Wall clock time and date at job start Mon Mar 30 2020 23:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99845 * 2 1 4 4 H 1.48502 * 109.47234 * 240.00121 * 3 2 1 5 5 H 1.48498 * 109.46884 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46848 * 119.99823 * 3 2 1 7 7 C 1.37875 * 120.00331 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.85223 * 180.02562 * 7 2 1 9 9 C 1.53225 * 108.54171 * 231.32611 * 8 7 2 10 10 C 1.52959 * 109.40286 * 305.37610 * 9 8 7 11 11 H 1.09002 * 109.41303 * 303.48989 * 10 9 8 12 12 N 1.46500 * 109.35396 * 183.66617 * 10 9 8 13 13 C 1.34778 * 120.00249 * 84.82480 * 12 10 9 14 14 O 1.21286 * 119.99559 * 359.97438 * 13 12 10 15 15 C 1.50695 * 120.00078 * 179.97438 * 13 12 10 16 16 C 1.53004 * 109.47107 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47343 * 180.02562 * 16 15 13 18 18 C 1.41378 * 128.00370 * 269.67744 * 17 16 15 19 19 N 1.30178 * 106.39708 * 179.89513 * 18 17 16 20 20 O 1.20923 * 111.60066 * 0.38967 * 19 18 17 21 21 C 1.34044 * 111.56859 * 359.74712 * 20 19 18 22 22 C 1.52956 * 109.81702 * 63.59520 * 10 9 8 23 23 C 1.51269 * 120.84916 * 0.02562 * 7 2 1 24 24 H 0.97008 * 120.00001 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.62958 * 351.04667 * 8 7 2 26 26 H 1.09008 * 109.62656 * 111.61037 * 8 7 2 27 27 H 1.09000 * 109.48726 * 185.39513 * 9 8 7 28 28 H 1.09003 * 109.48069 * 65.35037 * 9 8 7 29 29 H 0.97002 * 119.99874 * 264.81912 * 12 10 9 30 30 H 1.09002 * 109.47247 * 299.99956 * 15 13 12 31 31 H 1.08996 * 109.47043 * 59.99914 * 15 13 12 32 32 H 1.09002 * 109.47031 * 300.00088 * 16 15 13 33 33 H 1.08994 * 109.47142 * 59.99494 * 16 15 13 34 34 H 1.08003 * 126.80440 * 0.03378 * 18 17 16 35 35 H 1.08002 * 126.77696 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.48335 * 56.38114 * 22 10 9 37 37 H 1.09007 * 109.48184 * 176.42166 * 22 10 9 38 38 H 1.09004 * 109.62594 * 8.95559 * 23 7 2 39 39 H 1.08997 * 109.62459 * 248.39081 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 6 3.5170 -1.2164 0.0000 9 6 3.9912 -2.1305 -1.1346 10 6 3.3404 -3.5066 -0.9841 11 1 3.5739 -3.9122 0.0003 12 7 3.8610 -4.4054 -2.0172 13 6 5.0171 -5.0679 -1.8139 14 8 5.6266 -4.9194 -0.7759 15 6 5.5523 -5.9929 -2.8764 16 6 6.8660 -6.6139 -2.3973 17 6 7.4016 -7.5385 -3.4600 18 6 7.1508 -8.9208 -3.6181 19 7 7.8202 -9.2979 -4.6690 20 8 8.4332 -8.3784 -5.1599 21 6 8.2394 -7.2388 -4.4812 22 6 1.8235 -3.3821 -1.1359 23 6 1.2678 -2.5151 -0.0017 24 1 -0.4850 0.8401 0.0004 25 1 3.8983 -0.2077 -0.1589 26 1 3.8772 -1.6006 0.9545 27 1 5.0753 -2.2342 -1.0890 28 1 3.7072 -1.6970 -2.0935 29 1 3.3737 -4.5239 -2.8475 30 1 4.8266 -6.7829 -3.0695 31 1 5.7290 -5.4300 -3.7928 32 1 7.5919 -5.8241 -2.2038 33 1 6.6889 -7.1768 -1.4809 34 1 6.5256 -9.5407 -2.9925 35 1 8.6667 -6.2724 -4.7048 36 1 1.5908 -2.9189 -2.0947 37 1 1.3711 -4.3729 -1.0912 38 1 0.2037 -2.3408 -0.1618 39 1 1.4193 -3.0196 0.9525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178408163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:02 Heat of formation + Delta-G solvation = -2.992721 kcal Electronic energy + Delta-G solvation = -21004.377134 eV Core-core repulsion = 17721.203107 eV Total energy + Delta-G solvation = -3283.174027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.20317 -39.64200 -36.94658 -35.46252 -33.72733 -32.78598 -31.71266 -30.79094 -29.70373 -27.46434 -25.26494 -23.15342 -22.27269 -21.55241 -21.20433 -19.95822 -19.45623 -18.18221 -17.77441 -16.95591 -15.99754 -15.70754 -15.51133 -15.04950 -14.47831 -13.91686 -13.83675 -13.28512 -13.15030 -12.93046 -12.70368 -12.42876 -12.22718 -12.09268 -11.82650 -11.58126 -11.10966 -11.04957 -10.82188 -10.72120 -10.56850 -10.24298 -10.06234 -9.83447 -9.75780 -9.49972 -9.02013 -8.88162 -8.50891 -8.36664 -6.13765 -4.04650 1.21587 1.96246 2.87664 2.97385 3.27049 3.33951 3.35814 3.52161 4.05043 4.36212 4.42718 4.60286 4.80188 4.86791 5.09678 5.13883 5.19686 5.35332 5.41386 5.68439 5.71498 5.81245 5.86100 5.95856 6.16080 6.43818 6.44266 6.66976 6.73792 6.85041 6.92612 7.02770 7.20252 7.39288 7.60831 7.67728 7.73395 7.89927 7.95696 8.34452 8.52065 8.92406 9.51287 10.95897 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042886 B = 0.002989 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.740318 B = 9364.266438 C = 9651.382880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.491 4.491 8 C -0.009 4.009 9 C -0.113 4.113 10 C 0.153 3.847 11 H 0.078 0.922 12 N -0.724 5.724 13 C 0.507 3.493 14 O -0.546 6.546 15 C -0.137 4.137 16 C -0.028 4.028 17 C -0.196 4.196 18 C -0.007 4.007 19 N -0.368 5.368 20 O 0.095 5.905 21 C -0.059 4.059 22 C -0.114 4.114 23 C 0.013 3.987 24 H 0.265 0.735 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.394 0.606 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.190 0.810 35 H 0.217 0.783 36 H 0.054 0.946 37 H 0.035 0.965 38 H 0.061 0.939 39 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.585 -12.386 -9.252 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.510 4.510 8 C -0.047 4.047 9 C -0.152 4.152 10 C 0.050 3.950 11 H 0.096 0.904 12 N -0.374 5.374 13 C 0.292 3.708 14 O -0.423 6.423 15 C -0.177 4.177 16 C -0.066 4.066 17 C -0.200 4.200 18 C -0.186 4.186 19 N -0.072 5.072 20 O 0.030 5.970 21 C -0.141 4.141 22 C -0.153 4.153 23 C -0.025 4.025 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.227 0.773 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.207 0.793 35 H 0.233 0.767 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 11.993 -13.333 -9.142 20.129 hybrid contribution -0.122 1.559 0.045 1.565 sum 11.871 -11.774 -9.098 19.034 Atomic orbital electron populations 1.69817 1.06145 1.27109 1.49728 1.24833 0.94729 0.98568 0.94470 0.86651 0.79390 0.82952 0.79054 1.20008 1.21862 1.19957 1.20037 0.89331 0.91506 1.50110 1.19593 0.96585 0.94542 0.93960 1.21894 0.97250 0.95266 1.00775 1.21053 0.94473 0.88999 0.90433 0.90390 1.46447 1.23802 1.45803 1.21326 1.20520 0.81218 0.80817 0.88204 1.90704 1.58196 1.65275 1.28162 1.21668 0.98128 0.99224 0.98689 1.19628 0.95706 0.96674 0.94638 1.21541 1.02690 0.95110 1.00678 1.25063 1.01975 0.94747 0.96788 1.73888 1.09486 1.11999 1.11788 1.84815 1.52768 1.13732 1.45712 1.25905 1.01159 0.92976 0.94034 1.21923 0.92384 0.98595 1.02356 1.19332 0.98718 0.92771 0.91690 0.92492 0.95641 0.96136 0.94485 0.93068 0.77267 0.89009 0.88997 0.89544 0.89497 0.79303 0.76672 0.92732 0.94621 0.92068 0.97547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 12.73 55.43 0.71 -24.46 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.89 21.11 26.80 -169.99 -4.56 16.55 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.49 -12.71 5.51 -98.93 -0.55 -13.26 16 8 C -0.01 -0.20 5.59 -27.49 -0.15 -0.36 16 9 C -0.11 -2.31 5.50 -26.64 -0.15 -2.45 16 10 C 0.15 2.88 2.35 -67.97 -0.16 2.72 16 11 H 0.08 1.64 7.57 -51.93 -0.39 1.25 16 12 N -0.72 -10.54 5.07 -53.85 -0.27 -10.82 16 13 C 0.51 7.17 7.79 -10.99 -0.09 7.09 16 14 O -0.55 -9.97 15.64 5.55 0.09 -9.88 16 15 C -0.14 -1.27 5.68 -27.88 -0.16 -1.42 16 16 C -0.03 -0.26 5.09 -27.88 -0.14 -0.40 16 17 C -0.20 -1.64 5.58 -104.42 -0.58 -2.23 16 18 C -0.01 -0.06 12.16 -17.06 -0.21 -0.27 16 19 N -0.37 -3.96 12.07 30.35 0.37 -3.60 16 20 O 0.10 0.90 11.20 17.17 0.19 1.09 16 21 C -0.06 -0.43 12.26 29.74 0.36 -0.06 16 22 C -0.11 -2.25 5.40 -26.65 -0.14 -2.39 16 23 C 0.01 0.31 5.97 -27.50 -0.16 0.14 16 24 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.03 0.59 5.17 -51.93 -0.27 0.32 16 26 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.39 4.58 8.60 -40.82 -0.35 4.23 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.19 1.29 8.06 -52.48 -0.42 0.86 16 35 H 0.22 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 39 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -31.22 323.36 -6.41 -37.64 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.58 Total: -0.47 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -2.22 Total: -10.92 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.80 Total: -38.88 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.28 Total: -8.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.56 Total: 16.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.22 -6.41 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178408163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.643 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds