Wall clock time and date at job start Tue Mar 31 2020 00:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.46304 * 114.00071 * 2 1 4 4 C 1.46909 * 110.99754 * 243.94987 * 3 2 1 5 5 C 1.50705 * 109.46935 * 66.04717 * 4 3 2 6 6 C 1.34511 * 125.78793 * 89.99588 * 5 4 3 7 7 C 1.41391 * 106.83803 * 180.02562 * 6 5 4 8 8 C 1.34512 * 106.84156 * 359.97438 * 7 6 5 9 9 C 1.50703 * 125.79109 * 180.02562 * 8 7 6 10 10 O 1.34303 * 125.78780 * 269.69433 * 5 4 3 11 11 C 1.46900 * 111.00187 * 120.00220 * 3 2 1 12 12 C 1.53002 * 109.46619 * 298.94938 * 11 3 2 13 13 H 1.09002 * 109.47070 * 55.00278 * 12 11 3 14 14 C 1.47194 * 109.47253 * 295.00217 * 12 11 3 15 15 N 4.33610 * 74.23387 * 36.96646 * 2 1 3 16 16 C 1.52997 * 109.46817 * 175.00098 * 12 11 3 17 17 C 1.50705 * 109.47390 * 184.99865 * 16 12 11 18 18 H 1.08000 * 119.99498 * 0.02562 * 17 16 12 19 19 C 1.37870 * 120.00441 * 180.02562 * 17 16 12 20 20 N 1.31513 * 119.99840 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00083 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47080 * 89.99765 * 21 19 17 23 23 H 1.48497 * 109.46846 * 209.99784 * 21 19 17 24 24 H 1.48499 * 109.47093 * 329.99702 * 21 19 17 25 25 H 1.09007 * 109.47467 * 300.00410 * 1 2 3 26 26 H 1.09005 * 109.46954 * 60.00142 * 1 2 3 27 27 H 1.08992 * 109.47422 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46780 * 186.04488 * 4 3 2 29 29 H 1.09000 * 109.47150 * 306.05011 * 4 3 2 30 30 H 1.07999 * 126.58658 * 359.96710 * 6 5 4 31 31 H 1.07995 * 126.57695 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.46407 * 90.00423 * 9 8 7 33 33 H 1.08995 * 109.46835 * 210.00620 * 9 8 7 34 34 H 1.09000 * 109.46982 * 330.00714 * 9 8 7 35 35 H 1.09000 * 109.47154 * 178.95304 * 11 3 2 36 36 H 1.08996 * 109.47574 * 58.94847 * 11 3 2 37 37 H 1.09001 * 109.47630 * 305.00128 * 16 12 11 38 38 H 1.09004 * 109.47346 * 65.00258 * 16 12 11 39 39 H 0.97002 * 119.99729 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7884 1.5725 -1.2322 5 6 1.8479 1.5987 -2.4095 6 6 1.2287 2.6886 -2.8974 7 6 0.4476 2.2589 -3.9949 8 6 0.6368 0.9324 -4.1123 9 6 0.0036 0.0401 -5.1486 10 8 1.4903 0.5389 -3.1528 11 6 2.8647 1.5386 1.1877 12 6 2.0069 1.4069 2.4478 13 1 1.4920 0.4463 2.4381 14 6 1.0158 2.4946 2.4826 15 7 0.2508 3.3341 2.5094 16 6 2.9024 1.4931 3.6854 17 6 2.0772 1.2413 4.9211 18 1 1.0199 1.0394 4.8324 19 6 2.6719 1.2685 6.1646 20 7 3.9595 1.5137 6.2725 21 14 1.6492 0.9555 7.6961 22 1 1.6485 -0.4975 8.0026 23 1 2.2302 1.7025 8.8405 24 1 0.2557 1.4128 7.4628 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.3074 2.5283 -1.1604 29 1 3.5166 0.7727 -1.3668 30 1 1.3113 3.6979 -2.5223 31 1 -0.1803 2.8772 -4.6192 32 1 0.6448 -0.0061 -6.0288 33 1 -0.1221 -0.9616 -4.7377 34 1 -0.9698 0.4427 -5.4289 35 1 3.3094 2.5331 1.1531 36 1 3.6546 0.7878 1.2058 37 1 3.6910 0.7439 3.6162 38 1 3.3485 2.4860 3.7427 39 1 4.3779 1.5325 7.1474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176311617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:19 Heat of formation + Delta-G solvation = 34.826800 kcal Electronic energy + Delta-G solvation = -21331.041395 eV Core-core repulsion = 18049.507346 eV Total energy + Delta-G solvation = -3281.534049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.59590 -37.91385 -36.01545 -34.26039 -33.60185 -33.20202 -32.35931 -31.14492 -28.40750 -26.59133 -25.56319 -23.95954 -22.15068 -21.81727 -21.70197 -20.17123 -17.49383 -16.74269 -16.52287 -16.26324 -15.86998 -15.35580 -15.04944 -14.48819 -14.26049 -13.71880 -13.63538 -13.47737 -13.18952 -13.05600 -12.85386 -12.80674 -12.54793 -12.39011 -12.05180 -11.90070 -11.66587 -11.47100 -11.23006 -11.07254 -10.70504 -10.55830 -10.23465 -9.93872 -9.82961 -9.57038 -9.24999 -8.73834 -8.45597 -8.31136 -6.10098 -4.13024 1.59961 2.46792 2.77589 2.89110 3.29446 3.36176 3.41013 3.68038 3.78506 4.38285 4.44318 4.71631 4.85201 4.96444 4.99315 5.08845 5.20378 5.22203 5.28217 5.34328 5.47217 5.59529 5.61834 5.69224 5.75690 5.79572 5.87641 5.94260 5.98515 6.08163 6.27902 6.48361 6.50398 6.71652 7.04724 7.17827 7.41437 7.50849 7.85073 8.22348 8.52779 8.91217 9.52424 11.00882 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035530 B = 0.003521 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.869342 B = 7949.561171 C = 8011.834769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.251 6.251 3 N -0.367 5.367 4 C 0.120 3.880 5 C 0.000 4.000 6 C -0.192 4.192 7 C -0.214 4.214 8 C -0.019 4.019 9 C -0.072 4.072 10 O -0.168 6.168 11 C 0.050 3.950 12 C 0.013 3.987 13 H 0.106 0.894 14 C 0.252 3.748 15 N -0.476 5.476 16 C 0.032 3.968 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.027 0.973 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -2.740 -21.096 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.256 6.256 3 N -0.136 5.136 4 C -0.008 4.008 5 C -0.050 4.050 6 C -0.212 4.212 7 C -0.233 4.233 8 C -0.069 4.069 9 C -0.128 4.128 10 O -0.065 6.065 11 C -0.078 4.078 12 C -0.009 4.009 13 H 0.124 0.876 14 C -0.065 4.065 15 N -0.153 5.153 16 C -0.006 4.006 17 C -0.563 4.563 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.139 0.861 29 H 0.086 0.914 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.990 -1.614 -20.855 21.295 hybrid contribution 0.171 -0.642 0.915 1.130 sum -3.819 -2.256 -19.940 20.428 Atomic orbital electron populations 1.22575 0.80917 1.01332 1.00427 1.90684 1.20601 1.17507 1.96800 1.67774 1.34238 1.09661 1.01925 1.20801 0.91853 1.03460 0.84668 1.22012 1.02471 0.84719 0.95790 1.21559 1.01082 0.99803 0.98791 1.21544 1.05566 0.94435 1.01769 1.22401 0.96164 0.94790 0.93584 1.20270 0.99849 0.98357 0.94364 1.83982 1.50189 1.36458 1.35826 1.22605 0.94724 1.02762 0.87737 1.19176 0.92506 0.92808 0.96422 0.87631 1.28941 0.93208 0.93722 0.90663 1.80998 1.11507 1.11741 1.11061 1.19181 0.94068 0.98762 0.88623 1.21118 0.95168 1.49080 0.90973 0.92515 1.24942 0.94926 0.94932 0.99134 1.69935 1.09850 1.48967 1.24294 0.86588 0.80553 0.78335 0.82607 1.20453 1.21139 1.19844 0.93547 0.94390 0.89603 0.86088 0.91395 0.83508 0.83766 0.90333 0.90619 0.89536 0.88278 0.91150 0.94299 0.95501 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.64 11.49 101.05 1.16 1.80 16 2 O -0.25 -3.91 9.83 -13.92 -0.14 -4.05 16 3 N -0.37 -5.35 4.43 -115.05 -0.51 -5.86 16 4 C 0.12 1.44 5.81 -4.97 -0.03 1.41 16 5 C 0.00 0.01 6.55 -35.62 -0.23 -0.23 16 6 C -0.19 -2.38 10.81 -39.70 -0.43 -2.81 16 7 C -0.21 -2.41 10.81 -39.70 -0.43 -2.84 16 8 C -0.02 -0.21 7.32 -35.62 -0.26 -0.47 16 9 C -0.07 -0.51 10.42 36.01 0.38 -0.14 16 10 O -0.17 -2.27 10.65 5.70 0.06 -2.21 16 11 C 0.05 0.74 4.65 -3.82 -0.02 0.72 16 12 C 0.01 0.24 2.23 -93.41 -0.21 0.03 16 13 H 0.11 1.99 7.50 -51.93 -0.39 1.60 16 14 C 0.25 5.25 13.63 -20.76 -0.28 4.97 16 15 N -0.48 -10.72 18.54 42.16 0.78 -9.94 16 16 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 17 C -0.53 -14.02 8.60 -34.44 -0.30 -14.32 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 21 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 26 H 0.04 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.12 1.15 8.00 -51.93 -0.42 0.74 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 1.34 8.03 -51.93 -0.42 0.92 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -31.92 346.68 -5.56 -37.48 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.83 Total: -2.64 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.87 Total: -9.62 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 1.01 Total: -40.51 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.08 Total: -6.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.92 -5.56 -37.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176311617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.307 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds