Wall clock time and date at job start Tue Mar 31 2020 00:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 112.68398 * 2 1 4 4 C 1.53368 * 113.38817 * 229.43183 * 2 1 3 5 5 C 1.53363 * 81.26109 * 218.61467 * 4 2 1 6 6 H 1.09001 * 113.43738 * 271.58621 * 5 4 2 7 7 C 1.53002 * 113.39369 * 141.38408 * 5 4 2 8 8 N 1.46502 * 109.47085 * 181.58348 * 7 5 4 9 9 C 1.39119 * 119.99799 * 179.97438 * 8 7 5 10 10 C 1.39164 * 119.63116 * 359.97438 * 9 8 7 11 11 C 1.38213 * 119.16848 * 179.70147 * 10 9 8 12 12 C 1.39449 * 118.45029 * 0.27599 * 11 10 9 13 13 O 1.35813 * 120.40611 * 179.97438 * 12 11 10 14 14 C 1.34815 * 117.00156 * 354.53131 * 13 12 11 15 15 H 1.08005 * 119.99648 * 5.04746 * 14 13 12 16 16 C 1.38622 * 120.00466 * 185.05224 * 14 13 12 17 17 N 1.31574 * 120.00225 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99720 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47452 * 90.00062 * 18 16 14 20 20 H 1.48503 * 109.47300 * 209.99913 * 18 16 14 21 21 H 1.48499 * 109.47319 * 329.99851 * 18 16 14 22 22 C 1.38668 * 119.19275 * 0.02562 * 12 11 10 23 23 N 1.31934 * 120.75809 * 359.97295 * 22 12 11 24 24 O 1.43345 * 113.39124 * 130.52151 * 2 1 3 25 25 H 1.09000 * 109.47198 * 308.98952 * 1 2 3 26 26 H 1.09008 * 109.47351 * 68.98742 * 1 2 3 27 27 H 1.08998 * 109.47561 * 188.99117 * 1 2 3 28 28 H 1.08999 * 109.47384 * 171.00966 * 3 2 1 29 29 H 1.09004 * 109.47190 * 291.01266 * 3 2 1 30 30 H 1.09002 * 109.46815 * 51.01166 * 3 2 1 31 31 H 1.09003 * 114.56875 * 105.52192 * 4 2 1 32 32 H 1.08995 * 114.56951 * 331.71208 * 4 2 1 33 33 H 1.08990 * 109.47024 * 61.58115 * 7 5 4 34 34 H 1.09001 * 109.46765 * 301.58226 * 7 5 4 35 35 H 0.97002 * 119.99782 * 0.02562 * 8 7 5 36 36 H 1.07997 * 120.41643 * 359.97438 * 10 9 8 37 37 H 1.07998 * 120.77536 * 180.30453 * 11 10 9 38 38 H 0.97001 * 120.00064 * 180.02562 * 17 16 14 39 39 H 1.08003 * 119.62295 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1200 1.4116 0.0000 4 6 2.1388 -0.9155 -1.0693 5 6 3.1334 -1.1892 0.0655 6 1 3.9733 -0.4947 0.0828 7 6 3.5754 -2.6518 0.1463 8 7 4.4905 -2.8236 1.2774 9 6 5.0276 -4.0769 1.5533 10 6 4.6901 -5.1622 0.7502 11 6 5.2341 -6.4017 1.0292 12 6 6.1011 -6.5174 2.1153 13 8 6.6579 -7.7167 2.4256 14 6 6.2458 -8.7852 1.7143 15 1 5.5667 -8.6526 0.8851 16 6 6.6936 -10.0541 2.0473 17 7 6.2910 -11.0970 1.3534 18 14 7.8687 -10.2834 3.4812 19 1 7.0919 -10.5008 4.7280 20 1 8.7362 -11.4616 3.2268 21 1 8.7123 -9.0703 3.6288 22 6 6.3870 -5.3933 2.8753 23 7 5.8496 -4.2250 2.5805 24 8 2.0990 -0.8548 1.0001 25 1 -0.3633 0.6466 0.7988 26 1 -0.3634 0.3685 -0.9594 27 1 -0.3634 -1.0150 0.1606 28 1 3.1966 1.3555 0.1606 29 1 1.9201 1.8890 -0.9594 30 1 1.6635 1.9962 0.7988 31 1 2.5622 -0.3919 -1.9265 32 1 1.5175 -1.7682 -1.3430 33 1 4.0831 -2.9294 -0.7773 34 1 2.7015 -3.2882 0.2860 35 1 4.7212 -2.0637 1.8343 36 1 4.0149 -5.0365 -0.0833 37 1 4.9938 -7.2605 0.4200 38 1 6.6041 -11.9850 1.5867 39 1 7.0572 -5.4751 3.7183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168452343.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:48 Heat of formation + Delta-G solvation = 3.785561 kcal Electronic energy + Delta-G solvation = -20752.268912 eV Core-core repulsion = 17469.388814 eV Total energy + Delta-G solvation = -3282.880098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52968 -39.65717 -37.49153 -35.14403 -32.59666 -32.32469 -31.33320 -30.54528 -28.36996 -27.94277 -26.09380 -24.83120 -23.15892 -21.60645 -21.08757 -19.75608 -18.15999 -17.42459 -16.85869 -16.53941 -16.35100 -15.82919 -15.09115 -14.52537 -14.41773 -14.18827 -13.97993 -13.60800 -13.46000 -13.28722 -12.80050 -12.65175 -12.46230 -12.34930 -12.27400 -12.20837 -12.12597 -11.87034 -11.55070 -11.10533 -10.89831 -10.71105 -10.26299 -9.99224 -9.61674 -9.38246 -9.01901 -8.82661 -8.62441 -6.76161 -6.38358 -4.03080 1.96373 2.32917 3.24934 3.28860 3.32539 3.43826 3.56672 3.89750 4.27074 4.38923 4.51946 4.60538 4.64215 4.78268 4.92098 4.99783 5.04754 5.13267 5.17277 5.24944 5.31399 5.35832 5.46787 5.50024 5.61523 5.65589 5.70692 5.84466 5.86233 5.88812 6.00083 6.08055 6.43661 6.70076 7.02454 7.06644 7.57096 7.71105 7.99329 8.10055 8.82751 8.97324 9.59292 10.69744 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046316 B = 0.002882 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.391196 B = 9713.564514 C =10066.887275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.157 4.157 4 C -0.171 4.171 5 C 0.049 3.951 6 H 0.095 0.905 7 C 0.139 3.861 8 N -0.737 5.737 9 C 0.319 3.681 10 C -0.187 4.187 11 C -0.140 4.140 12 C 0.068 3.932 13 O -0.218 6.218 14 C -0.387 4.387 15 H 0.102 0.898 16 C 0.062 3.938 17 N -0.883 5.883 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.259 1.259 22 C 0.070 3.930 23 N -0.504 5.504 24 O -0.351 6.351 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.118 0.882 37 H 0.142 0.858 38 H 0.279 0.721 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 21.536 -5.739 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.035 3.965 3 C -0.214 4.214 4 C -0.209 4.209 5 C -0.009 4.009 6 H 0.113 0.887 7 C 0.013 3.987 8 N -0.376 5.376 9 C 0.087 3.913 10 C -0.211 4.211 11 C -0.167 4.167 12 C 0.013 3.987 13 O -0.123 6.123 14 C -0.464 4.464 15 H 0.120 0.880 16 C -0.141 4.141 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.088 4.088 23 N -0.220 5.220 24 O -0.270 6.270 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.089 0.911 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.410 21.793 -4.965 23.881 hybrid contribution 0.252 -0.763 -0.012 0.804 sum -8.158 21.030 -4.977 23.100 Atomic orbital electron populations 1.21841 0.92670 1.03227 1.02473 1.22473 0.95218 0.91538 0.87246 1.22033 1.01602 0.94862 1.02894 1.24499 0.97968 1.00514 0.97897 1.23438 0.92438 0.96672 0.88382 0.88690 1.21363 0.93210 0.94068 0.90019 1.43863 1.52197 1.07499 1.34046 1.17956 0.94684 0.85964 0.92744 1.21129 1.05155 0.92426 1.02413 1.21520 0.98855 0.97771 0.98580 1.19971 0.95410 0.88008 0.95262 1.83581 1.58505 1.12933 1.57255 1.20689 1.29401 0.83159 1.13110 0.88018 1.24434 0.97656 0.93637 0.98354 1.69655 1.43771 0.98938 1.39834 0.86169 0.80805 0.78293 0.81569 1.19930 1.20897 1.18270 1.21451 1.01722 0.85506 1.00147 1.66942 1.11903 1.25625 1.17567 1.90053 1.40660 1.61417 1.34906 0.91940 0.91041 0.91403 0.91670 0.91006 0.91459 0.89852 0.87872 0.91170 0.91701 0.76746 0.86378 0.84026 0.91136 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.43 37.15 0.35 -0.66 16 2 C 0.07 0.60 1.69 -103.18 -0.17 0.43 16 3 C -0.16 -1.00 9.27 37.16 0.34 -0.66 16 4 C -0.17 -1.21 7.31 -26.35 -0.19 -1.40 16 5 C 0.05 0.46 3.77 -39.29 -0.15 0.31 16 6 H 0.10 0.80 7.11 -51.93 -0.37 0.43 16 7 C 0.14 1.59 4.93 -4.04 -0.02 1.57 16 8 N -0.74 -10.87 5.73 -60.38 -0.35 -11.22 16 9 C 0.32 5.91 7.65 -154.90 -1.19 4.73 16 10 C -0.19 -3.48 9.32 -39.25 -0.37 -3.84 16 11 C -0.14 -3.03 9.25 -39.14 -0.36 -3.39 16 12 C 0.07 1.58 6.66 -38.97 -0.26 1.32 16 13 O -0.22 -5.74 8.59 -0.10 0.00 -5.74 16 14 C -0.39 -10.90 9.96 30.87 0.31 -10.59 16 15 H 0.10 2.90 5.49 -52.48 -0.29 2.62 16 16 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 17 N -0.88 -25.59 13.96 55.48 0.77 -24.81 16 18 Si 0.91 21.75 28.62 -169.99 -4.86 16.89 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.07 1.48 11.14 -17.35 -0.19 1.29 16 23 N -0.50 -10.15 10.39 -12.25 -0.13 -10.28 16 24 O -0.35 -4.07 12.21 -35.23 -0.43 -4.50 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.43 6.88 -51.93 -0.36 0.07 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.10 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 34 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 35 H 0.40 5.63 8.60 -40.82 -0.35 5.28 16 36 H 0.12 1.85 6.70 -52.49 -0.35 1.50 16 37 H 0.14 3.12 5.76 -52.49 -0.30 2.82 16 38 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.15 2.87 8.06 -52.48 -0.42 2.45 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -31.34 326.37 -7.43 -38.76 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.36 Total: 5.23 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.99 Total: -9.26 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.30 Total: -46.31 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.43 Total: -10.23 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.86 Total: 16.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.34 -7.43 -38.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168452343.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.550 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds