Wall clock time and date at job start Tue Mar 31 2020 00:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34674 * 117.00352 * 2 1 4 4 O 1.21422 * 120.00190 * 0.02562 * 3 2 1 5 5 C 1.48093 * 120.00016 * 179.97438 * 3 2 1 6 6 N 1.32885 * 119.69084 * 353.97395 * 5 3 2 7 7 C 1.31602 * 121.82327 * 179.74874 * 6 5 3 8 8 C 1.38293 * 120.99873 * 0.53068 * 7 6 5 9 9 C 1.39375 * 119.26657 * 359.73618 * 8 7 6 10 10 N 1.39196 * 120.82985 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00385 * 0.02918 * 10 9 8 12 12 C 1.52996 * 109.47195 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46989 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47355 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99553 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00110 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00069 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99925 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46968 * 60.00365 * 18 16 14 20 20 H 1.48507 * 109.46828 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46873 * 299.99978 * 18 16 14 22 22 C 1.39036 * 119.69008 * 174.24730 * 5 3 2 23 23 C 1.50701 * 120.52417 * 359.95300 * 22 5 3 24 24 H 1.08999 * 109.47700 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47510 * 300.00209 * 1 2 3 26 26 H 1.09005 * 109.46649 * 59.99838 * 1 2 3 27 27 H 1.08002 * 119.50474 * 180.24620 * 7 6 5 28 28 H 1.07998 * 120.37180 * 179.76783 * 8 7 6 29 29 H 0.97001 * 119.99646 * 180.02562 * 10 9 8 30 30 H 1.09003 * 109.46500 * 300.00036 * 11 10 9 31 31 H 1.09001 * 109.47091 * 59.99353 * 11 10 9 32 32 H 1.08994 * 109.47119 * 299.99903 * 12 11 10 33 33 H 1.09001 * 109.47430 * 59.99805 * 12 11 10 34 34 H 1.09003 * 109.47057 * 299.99853 * 13 12 11 35 35 H 1.09001 * 109.47002 * 59.99777 * 13 12 11 36 36 H 0.97000 * 120.00047 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46569 * 83.34662 * 23 22 5 38 38 H 1.08993 * 109.47044 * 203.34552 * 23 22 5 39 39 H 1.09005 * 109.47035 * 323.34846 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4022 2.2183 0.0005 5 6 3.5423 1.2773 0.0006 6 7 4.2596 0.1653 0.1223 7 6 5.5755 0.1849 0.1231 8 6 6.2701 1.3751 0.0071 9 6 5.5611 2.5685 -0.1178 10 7 6.2272 3.7850 -0.2360 11 6 7.6917 3.8218 -0.2309 12 6 8.1660 5.2694 -0.3743 13 6 9.6955 5.3078 -0.3683 14 6 10.1627 6.7337 -0.5088 15 1 9.4408 7.5326 -0.5934 16 6 11.5116 7.0184 -0.5282 17 7 12.3906 6.0456 -0.4247 18 14 12.0907 8.7858 -0.7032 19 1 11.5703 9.5916 0.4304 20 1 13.5753 8.8231 -0.6972 21 1 11.5869 9.3474 -1.9823 22 6 4.1673 2.5134 -0.1205 23 6 3.3517 3.7737 -0.2532 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 6.1212 -0.7420 0.2203 28 1 7.3501 1.3798 0.0126 29 1 5.7216 4.6084 -0.3219 30 1 8.0622 3.4089 0.7073 31 1 8.0729 3.2308 -1.0637 32 1 7.7954 5.6819 -1.3126 33 1 7.7847 5.8608 0.4582 34 1 10.0656 4.8955 0.5704 35 1 10.0770 4.7164 -1.2006 36 1 13.3395 6.2459 -0.4380 37 1 3.0485 4.1160 0.7362 38 1 3.9510 4.5450 -0.7367 39 1 2.4657 3.5714 -0.8551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:22 Heat of formation + Delta-G solvation = -77.904199 kcal Electronic energy + Delta-G solvation = -20585.625841 eV Core-core repulsion = 17299.203409 eV Total energy + Delta-G solvation = -3286.422432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.02556 -40.74594 -37.98634 -37.66315 -35.78098 -34.23263 -33.34547 -31.44185 -29.22728 -28.39354 -27.92955 -25.72493 -24.32630 -23.19824 -22.15492 -21.83504 -19.49738 -18.59749 -18.23633 -17.60566 -17.39449 -17.08528 -16.50985 -16.39970 -16.00461 -15.43368 -15.34289 -14.99452 -14.40988 -14.30898 -14.26124 -13.78825 -13.72562 -13.68909 -13.45901 -13.04099 -12.83011 -12.80988 -12.49596 -12.32683 -12.03387 -11.79477 -11.48714 -11.44091 -11.38063 -11.21383 -10.54662 -10.53521 -10.12891 -8.80437 -8.20559 -6.30868 -0.48589 0.39775 1.36923 1.41233 1.42949 1.50829 1.54890 2.29486 2.42754 2.81919 3.13498 3.24834 3.71986 3.77265 3.88011 4.12955 4.22459 4.22728 4.30447 4.35518 4.48987 4.54180 4.60068 4.70782 4.72614 4.86459 4.95514 4.96142 5.03878 5.06206 5.16186 5.32047 5.50074 5.57857 5.72205 5.84322 6.05737 6.24756 6.50194 6.59298 6.85954 6.97082 7.38421 8.90765 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044357 B = 0.002695 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.084967 B =10386.632918 C =10979.650485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.347 6.347 3 C 0.523 3.477 4 O -0.509 6.509 5 C 0.099 3.901 6 N -0.500 5.500 7 C 0.133 3.867 8 C -0.223 4.223 9 C 0.239 3.761 10 N -0.722 5.722 11 C 0.130 3.870 12 C -0.106 4.106 13 C 0.027 3.973 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.961 3.039 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.268 1.268 22 C -0.151 4.151 23 C -0.104 4.104 24 H 0.132 0.868 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.194 0.806 28 H 0.154 0.846 29 H 0.408 0.592 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.059 0.941 34 H -0.002 1.002 35 H -0.002 1.002 36 H 0.264 0.736 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.962 -11.394 0.710 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.262 6.262 3 C 0.367 3.633 4 O -0.398 6.398 5 C -0.036 4.036 6 N -0.215 5.215 7 C -0.026 4.026 8 C -0.249 4.249 9 C 0.124 3.876 10 N -0.350 5.350 11 C 0.007 3.993 12 C -0.144 4.144 13 C -0.011 4.011 14 C -0.582 4.582 15 H 0.078 0.922 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.786 3.214 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.193 1.193 22 C -0.159 4.159 23 C -0.161 4.161 24 H 0.150 0.850 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.211 0.789 28 H 0.171 0.829 29 H 0.246 0.754 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.282 -11.916 0.796 23.537 hybrid contribution 0.846 1.950 -0.163 2.131 sum -19.436 -9.967 0.634 21.852 Atomic orbital electron populations 1.23649 0.74231 1.05943 1.02855 1.86669 1.25114 1.31316 1.83062 1.20932 0.88090 0.81774 0.72468 1.90779 1.66553 1.36025 1.46416 1.19598 0.90678 0.89735 1.03573 1.67671 1.09186 1.29137 1.15479 1.22994 0.88480 0.98644 0.92488 1.22171 1.02531 0.91773 1.08410 1.17936 0.90238 0.87853 0.91562 1.44882 1.06289 1.05675 1.78197 1.21446 0.78287 0.98111 1.01464 1.21582 0.96985 0.94418 1.01427 1.18913 0.91078 0.95607 0.95483 1.21653 0.92146 0.94378 1.50048 0.92179 1.25928 0.97281 1.01621 0.94912 1.70069 1.01861 1.33804 1.51348 0.85560 0.76982 0.79754 0.79114 1.19291 1.21013 1.19293 1.20399 0.92650 0.96561 1.06296 1.20830 0.99425 0.92593 1.03250 0.85002 0.91543 0.91480 0.78922 0.82851 0.75377 0.91731 0.91715 0.92187 0.92216 0.98373 0.98353 0.92768 0.90615 0.91227 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -8.05 10.39 -55.83 -0.58 -8.63 16 3 C 0.52 13.74 7.89 70.44 0.56 14.30 16 4 O -0.51 -13.92 13.09 20.09 0.26 -13.66 16 5 C 0.10 2.67 6.74 41.79 0.28 2.95 16 6 N -0.50 -13.13 10.12 -185.24 -1.88 -15.00 16 7 C 0.13 2.86 11.17 84.74 0.95 3.81 16 8 C -0.22 -5.08 9.39 22.56 0.21 -4.86 16 9 C 0.24 6.00 6.67 38.55 0.26 6.26 16 10 N -0.72 -18.01 5.64 -338.93 -1.91 -19.92 16 11 C 0.13 3.75 4.95 86.38 0.43 4.17 16 12 C -0.11 -3.80 5.27 30.59 0.16 -3.64 16 13 C 0.03 1.30 4.97 29.85 0.15 1.45 16 14 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 15 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 16 C 0.00 0.04 5.46 84.65 0.46 0.50 16 17 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 18 Si 0.96 42.95 29.54 68.60 2.03 44.97 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 C -0.15 -3.86 5.95 -19.37 -0.12 -3.98 16 23 C -0.10 -2.36 8.47 71.24 0.60 -1.75 16 24 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 28 H 0.15 3.10 6.88 -2.91 -0.02 3.08 16 29 H 0.41 9.30 6.49 -92.71 -0.60 8.70 16 30 H 0.06 1.85 7.99 -2.39 -0.02 1.83 16 31 H 0.06 1.85 7.99 -2.39 -0.02 1.83 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.36 6.35 -2.39 -0.02 1.35 16 39 H 0.09 2.09 5.85 -2.38 -0.01 2.08 16 Total: -1.00 -65.80 330.76 4.04 -61.76 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.46 Total: 13.47 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 5.37 Total: -8.48 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -3.50 Total: -89.44 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.32 Total: -22.29 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -65.80 4.04 -61.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.140 kcal (2) G-P(sol) polarization free energy of solvation -65.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds