Wall clock time and date at job start Tue Mar 31 2020 00:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34704 * 117.00560 * 2 1 4 4 O 1.21477 * 119.99545 * 359.97438 * 3 2 1 5 5 C 1.47739 * 120.00645 * 179.97438 * 3 2 1 6 6 C 1.39628 * 120.52570 * 359.97438 * 5 3 2 7 7 N 1.31650 * 120.72543 * 180.02562 * 6 5 3 8 8 C 1.31888 * 121.96875 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.50370 * 180.02562 * 8 7 6 10 10 C 1.38989 * 120.98627 * 0.02562 * 8 7 6 11 11 N 1.39745 * 120.42271 * 179.97438 * 10 8 7 12 12 C 1.46499 * 120.00107 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46840 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46988 * 89.99354 * 19 17 15 21 21 H 1.48498 * 109.47211 * 210.00040 * 19 17 15 22 22 H 1.48506 * 109.46856 * 330.00220 * 19 17 15 23 23 C 1.39054 * 119.15617 * 0.24619 * 10 8 7 24 24 H 1.08994 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47241 * 300.00408 * 1 2 3 26 26 H 1.09004 * 109.46618 * 59.99820 * 1 2 3 27 27 H 1.08006 * 119.63653 * 0.02562 * 6 5 3 28 28 H 1.09004 * 109.47151 * 269.97809 * 9 8 7 29 29 H 1.08997 * 109.47553 * 29.98248 * 9 8 7 30 30 H 1.08999 * 109.46897 * 149.98187 * 9 8 7 31 31 H 0.97000 * 119.99472 * 359.97438 * 11 10 8 32 32 H 1.09002 * 109.47391 * 59.99564 * 12 11 10 33 33 H 1.09001 * 109.46813 * 299.99621 * 12 11 10 34 34 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 35 35 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 36 36 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 37 37 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 38 38 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.88700 * 179.72517 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.3102 0.1135 0.0017 7 7 5.6251 0.1779 0.0027 8 6 6.2679 1.3295 0.0022 9 6 7.7748 1.3383 0.0029 10 6 5.5762 2.5350 0.0012 11 7 6.2692 3.7485 0.0012 12 6 5.5308 5.0138 0.0007 13 6 6.5197 6.1813 0.0015 14 6 5.7485 7.5028 0.0016 15 6 6.7224 8.6528 0.0031 16 1 7.7852 8.4604 0.0043 17 6 6.2568 9.9505 0.0029 18 7 4.9626 10.1848 0.0009 19 14 7.4640 11.3761 0.0040 20 1 7.7851 11.7538 -1.3959 21 1 6.8581 12.5373 0.7036 22 1 8.7087 10.9700 0.7049 23 6 4.1858 2.5183 0.0058 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 3.8226 -0.8502 0.0017 28 1 8.1377 1.3415 1.0307 29 1 8.1437 0.4501 -0.5100 30 1 8.1331 2.2300 -0.5117 31 1 7.2392 3.7530 0.0024 32 1 4.9034 5.0688 0.8903 33 1 4.9044 5.0684 -0.8896 34 1 7.1458 6.1265 0.8921 35 1 7.1473 6.1265 -0.8878 36 1 5.1221 7.5579 -0.8887 37 1 5.1211 7.5573 0.8913 38 1 4.6351 11.0978 0.0003 39 1 3.6203 3.4384 0.0096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168435335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:04 Heat of formation + Delta-G solvation = -85.115521 kcal Electronic energy + Delta-G solvation = -20558.439786 eV Core-core repulsion = 17271.704647 eV Total energy + Delta-G solvation = -3286.735139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95274 -40.90296 -37.90371 -37.60254 -35.68478 -34.31775 -33.65128 -31.24504 -29.80937 -28.38430 -27.75520 -25.37309 -24.46570 -23.24999 -22.42903 -21.67230 -19.26811 -18.77805 -18.40117 -17.57728 -17.47761 -16.96636 -16.66487 -16.45456 -16.31279 -15.54220 -15.42294 -14.68068 -14.46826 -14.38425 -14.11540 -13.92781 -13.71093 -13.29622 -13.24931 -13.08160 -13.02210 -12.82483 -12.53032 -12.35479 -11.99975 -11.96552 -11.85973 -11.51017 -11.39601 -11.22423 -10.62606 -10.61429 -10.56904 -8.58235 -8.21416 -6.32684 -0.58544 0.31741 1.38682 1.40500 1.41476 1.52446 1.54420 2.28324 2.42213 2.73640 3.12611 3.30080 3.60987 3.68203 3.86436 3.96002 4.10693 4.18549 4.27674 4.33569 4.34108 4.52907 4.64433 4.69885 4.77916 4.84726 4.91987 4.94210 5.00626 5.14373 5.15123 5.19823 5.44416 5.50100 5.69150 5.82522 5.99409 6.22058 6.55476 6.67769 6.84846 6.89350 7.37076 8.90537 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.003246 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.027883 B = 8623.982841 C = 9988.656262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.518 3.482 4 O -0.536 6.536 5 C -0.148 4.148 6 C 0.103 3.897 7 N -0.463 5.463 8 C 0.090 3.910 9 C -0.102 4.102 10 C 0.158 3.842 11 N -0.723 5.723 12 C 0.130 3.870 13 C -0.102 4.102 14 C 0.024 3.976 15 C -0.542 4.542 16 H 0.065 0.935 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.261 1.261 23 C -0.112 4.112 24 H 0.141 0.859 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.190 0.810 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.414 0.586 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.065 0.935 36 H -0.007 1.007 37 H -0.007 1.007 38 H 0.263 0.737 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 -23.570 0.037 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.363 3.637 4 O -0.427 6.427 5 C -0.152 4.152 6 C -0.057 4.057 7 N -0.171 5.171 8 C -0.053 4.053 9 C -0.159 4.159 10 C 0.051 3.949 11 N -0.354 5.354 12 C 0.006 3.994 13 C -0.140 4.140 14 C -0.013 4.013 15 C -0.580 4.580 16 H 0.083 0.917 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.185 1.185 23 C -0.143 4.143 24 H 0.159 0.841 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.207 0.793 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.253 0.747 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.731 -23.742 0.040 23.754 hybrid contribution -0.564 2.173 -0.012 2.245 sum -1.295 -21.570 0.028 21.608 Atomic orbital electron populations 1.23645 0.73988 1.06210 1.02621 1.86518 1.25394 1.30834 1.83677 1.21114 0.88902 0.81736 0.71946 1.90856 1.67383 1.37289 1.47154 1.19863 0.90051 0.95522 1.09750 1.23107 0.88560 0.97970 0.96058 1.67527 1.10107 1.27507 1.11999 1.21555 0.98569 0.86104 0.99104 1.20762 0.86272 1.04520 1.04324 1.18594 0.91227 0.88200 0.96905 1.44769 1.08890 1.01361 1.80425 1.21341 0.95098 0.82536 1.00422 1.21551 0.97655 0.92854 1.01911 1.18935 0.95094 0.92194 0.95107 1.21683 0.93865 0.91959 1.50470 0.91700 1.26004 0.96954 1.02279 0.94787 1.70107 1.14525 1.21153 1.51675 0.85441 0.78992 0.78114 0.78464 1.19826 1.21022 1.18479 1.21208 0.93099 0.98019 1.01958 0.84092 0.91969 0.91981 0.79276 0.88869 0.89040 0.89817 0.74697 0.93012 0.93025 0.91653 0.91642 0.98873 0.98862 0.92812 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.35 -7.05 9.84 -56.14 -0.55 -7.60 16 3 C 0.52 13.81 7.91 70.33 0.56 14.37 16 4 O -0.54 -17.81 16.21 19.91 0.32 -17.49 16 5 C -0.15 -3.86 5.89 -20.02 -0.12 -3.98 16 6 C 0.10 2.28 10.78 85.06 0.92 3.20 16 7 N -0.46 -10.86 10.25 -182.31 -1.87 -12.73 16 8 C 0.09 2.05 6.80 42.73 0.29 2.34 16 9 C -0.10 -1.59 9.73 71.23 0.69 -0.89 16 10 C 0.16 4.12 6.64 38.26 0.25 4.38 16 11 N -0.72 -18.55 5.63 -339.16 -1.91 -20.46 16 12 C 0.13 4.20 4.94 86.38 0.43 4.63 16 13 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 14 C 0.02 1.24 4.97 29.85 0.15 1.39 16 15 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 17 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 18 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 19 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 C -0.11 -3.24 8.96 22.87 0.20 -3.03 16 24 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.19 3.12 7.62 -2.91 -0.02 3.09 16 28 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.12 6.53 -2.39 -0.02 1.11 16 31 H 0.41 8.71 6.47 -92.71 -0.60 8.11 16 32 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 33 H 0.05 1.75 7.99 -2.39 -0.02 1.73 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.13 4.21 6.55 -2.91 -0.02 4.19 16 Total: -1.00 -69.49 335.54 4.19 -65.30 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.46 Total: 12.88 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.43 Total: -9.08 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -3.49 Total: -89.67 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.23 Total: -25.09 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -69.49 4.19 -65.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.813 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds