7 7 C 1.31602 * 121.82327 * 179.74874 * 6 5 3 8 8 C 1.38293 * 120.99873 * 0.53068 * 7 6 5 9 9 C 1.39375 * 119.26657 * 359.73618 * 8 7 6 10 10 N 1.39196 * 120.82985 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00385 * 0.02918 * 10 9 8 12 12 C 1.52996 * 109.47195 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46989 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47355 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99553 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00110 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00069 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99925 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46968 * 60.00365 * 18 16 14 20 20 H 1.48507 * 109.46828 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46873 * 299.99978 * 18 16 14 22 22 C 1.39036 * 119.69008 * 174.24730 * 5 3 2 23 23 C 1.50701 * 120.52417 * 359.95300 * 22 5 3 24 24 H 1.08999 * 109.47700 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47510 * 300.00209 * 1 2 3 26 26 H 1.09005 * 109.46649 * 59.99838 * 1 2 3 27 27 H 1.08002 * 119.50474 * 180.24620 * 7 6 5 28 28 H 1.07998 * 120.37180 * 179.76783 * 8 7 6 29 29 H 0.97001 * 119.99646 * 180.02562 * 10 9 8 30 30 H 1.09003 * 109.46500 * 300.00036 * 11 10 9 31 31 H 1.09001 * 109.47091 * 59.99353 * 11 10 9 32 32 H 1.08994 * 109.47119 * 299.99903 * 12 11 10 33 33 H 1.09001 * 109.47430 * 59.99805 * 12 11 10 34 34 H 1.09003 * 109.47057 * 299.99853 * 13 12 11 35 35 H 1.09001 * 109.47002 * 59.99777 * 13 12 11 36 36 H 0.97000 * 120.00047 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46569 * 83.34662 * 23 22 5 38 38 H 1.08993 * 109.47044 * 203.34552 * 23 22 5 39 39 H 1.09005 * 109.47035 * 323.34846 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4022 2.2183 0.0005 5 6 3.5423 1.2773 0.0006 6 7 4.2596 0.1653 0.1223 7 6 5.5755 0.1849 0.1231 8 6 6.2701 1.3751 0.0071 9 6 5.5611 2.5685 -0.1178 10 7 6.2272 3.7850 -0.2360 11 6 7.6917 3.8218 -0.2309 12 6 8.1660 5.2694 -0.3743 13 6 9.6955 5.3078 -0.3683 14 6 10.1627 6.7337 -0.5088 15 1 9.4408 7.5326 -0.5934 16 6 11.5116 7.0184 -0.5282 17 7 12.3906 6.0456 -0.4247 18 14 12.0907 8.7858 -0.7032 19 1 11.5703 9.5916 0.4304 20 1 13.5753 8.8231 -0.6972 21 1 11.5869 9.3474 -1.9823 22 6 4.1673 2.5134 -0.1205 23 6 3.3517 3.7737 -0.2532 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 6.1212 -0.7420 0.2203 28 1 7.3501 1.3798 0.0126 29 1 5.7216 4.6084 -0.3219 30 1 8.0622 3.4089 0.7073 31 1 8.0729 3.2308 -1.0637 32 1 7.7954 5.6819 -1.3126 33 1 7.7847 5.8608 0.4582 34 1 10.0656 4.8955 0.5704 35 1 10.0770 4.7164 -1.2006 36 1 13.3395 6.2459 -0.4380 37 1 3.0485 4.1160 0.7362 38 1 3.9510 4.5450 -0.7367 39 1 2.4657 3.5714 -0.8551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:23 Heat of formation + Delta-G solvation = -59.339668 kcal Electronic energy + Delta-G solvation = -20584.820822 eV Core-core repulsion = 17299.203409 eV Total energy + Delta-G solvation = -3285.617414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06007 -39.78705 -36.82755 -36.73044 -34.12766 -32.93089 -31.93260 -30.14255 -28.38015 -27.23435 -26.65042 -24.43833 -22.92207 -22.16626 -20.96702 -20.47714 -18.48636 -17.35654 -16.80126 -16.59410 -16.21352 -16.03022 -15.12896 -15.05272 -14.60087 -14.38533 -14.17921 -14.09207 -13.53406 -13.30617 -12.76754 -12.57980 -12.47481 -12.32315 -12.26189 -11.95818 -11.75788 -11.04415 -10.97344 -10.81888 -10.66823 -10.63690 -10.45284 -9.88960 -9.63878 -9.50874 -9.23642 -9.16950 -8.44682 -7.76120 -6.09725 -4.12992 0.50334 1.37765 2.35446 2.41665 3.27413 3.32321 3.33541 3.39596 3.79399 4.13784 4.38192 4.62291 4.73423 4.85273 4.87050 4.94901 5.14756 5.26379 5.28137 5.39083 5.44499 5.52120 5.55120 5.63743 5.82167 5.92975 5.95567 5.96057 6.20518 6.43220 6.43402 6.57086 6.84793 7.16390 7.44299 7.52141 7.60865 7.63847 7.87962 7.93465 8.29250 8.93011 9.51796 11.01468 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044357 B = 0.002695 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.084967 B =10386.632918 C =10979.650485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C 0.525 3.475 4 O -0.497 6.497 5 C 0.116 3.884 6 N -0.485 5.485 7 C 0.132 3.868 8 C -0.222 4.222 9 C 0.249 3.751 10 N -0.724 5.724 11 C 0.115 3.885 12 C -0.121 4.121 13 C 0.025 3.975 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.146 4.146 23 C -0.109 4.109 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.162 0.838 28 H 0.143 0.857 29 H 0.403 0.597 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.184 -11.502 0.762 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C 0.369 3.631 4 O -0.384 6.384 5 C -0.019 4.019 6 N -0.200 5.200 7 C -0.028 4.028 8 C -0.248 4.248 9 C 0.134 3.866 10 N -0.352 5.352 11 C -0.008 4.008 12 C -0.159 4.159 13 C -0.012 4.012 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.154 4.154 23 C -0.166 4.166 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.179 0.821 28 H 0.160 0.840 29 H 0.240 0.760 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.465 -12.015 0.848 22.890 hybrid contribution 0.652 2.075 -0.185 2.183 sum -18.812 -9.940 0.663 21.287 Atomic orbital electron populations 1.23316 0.76433 1.03812 1.02492 1.86693 1.22885 1.31992 1.83464 1.20922 0.88084 0.81499 0.72618 1.90795 1.66299 1.35654 1.45688 1.19385 0.90154 0.89370 1.03018 1.67631 1.08271 1.29012 1.15053 1.22469 0.88984 0.97517 0.93796 1.21942 1.01893 0.91878 1.09070 1.17824 0.90100 0.87681 0.91004 1.45132 1.07218 1.05239 1.77584 1.21785 0.77193 1.00544 1.01232 1.21872 1.01071 0.91944 1.01033 1.19019 0.87167 0.97450 0.97573 1.21148 0.91693 0.92797 1.50657 0.92698 1.25020 0.96935 0.97273 0.95160 1.69943 1.01583 1.31594 1.50171 0.86630 0.77557 0.84942 0.78717 1.20204 1.21213 1.20208 1.20256 0.92464 0.96173 1.06536 1.20868 0.99687 0.92802 1.03226 0.87956 0.91850 0.91875 0.82057 0.83971 0.75981 0.91898 0.91917 0.92611 0.92601 0.96284 0.96283 0.92805 0.90700 0.92433 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.34 -4.03 10.39 -40.42 -0.42 -4.45 16 3 C 0.52 7.01 7.89 34.77 0.27 7.29 16 4 O -0.50 -6.88 13.09 -19.21 -0.25 -7.13 16 5 C 0.12 1.60 6.74 -83.07 -0.56 1.04 16 6 N -0.49 -6.65 10.12 -9.90 -0.10 -6.75 16 7 C 0.13 1.54 11.17 -17.63 -0.20 1.34 16 8 C -0.22 -2.71 9.39 -39.14 -0.37 -3.08 16 9 C 0.25 3.30 6.67 -83.63 -0.56 2.74 16 10 N -0.72 -9.58 5.64 -58.48 -0.33 -9.91 16 11 C 0.12 1.73 4.95 -4.04 -0.02 1.71 16 12 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 13 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.15 -1.93 5.95 -103.86 -0.62 -2.55 16 23 C -0.11 -1.28 8.47 36.01 0.31 -0.97 16 24 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.14 1.57 6.88 -52.49 -0.36 1.21 16 29 H 0.40 4.92 6.49 -40.82 -0.26 4.66 16 30 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 31 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.60 6.35 -51.93 -0.33 0.27 16 39 H 0.09 1.15 5.85 -51.93 -0.30 0.84 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -30.90 330.76 -7.20 -38.10 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.43 Total: 0.47 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.36 Total: -6.08 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.31 Total: -41.96 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.67 Total: -11.59 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.90 -7.20 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.235 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds