Wall clock time and date at job start Tue Mar 31 2020 00:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34759 * 117.00292 * 2 1 4 4 O 1.21528 * 120.00373 * 0.02562 * 3 2 1 5 5 C 1.47287 * 120.00422 * 180.02562 * 3 2 1 6 6 C 1.40047 * 120.61044 * 5.69550 * 5 3 2 7 7 C 1.38309 * 118.36006 * 179.97438 * 6 5 3 8 8 C 1.50698 * 120.23892 * 180.02562 * 7 6 5 9 9 C 1.38395 * 119.52024 * 359.97438 * 7 6 5 10 10 N 1.31843 * 121.22734 * 359.72569 * 9 7 6 11 11 C 1.32436 * 121.78353 * 0.56883 * 10 9 7 12 12 N 1.38226 * 119.83392 * 179.71353 * 11 10 9 13 13 C 1.46500 * 119.99987 * 354.27550 * 12 11 10 14 14 C 1.53000 * 109.47317 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47162 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46920 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00436 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99977 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00012 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00093 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47120 * 89.99966 * 20 18 16 22 22 H 1.48501 * 109.47510 * 210.00123 * 20 18 16 23 23 H 1.48506 * 109.47198 * 329.99956 * 20 18 16 24 24 H 1.09000 * 109.47351 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46981 * 300.00106 * 1 2 3 26 26 H 1.09007 * 109.47232 * 59.99761 * 1 2 3 27 27 H 1.08001 * 120.81929 * 359.95368 * 6 5 3 28 28 H 1.08998 * 109.47535 * 89.99679 * 8 7 6 29 29 H 1.08999 * 109.47167 * 209.99691 * 8 7 6 30 30 H 1.09000 * 109.47467 * 329.99811 * 8 7 6 31 31 H 1.07988 * 119.38692 * 180.02562 * 9 7 6 32 32 H 0.96998 * 120.00141 * 174.28349 * 12 11 10 33 33 H 1.09001 * 109.46958 * 60.00445 * 13 12 11 34 34 H 1.08999 * 109.47349 * 300.00761 * 13 12 11 35 35 H 1.08999 * 109.47015 * 300.00894 * 14 13 12 36 36 H 1.09001 * 109.46810 * 60.00273 * 14 13 12 37 37 H 1.09003 * 109.47188 * 300.00175 * 15 14 13 38 38 H 1.09001 * 109.47036 * 60.00410 * 15 14 13 39 39 H 0.97008 * 120.00200 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2200 0.0005 5 6 3.5346 1.2778 -0.0006 6 6 4.3095 0.1174 -0.1207 7 6 5.6868 0.2438 -0.1164 8 6 6.5614 -0.9768 -0.2438 9 6 6.2560 1.4995 0.0046 10 7 5.5095 2.5810 0.1108 11 6 4.1867 2.5176 0.1180 12 7 3.4433 3.6768 0.2373 13 6 4.1148 4.9558 0.4811 14 6 3.0710 6.0707 0.5718 15 6 3.7724 7.4066 0.8258 16 6 2.7442 8.5046 0.9157 17 1 1.6953 8.2729 0.8034 18 6 3.1424 9.8051 1.1413 19 7 2.2451 10.7634 1.2203 20 14 4.9566 10.2062 1.3349 21 1 5.5385 10.5211 0.0054 22 1 5.1113 11.3785 2.2332 23 1 5.6622 9.0378 1.9200 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 3.8431 -0.8522 -0.2141 28 1 6.7660 -1.1690 -1.2970 29 1 7.5001 -0.8079 0.2838 30 1 6.0506 -1.8366 0.1898 31 1 7.3316 1.5957 0.0074 32 1 2.4770 3.6434 0.1597 33 1 4.8023 5.1670 -0.3379 34 1 4.6705 4.9018 1.4172 35 1 2.5149 6.1248 -0.3641 36 1 2.3837 5.8593 1.3910 37 1 4.3287 7.3527 1.7616 38 1 4.4593 7.6178 0.0063 39 1 2.5253 11.6785 1.3787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:47 Heat of formation + Delta-G solvation = -57.796159 kcal Electronic energy + Delta-G solvation = -20882.280090 eV Core-core repulsion = 17596.729608 eV Total energy + Delta-G solvation = -3285.550482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07159 -39.73044 -37.06312 -36.15551 -33.99846 -32.99267 -32.29192 -30.99730 -28.02217 -27.52941 -25.83218 -24.82293 -23.20328 -21.68880 -21.18233 -20.14341 -17.91510 -17.60002 -17.16807 -16.81078 -16.57364 -16.22324 -15.14877 -14.76745 -14.34355 -14.29633 -14.18130 -13.81854 -13.49638 -13.16603 -13.09725 -12.86333 -12.64200 -12.45135 -12.08678 -12.07648 -11.86939 -11.06024 -11.03484 -10.92150 -10.66483 -10.18397 -9.99921 -9.96888 -9.72508 -9.66638 -9.51837 -9.18513 -8.52292 -7.66550 -6.02675 -4.01064 0.53479 1.33091 2.39713 2.48940 3.33150 3.36228 3.40454 3.44714 3.74358 4.32446 4.47183 4.57265 4.63309 4.82414 4.88906 4.97751 5.01051 5.05050 5.31169 5.32076 5.40936 5.52237 5.60391 5.65106 5.72734 5.73097 6.04163 6.07799 6.13325 6.32111 6.51737 6.59020 6.83529 7.22909 7.28764 7.37807 7.41164 7.62830 7.80007 8.23589 8.55196 9.02038 9.59376 11.10747 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.003737 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.438516 B = 7490.398090 C = 8879.413015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.524 3.476 4 O -0.515 6.515 5 C -0.269 4.269 6 C 0.030 3.970 7 C -0.234 4.234 8 C -0.095 4.095 9 C 0.199 3.801 10 N -0.542 5.542 11 C 0.459 3.541 12 N -0.690 5.690 13 C 0.117 3.883 14 C -0.115 4.115 15 C -0.009 4.009 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.143 0.857 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.160 0.840 32 H 0.424 0.576 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -27.574 -3.131 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.371 3.629 4 O -0.405 6.405 5 C -0.279 4.279 6 C 0.004 3.996 7 C -0.240 4.240 8 C -0.152 4.152 9 C 0.036 3.964 10 N -0.260 5.260 11 C 0.218 3.782 12 N -0.327 5.327 13 C -0.007 4.007 14 C -0.153 4.153 15 C -0.047 4.047 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 H 0.120 0.880 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.160 0.840 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.177 0.823 32 H 0.273 0.727 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.098 -26.014 -2.985 26.676 hybrid contribution -0.083 -0.344 -0.005 0.354 sum 5.015 -26.358 -2.990 26.997 Atomic orbital electron populations 1.23297 0.75846 1.03672 1.02947 1.86521 1.23654 1.32355 1.84601 1.20840 0.88466 0.81399 0.72150 1.90557 1.66425 1.35419 1.48125 1.19190 0.89684 0.94486 1.24490 1.21454 0.92779 0.97295 0.88024 1.20487 0.94289 0.97001 1.12173 1.20517 0.98425 0.94313 1.01966 1.22705 0.99728 0.86612 0.87386 1.67526 1.03690 1.32492 1.22246 1.18375 0.88138 0.85515 0.86179 1.45953 1.11227 1.04541 1.70990 1.21720 0.96286 0.81481 1.01173 1.21709 0.97309 0.94474 1.01801 1.19486 0.96598 0.92135 0.96434 1.21122 0.94560 0.90971 1.49257 0.91013 1.25034 0.97559 0.96314 0.94629 1.69920 1.33542 1.00704 1.50137 0.86760 0.85964 0.78097 0.78382 1.20249 1.21395 1.18889 0.88026 0.91632 0.91679 0.83969 0.91687 0.91585 0.91815 0.82275 0.72652 0.91518 0.91812 0.92151 0.92162 0.96327 0.96722 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.36 -3.90 9.90 -40.65 -0.40 -4.30 16 3 C 0.52 7.15 7.88 34.41 0.27 7.42 16 4 O -0.52 -8.24 13.47 -19.29 -0.26 -8.50 16 5 C -0.27 -3.60 5.91 -104.66 -0.62 -4.21 16 6 C 0.03 0.31 9.40 -38.88 -0.37 -0.06 16 7 C -0.23 -2.18 5.89 -104.54 -0.62 -2.79 16 8 C -0.09 -0.56 10.03 36.00 0.36 -0.20 16 9 C 0.20 2.15 10.84 -17.49 -0.19 1.96 16 10 N -0.54 -7.91 9.55 -12.19 -0.12 -8.02 16 11 C 0.46 7.10 7.48 -155.19 -1.16 5.93 16 12 N -0.69 -11.68 5.57 -60.22 -0.34 -12.01 16 13 C 0.12 2.09 5.69 -4.04 -0.02 2.07 16 14 C -0.11 -2.38 5.27 -26.73 -0.14 -2.52 16 15 C -0.01 -0.21 4.04 -27.89 -0.11 -0.32 16 16 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 20 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.14 1.12 7.71 -52.49 -0.40 0.72 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.42 7.36 4.98 -40.92 -0.20 7.16 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 38 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -33.55 331.91 -7.57 -41.12 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.61 Total: 1.98 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.96 Total: -5.06 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.32 Total: -47.67 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.66 Total: -12.80 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.55 -7.57 -41.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.672 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds