Wall clock time and date at job start Tue Mar 31 2020 00:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.46304 * 114.00071 * 2 1 4 4 C 1.46909 * 110.99754 * 243.94987 * 3 2 1 5 5 C 1.50705 * 109.46935 * 66.04717 * 4 3 2 6 6 C 1.34511 * 125.78793 * 89.99588 * 5 4 3 7 7 C 1.41391 * 106.83803 * 180.02562 * 6 5 4 8 8 C 1.34512 * 106.84156 * 359.97438 * 7 6 5 9 9 C 1.50703 * 125.79109 * 180.02562 * 8 7 6 10 10 O 1.34303 * 125.78780 * 269.69433 * 5 4 3 11 11 C 1.46900 * 111.00187 * 120.00220 * 3 2 1 12 12 C 1.53002 * 109.46619 * 298.94938 * 11 3 2 13 13 H 1.09002 * 109.47070 * 55.00278 * 12 11 3 14 14 C 1.47194 * 109.47253 * 295.00217 * 12 11 3 15 15 N 4.33610 * 74.23387 * 36.96646 * 2 1 3 16 16 C 1.52997 * 109.46817 * 175.00098 * 12 11 3 17 17 C 1.50705 * 109.47390 * 184.99865 * 16 12 11 18 18 H 1.08000 * 119.99498 * 0.02562 * 17 16 12 19 19 C 1.37870 * 120.00441 * 180.02562 * 17 16 12 20 20 N 1.31513 * 119.99840 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00083 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47080 * 89.99765 * 21 19 17 23 23 H 1.48497 * 109.46846 * 209.99784 * 21 19 17 24 24 H 1.48499 * 109.47093 * 329.99702 * 21 19 17 25 25 H 1.09007 * 109.47467 * 300.00410 * 1 2 3 26 26 H 1.09005 * 109.46954 * 60.00142 * 1 2 3 27 27 H 1.08992 * 109.47422 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46780 * 186.04488 * 4 3 2 29 29 H 1.09000 * 109.47150 * 306.05011 * 4 3 2 30 30 H 1.07999 * 126.58658 * 359.96710 * 6 5 4 31 31 H 1.07995 * 126.57695 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.46407 * 90.00423 * 9 8 7 33 33 H 1.08995 * 109.46835 * 210.00620 * 9 8 7 34 34 H 1.09000 * 109.46982 * 330.00714 * 9 8 7 35 35 H 1.09000 * 109.47154 * 178.95304 * 11 3 2 36 36 H 1.08996 * 109.47574 * 58.94847 * 11 3 2 37 37 H 1.09001 * 109.47630 * 305.00128 * 16 12 11 38 38 H 1.09004 * 109.47346 * 65.00258 * 16 12 11 39 39 H 0.97002 * 119.99729 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7884 1.5725 -1.2322 5 6 1.8479 1.5987 -2.4095 6 6 1.2287 2.6886 -2.8974 7 6 0.4476 2.2589 -3.9949 8 6 0.6368 0.9324 -4.1123 9 6 0.0036 0.0401 -5.1486 10 8 1.4903 0.5389 -3.1528 11 6 2.8647 1.5386 1.1877 12 6 2.0069 1.4069 2.4478 13 1 1.4920 0.4463 2.4381 14 6 1.0158 2.4946 2.4826 15 7 0.2508 3.3341 2.5094 16 6 2.9024 1.4931 3.6854 17 6 2.0772 1.2413 4.9211 18 1 1.0199 1.0394 4.8324 19 6 2.6719 1.2685 6.1646 20 7 3.9595 1.5137 6.2725 21 14 1.6492 0.9555 7.6961 22 1 1.6485 -0.4975 8.0026 23 1 2.2302 1.7025 8.8405 24 1 0.2557 1.4128 7.4628 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.3074 2.5283 -1.1604 29 1 3.5166 0.7727 -1.3668 30 1 1.3113 3.6979 -2.5223 31 1 -0.1803 2.8772 -4.6192 32 1 0.6448 -0.0061 -6.0288 33 1 -0.1221 -0.9616 -4.7377 34 1 -0.9698 0.4427 -5.4289 35 1 3.3094 2.5331 1.1531 36 1 3.6546 0.7878 1.2058 37 1 3.6910 0.7439 3.6162 38 1 3.3485 2.4860 3.7427 39 1 4.3779 1.5325 7.1474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176311617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:18 Heat of formation + Delta-G solvation = 16.352480 kcal Electronic energy + Delta-G solvation = -21331.842502 eV Core-core repulsion = 18049.507346 eV Total energy + Delta-G solvation = -3282.335156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.48076 -39.21061 -37.52282 -35.73065 -35.10356 -34.06954 -33.82971 -32.30557 -29.60717 -27.99201 -26.78022 -25.17886 -23.59490 -23.29594 -22.64686 -21.05466 -18.86904 -18.46389 -17.57075 -17.46556 -17.17187 -16.69453 -16.24617 -16.07664 -15.20989 -15.10330 -14.80584 -14.59114 -14.37201 -14.26633 -13.89943 -13.71694 -13.70631 -13.69629 -13.46626 -13.25820 -13.04003 -12.85087 -12.65912 -12.53710 -12.43263 -12.35098 -11.91474 -11.46074 -11.21979 -10.99956 -10.76384 -10.54633 -9.81862 -9.19473 -8.19681 -6.27521 0.69778 1.40152 1.41927 1.50598 1.52391 1.80979 1.99843 2.03326 2.09868 2.41728 3.15665 3.28190 3.47472 3.82337 4.02701 4.14969 4.22835 4.30250 4.38028 4.49035 4.54129 4.61278 4.64996 4.68754 4.72448 4.75053 4.80928 4.88588 4.92419 4.95369 5.11428 5.29737 5.45828 5.55542 5.63312 5.66977 5.79156 5.92658 6.20019 6.28585 6.80623 6.88961 7.40811 8.91201 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035530 B = 0.003521 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.869342 B = 7949.561171 C = 8011.834769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.266 6.266 3 N -0.375 5.375 4 C 0.119 3.881 5 C -0.020 4.020 6 C -0.201 4.201 7 C -0.228 4.228 8 C -0.023 4.023 9 C -0.072 4.072 10 O -0.188 6.188 11 C 0.056 3.944 12 C 0.025 3.975 13 H 0.108 0.892 14 C 0.262 3.738 15 N -0.506 5.506 16 C 0.040 3.960 17 C -0.540 4.540 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.921 5.921 21 Si 0.947 3.053 22 H -0.268 1.268 23 H -0.283 1.283 24 H -0.277 1.277 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.108 0.892 28 H 0.146 0.854 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.036 0.964 38 H 0.010 0.990 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.140 -3.209 -22.202 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.270 6.270 3 N -0.144 5.144 4 C -0.007 4.007 5 C -0.070 4.070 6 C -0.221 4.221 7 C -0.247 4.247 8 C -0.074 4.074 9 C -0.128 4.128 10 O -0.085 6.085 11 C -0.072 4.072 12 C 0.003 3.997 13 H 0.125 0.875 14 C -0.054 4.054 15 N -0.184 5.184 16 C 0.001 3.999 17 C -0.578 4.578 18 H 0.069 0.931 19 C -0.186 4.186 20 N -0.561 5.561 21 Si 0.773 3.227 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.202 1.202 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.126 0.874 28 H 0.164 0.836 29 H 0.093 0.907 30 H 0.171 0.829 31 H 0.182 0.818 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.028 0.972 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.333 -2.094 -21.974 22.494 hybrid contribution 0.251 -0.490 1.191 1.312 sum -4.082 -2.583 -20.783 21.337 Atomic orbital electron populations 1.22582 0.80447 1.02437 0.99249 1.90657 1.21109 1.18481 1.96788 1.67768 1.34833 1.09118 1.02692 1.20961 0.91606 1.04961 0.83208 1.22180 1.03436 0.84908 0.96456 1.21818 1.01065 1.00076 0.99173 1.21862 1.05992 0.94928 1.01951 1.23187 0.95174 0.95619 0.93378 1.20464 1.00773 0.97828 0.93716 1.83974 1.50920 1.37035 1.36556 1.22511 0.94086 1.04347 0.86238 1.19048 0.91799 0.92132 0.96755 0.87471 1.29309 0.92871 0.93485 0.89721 1.80995 1.12484 1.12788 1.12092 1.18992 0.94117 0.97441 0.89355 1.21513 0.95289 1.48453 0.92556 0.93121 1.25672 0.95921 0.95023 1.01937 1.70019 1.11059 1.50055 1.24985 0.85710 0.78804 0.78710 0.79456 1.19278 1.20819 1.20164 0.95208 0.94931 0.87441 0.83647 0.90705 0.82885 0.81813 0.88702 0.90358 0.87637 0.86563 0.89714 0.94606 0.97196 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.39 11.49 113.37 1.30 2.69 16 2 O -0.27 -8.01 9.83 -50.17 -0.49 -8.50 16 3 N -0.37 -10.41 4.43 -517.90 -2.29 -12.70 16 4 C 0.12 2.68 5.81 85.56 0.50 3.18 16 5 C -0.02 -0.50 6.55 24.83 0.16 -0.33 16 6 C -0.20 -4.78 10.81 22.19 0.24 -4.54 16 7 C -0.23 -4.83 10.81 22.19 0.24 -4.59 16 8 C -0.02 -0.49 7.32 24.83 0.18 -0.31 16 9 C -0.07 -0.86 10.42 71.24 0.74 -0.12 16 10 O -0.19 -4.89 10.65 -2.53 -0.03 -4.92 16 11 C 0.06 1.59 4.65 86.30 0.40 1.99 16 12 C 0.02 0.91 2.23 -12.60 -0.03 0.88 16 13 H 0.11 3.97 7.50 -2.39 -0.02 3.95 16 14 C 0.26 10.85 13.63 89.44 1.22 12.07 16 15 N -0.51 -22.69 18.54 20.01 0.37 -22.32 16 16 C 0.04 1.82 4.42 29.85 0.13 1.96 16 17 C -0.54 -28.80 8.60 25.60 0.22 -28.58 16 18 H 0.05 2.70 7.59 -2.91 -0.02 2.68 16 19 C 0.01 0.75 5.46 84.65 0.46 1.21 16 20 N -0.92 -52.58 13.29 21.44 0.28 -52.29 16 21 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 H 0.03 0.90 8.11 -2.38 -0.02 0.88 16 26 H 0.03 0.91 8.12 -2.38 -0.02 0.90 16 27 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.15 2.46 8.00 -2.39 -0.02 2.44 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 30 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 31 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.12 2.90 8.03 -2.39 -0.02 2.88 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -67.49 346.68 6.67 -60.82 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.03 Total: 8.81 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 5.77 Total: -14.49 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -1.64 Total: -87.31 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.52 Total: -13.42 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.49 6.67 -60.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176311617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.172 kcal (2) G-P(sol) polarization free energy of solvation -67.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds