Wall clock time and date at job start Tue Mar 31 2020 00:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34704 * 117.00560 * 2 1 4 4 O 1.21477 * 119.99545 * 359.97438 * 3 2 1 5 5 C 1.47739 * 120.00645 * 179.97438 * 3 2 1 6 6 C 1.39628 * 120.52570 * 359.97438 * 5 3 2 7 7 N 1.31650 * 120.72543 * 180.02562 * 6 5 3 8 8 C 1.31888 * 121.96875 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.50370 * 180.02562 * 8 7 6 10 10 C 1.38989 * 120.98627 * 0.02562 * 8 7 6 11 11 N 1.39745 * 120.42271 * 179.97438 * 10 8 7 12 12 C 1.46499 * 120.00107 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46840 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46988 * 89.99354 * 19 17 15 21 21 H 1.48498 * 109.47211 * 210.00040 * 19 17 15 22 22 H 1.48506 * 109.46856 * 330.00220 * 19 17 15 23 23 C 1.39054 * 119.15617 * 0.24619 * 10 8 7 24 24 H 1.08994 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47241 * 300.00408 * 1 2 3 26 26 H 1.09004 * 109.46618 * 59.99820 * 1 2 3 27 27 H 1.08006 * 119.63653 * 0.02562 * 6 5 3 28 28 H 1.09004 * 109.47151 * 269.97809 * 9 8 7 29 29 H 1.08997 * 109.47553 * 29.98248 * 9 8 7 30 30 H 1.08999 * 109.46897 * 149.98187 * 9 8 7 31 31 H 0.97000 * 119.99472 * 359.97438 * 11 10 8 32 32 H 1.09002 * 109.47391 * 59.99564 * 12 11 10 33 33 H 1.09001 * 109.46813 * 299.99621 * 12 11 10 34 34 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 35 35 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 36 36 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 37 37 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 38 38 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.88700 * 179.72517 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.3102 0.1135 0.0017 7 7 5.6251 0.1779 0.0027 8 6 6.2679 1.3295 0.0022 9 6 7.7748 1.3383 0.0029 10 6 5.5762 2.5350 0.0012 11 7 6.2692 3.7485 0.0012 12 6 5.5308 5.0138 0.0007 13 6 6.5197 6.1813 0.0015 14 6 5.7485 7.5028 0.0016 15 6 6.7224 8.6528 0.0031 16 1 7.7852 8.4604 0.0043 17 6 6.2568 9.9505 0.0029 18 7 4.9626 10.1848 0.0009 19 14 7.4640 11.3761 0.0040 20 1 7.7851 11.7538 -1.3959 21 1 6.8581 12.5373 0.7036 22 1 8.7087 10.9700 0.7049 23 6 4.1858 2.5183 0.0058 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 3.8226 -0.8502 0.0017 28 1 8.1377 1.3415 1.0307 29 1 8.1437 0.4501 -0.5100 30 1 8.1331 2.2300 -0.5117 31 1 7.2392 3.7530 0.0024 32 1 4.9034 5.0688 0.8903 33 1 4.9044 5.0684 -0.8896 34 1 7.1458 6.1265 0.8921 35 1 7.1473 6.1265 -0.8878 36 1 5.1221 7.5579 -0.8887 37 1 5.1211 7.5573 0.8913 38 1 4.6351 11.0978 0.0003 39 1 3.6203 3.4384 0.0096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168435335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:05 Heat of formation + Delta-G solvation = -65.474947 kcal Electronic energy + Delta-G solvation = -20557.588107 eV Core-core repulsion = 17271.704647 eV Total energy + Delta-G solvation = -3285.883459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.95154 -39.91370 -36.67289 -36.62351 -33.93269 -33.28421 -31.97212 -29.96055 -28.91350 -27.26909 -26.43927 -23.79201 -23.53208 -21.89382 -21.23312 -20.29619 -18.24588 -17.64677 -16.70734 -16.55133 -16.28172 -16.01009 -15.44042 -15.16639 -14.53672 -14.41490 -14.22016 -13.80750 -13.51096 -13.24342 -12.59939 -12.49843 -12.37764 -12.32877 -12.20149 -12.19072 -11.82258 -11.02047 -11.01814 -10.92306 -10.78564 -10.62127 -10.55435 -9.85974 -9.71163 -9.60176 -9.46975 -9.18335 -8.41960 -7.52489 -6.06564 -4.09898 0.43001 1.35003 2.40833 2.42832 3.27836 3.34295 3.36474 3.42686 3.73166 4.19108 4.40534 4.58103 4.59646 4.85961 4.88650 4.96017 5.01412 5.14390 5.29060 5.29433 5.40970 5.45893 5.54197 5.61056 5.75794 5.87743 5.98032 6.05452 6.12896 6.31113 6.48030 6.56774 6.89024 7.16336 7.53813 7.56695 7.66389 7.68429 7.88410 7.91445 8.32504 8.96535 9.54725 11.04691 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.003246 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.027883 B = 8623.982841 C = 9988.656262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.514 3.486 4 O -0.499 6.499 5 C -0.136 4.136 6 C 0.090 3.910 7 N -0.453 5.453 8 C 0.081 3.919 9 C -0.101 4.101 10 C 0.170 3.830 11 N -0.730 5.730 12 C 0.114 3.886 13 C -0.119 4.119 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.096 4.096 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.165 0.835 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.403 0.597 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 -21.950 0.023 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.358 3.642 4 O -0.387 6.387 5 C -0.140 4.140 6 C -0.071 4.071 7 N -0.161 5.161 8 C -0.062 4.062 9 C -0.158 4.158 10 C 0.061 3.939 11 N -0.358 5.358 12 C -0.009 4.009 13 C -0.157 4.157 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.126 4.126 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.182 0.818 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.240 0.760 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.511 -22.064 0.026 22.207 hybrid contribution 0.056 1.792 -0.008 1.793 sum -2.455 -20.272 0.018 20.420 Atomic orbital electron populations 1.23297 0.75830 1.03767 1.02814 1.86527 1.23648 1.32491 1.84431 1.21040 0.88819 0.81522 0.72861 1.90874 1.66656 1.35979 1.45170 1.19802 0.89863 0.95419 1.08908 1.22711 0.88731 0.97479 0.98131 1.67383 1.09878 1.27521 1.11343 1.21058 0.97023 0.86837 1.01299 1.20629 0.88674 1.03417 1.03122 1.18547 0.91535 0.87858 0.95974 1.45117 1.08628 1.02396 1.79685 1.21765 0.95945 0.82067 1.01127 1.21849 0.97842 0.94986 1.01041 1.19030 0.95450 0.89243 0.97620 1.21186 0.92983 0.90919 1.51108 0.92642 1.25029 0.95143 0.99063 0.95196 1.69963 1.12363 1.20467 1.50441 0.86576 0.81194 0.81988 0.78135 1.20622 1.21165 1.19875 1.21203 0.92455 0.98033 1.00914 0.87898 0.91720 0.91727 0.81801 0.90285 0.90064 0.90993 0.75980 0.92120 0.92132 0.92610 0.92625 0.96291 0.96283 0.92878 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.79 9.84 -40.50 -0.40 -4.19 16 3 C 0.51 6.83 7.91 34.61 0.27 7.11 16 4 O -0.50 -7.99 16.21 -19.25 -0.31 -8.31 16 5 C -0.14 -1.79 5.89 -104.86 -0.62 -2.41 16 6 C 0.09 1.08 10.78 -17.11 -0.18 0.89 16 7 N -0.45 -5.80 10.25 -8.98 -0.09 -5.89 16 8 C 0.08 1.01 6.80 -82.29 -0.56 0.45 16 9 C -0.10 -0.94 9.73 36.00 0.35 -0.58 16 10 C 0.17 2.27 6.64 -83.67 -0.56 1.72 16 11 N -0.73 -9.70 5.63 -58.55 -0.33 -10.03 16 12 C 0.11 1.82 4.94 -4.04 -0.02 1.80 16 13 C -0.12 -2.23 5.27 -26.73 -0.14 -2.38 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 16 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.10 -1.36 8.96 -38.65 -0.35 -1.70 16 24 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.16 1.57 7.62 -52.48 -0.40 1.17 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.59 6.53 -51.93 -0.34 0.25 16 31 H 0.40 4.65 6.47 -40.82 -0.26 4.39 16 32 H 0.06 0.99 7.98 -51.93 -0.41 0.58 16 33 H 0.06 0.99 7.99 -51.93 -0.42 0.57 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 39 H 0.15 2.23 6.55 -52.49 -0.34 1.89 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -31.83 335.54 -7.16 -38.99 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.52 Total: 0.39 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.28 Total: -6.52 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.31 Total: -41.71 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.71 Total: -12.49 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.83 -7.16 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.486 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds