Wall clock time and date at job start Tue Mar 31 2020 00:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 112.68398 * 2 1 4 4 C 1.53368 * 113.38817 * 229.43183 * 2 1 3 5 5 C 1.53363 * 81.26109 * 218.61467 * 4 2 1 6 6 H 1.09001 * 113.43738 * 271.58621 * 5 4 2 7 7 C 1.53002 * 113.39369 * 141.38408 * 5 4 2 8 8 N 1.46502 * 109.47085 * 181.58348 * 7 5 4 9 9 C 1.39119 * 119.99799 * 179.97438 * 8 7 5 10 10 C 1.39164 * 119.63116 * 359.97438 * 9 8 7 11 11 C 1.38213 * 119.16848 * 179.70147 * 10 9 8 12 12 C 1.39449 * 118.45029 * 0.27599 * 11 10 9 13 13 O 1.35813 * 120.40611 * 179.97438 * 12 11 10 14 14 C 1.34815 * 117.00156 * 354.53131 * 13 12 11 15 15 H 1.08005 * 119.99648 * 5.04746 * 14 13 12 16 16 C 1.38622 * 120.00466 * 185.05224 * 14 13 12 17 17 N 1.31574 * 120.00225 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99720 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47452 * 90.00062 * 18 16 14 20 20 H 1.48503 * 109.47300 * 209.99913 * 18 16 14 21 21 H 1.48499 * 109.47319 * 329.99851 * 18 16 14 22 22 C 1.38668 * 119.19275 * 0.02562 * 12 11 10 23 23 N 1.31934 * 120.75809 * 359.97295 * 22 12 11 24 24 O 1.43345 * 113.39124 * 130.52151 * 2 1 3 25 25 H 1.09000 * 109.47198 * 308.98952 * 1 2 3 26 26 H 1.09008 * 109.47351 * 68.98742 * 1 2 3 27 27 H 1.08998 * 109.47561 * 188.99117 * 1 2 3 28 28 H 1.08999 * 109.47384 * 171.00966 * 3 2 1 29 29 H 1.09004 * 109.47190 * 291.01266 * 3 2 1 30 30 H 1.09002 * 109.46815 * 51.01166 * 3 2 1 31 31 H 1.09003 * 114.56875 * 105.52192 * 4 2 1 32 32 H 1.08995 * 114.56951 * 331.71208 * 4 2 1 33 33 H 1.08990 * 109.47024 * 61.58115 * 7 5 4 34 34 H 1.09001 * 109.46765 * 301.58226 * 7 5 4 35 35 H 0.97002 * 119.99782 * 0.02562 * 8 7 5 36 36 H 1.07997 * 120.41643 * 359.97438 * 10 9 8 37 37 H 1.07998 * 120.77536 * 180.30453 * 11 10 9 38 38 H 0.97001 * 120.00064 * 180.02562 * 17 16 14 39 39 H 1.08003 * 119.62295 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1200 1.4116 0.0000 4 6 2.1388 -0.9155 -1.0693 5 6 3.1334 -1.1892 0.0655 6 1 3.9733 -0.4947 0.0828 7 6 3.5754 -2.6518 0.1463 8 7 4.4905 -2.8236 1.2774 9 6 5.0276 -4.0769 1.5533 10 6 4.6901 -5.1622 0.7502 11 6 5.2341 -6.4017 1.0292 12 6 6.1011 -6.5174 2.1153 13 8 6.6579 -7.7167 2.4256 14 6 6.2458 -8.7852 1.7143 15 1 5.5667 -8.6526 0.8851 16 6 6.6936 -10.0541 2.0473 17 7 6.2910 -11.0970 1.3534 18 14 7.8687 -10.2834 3.4812 19 1 7.0919 -10.5008 4.7280 20 1 8.7362 -11.4616 3.2268 21 1 8.7123 -9.0703 3.6288 22 6 6.3870 -5.3933 2.8753 23 7 5.8496 -4.2250 2.5805 24 8 2.0990 -0.8548 1.0001 25 1 -0.3633 0.6466 0.7988 26 1 -0.3634 0.3685 -0.9594 27 1 -0.3634 -1.0150 0.1606 28 1 3.1966 1.3555 0.1606 29 1 1.9201 1.8890 -0.9594 30 1 1.6635 1.9962 0.7988 31 1 2.5622 -0.3919 -1.9265 32 1 1.5175 -1.7682 -1.3430 33 1 4.0831 -2.9294 -0.7773 34 1 2.7015 -3.2882 0.2860 35 1 4.7212 -2.0637 1.8343 36 1 4.0149 -5.0365 -0.0833 37 1 4.9938 -7.2605 0.4200 38 1 6.6041 -11.9850 1.5867 39 1 7.0572 -5.4751 3.7183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168452343.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:46 Heat of formation + Delta-G solvation = -17.175948 kcal Electronic energy + Delta-G solvation = -20753.177872 eV Core-core repulsion = 17469.388814 eV Total energy + Delta-G solvation = -3283.789058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.22000 -41.31499 -39.23238 -36.45237 -34.40417 -33.22510 -32.98750 -31.57323 -29.68906 -28.45755 -27.44455 -26.44109 -24.69800 -22.96083 -22.26660 -20.36029 -20.02783 -19.18514 -17.98778 -17.73039 -17.56958 -16.71577 -16.35631 -16.07968 -15.93022 -15.53346 -15.15428 -14.87263 -14.60820 -14.49216 -14.35746 -13.95507 -13.89142 -13.64341 -13.32155 -13.10464 -12.97680 -12.75676 -12.72421 -12.49807 -12.09220 -11.78791 -11.63105 -11.31277 -11.07010 -10.68509 -10.65275 -10.47711 -10.41580 -8.46453 -8.33534 -6.15536 0.32401 0.65357 1.35408 1.39273 1.56101 2.19911 2.31916 2.82016 2.85839 3.08235 3.18466 3.23178 3.74336 3.79523 3.89859 3.98519 4.07244 4.14766 4.20527 4.30931 4.31491 4.43929 4.66260 4.72406 4.73725 4.84031 4.86732 4.93244 4.98363 5.03293 5.09693 5.31205 5.35627 5.38689 5.40709 5.46335 5.66117 5.99878 6.19299 6.68159 6.88218 7.25932 7.62439 8.65250 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046316 B = 0.002882 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.391196 B = 9713.564514 C =10066.887275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 C -0.155 4.155 4 C -0.157 4.157 5 C 0.048 3.952 6 H 0.107 0.893 7 C 0.132 3.868 8 N -0.725 5.725 9 C 0.334 3.666 10 C -0.185 4.185 11 C -0.142 4.142 12 C 0.027 3.973 13 O -0.240 6.240 14 C -0.396 4.396 15 H 0.081 0.919 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.969 3.031 19 H -0.268 1.268 20 H -0.270 1.270 21 H -0.260 1.260 22 C 0.080 3.920 23 N -0.516 5.516 24 O -0.388 6.388 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.403 0.597 36 H 0.151 0.849 37 H 0.129 0.871 38 H 0.284 0.716 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.932 24.122 -6.266 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 C -0.212 4.212 4 C -0.195 4.195 5 C -0.010 4.010 6 H 0.125 0.875 7 C 0.007 3.993 8 N -0.363 5.363 9 C 0.099 3.901 10 C -0.210 4.210 11 C -0.169 4.169 12 C -0.025 4.025 13 O -0.147 6.147 14 C -0.472 4.472 15 H 0.099 0.901 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.791 3.209 19 H -0.193 1.193 20 H -0.194 1.194 21 H -0.184 1.184 22 C -0.077 4.077 23 N -0.234 5.234 24 O -0.308 6.308 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.239 0.761 36 H 0.169 0.831 37 H 0.147 0.853 38 H 0.093 0.907 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.749 24.453 -5.511 26.549 hybrid contribution 0.159 -1.208 0.057 1.220 sum -8.590 23.245 -5.455 25.375 Atomic orbital electron populations 1.21871 0.92218 1.02568 1.03604 1.22743 0.95758 0.92104 0.86666 1.22045 1.01289 0.93915 1.03973 1.24460 0.96773 1.00443 0.97826 1.23526 0.92940 0.95195 0.89300 0.87545 1.21660 0.92416 0.95884 0.89304 1.44116 1.51439 1.06098 1.34599 1.18341 0.92989 0.87325 0.91447 1.21360 1.05173 0.91131 1.03318 1.21589 0.98641 0.98670 0.98003 1.20344 0.97360 0.87761 0.96994 1.83523 1.60041 1.13312 1.57863 1.20671 1.29261 0.84328 1.12964 0.90112 1.25226 0.99408 0.93268 1.00982 1.69735 1.45689 0.99508 1.41748 0.85232 0.78823 0.78375 0.78427 1.19284 1.19445 1.18414 1.21722 1.01145 0.84979 0.99903 1.67090 1.12860 1.24956 1.18456 1.90033 1.41639 1.62493 1.36633 0.92220 0.88915 0.92579 0.91841 0.88922 0.91854 0.87467 0.87628 0.89353 0.92197 0.76146 0.83112 0.85309 0.90682 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.43 71.98 0.68 -1.06 16 2 C 0.07 0.90 1.69 -18.93 -0.03 0.87 16 3 C -0.16 -1.57 9.27 71.98 0.67 -0.90 16 4 C -0.16 -1.71 7.31 30.84 0.23 -1.48 16 5 C 0.05 0.77 3.77 22.46 0.08 0.85 16 6 H 0.11 1.45 7.11 -2.39 -0.02 1.44 16 7 C 0.13 2.63 4.93 86.38 0.43 3.05 16 8 N -0.73 -19.48 5.73 -344.95 -1.98 -21.45 16 9 C 0.33 11.68 7.65 133.03 1.02 12.70 16 10 C -0.19 -6.61 9.32 22.49 0.21 -6.40 16 11 C -0.14 -6.19 9.25 22.56 0.21 -5.98 16 12 C 0.03 1.30 6.66 22.66 0.15 1.45 16 13 O -0.24 -12.96 8.59 -23.28 -0.20 -13.16 16 14 C -0.40 -23.06 9.96 67.91 0.68 -22.38 16 15 H 0.08 4.87 5.49 -2.91 -0.02 4.86 16 16 C 0.01 0.53 5.49 84.82 0.47 1.00 16 17 N -0.93 -55.12 13.96 21.61 0.30 -54.82 16 18 Si 0.97 45.41 28.62 68.60 1.96 47.38 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 22 C 0.08 3.33 11.14 84.78 0.94 4.27 16 23 N -0.52 -19.97 10.39 -192.67 -2.00 -21.97 16 24 O -0.39 -8.26 12.21 -148.98 -1.82 -10.08 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.66 6.88 -2.39 -0.02 0.65 16 29 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 0.68 8.11 -2.39 -0.02 0.66 16 32 H 0.11 1.11 8.12 -2.39 -0.02 1.09 16 33 H 0.09 1.51 7.93 -2.39 -0.02 1.49 16 34 H 0.06 1.31 7.92 -2.39 -0.02 1.29 16 35 H 0.40 10.36 8.60 -92.71 -0.80 9.56 16 36 H 0.15 4.31 6.70 -2.91 -0.02 4.29 16 37 H 0.13 5.91 5.76 -2.91 -0.02 5.90 16 38 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.17 6.21 8.06 -2.91 -0.02 6.19 16 Total: -1.00 -68.84 326.37 2.26 -66.58 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.27 Total: 21.54 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 5.72 Total: -14.01 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -3.68 Total: -98.25 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -2.02 Total: -23.23 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.96 Total: 47.38 kcal Total: -68.84 2.26 -66.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168452343.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.399 kcal (2) G-P(sol) polarization free energy of solvation -68.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds