Wall clock time and date at job start Mon Mar 30 2020 23:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99845 * 2 1 4 4 H 1.48502 * 109.47234 * 240.00121 * 3 2 1 5 5 H 1.48498 * 109.46884 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46848 * 119.99823 * 3 2 1 7 7 C 1.37875 * 120.00331 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.85223 * 180.02562 * 7 2 1 9 9 C 1.53225 * 108.54171 * 231.32611 * 8 7 2 10 10 C 1.52959 * 109.40286 * 305.37610 * 9 8 7 11 11 H 1.09002 * 109.41303 * 303.48989 * 10 9 8 12 12 N 1.46500 * 109.35396 * 183.66617 * 10 9 8 13 13 C 1.34778 * 120.00249 * 84.82480 * 12 10 9 14 14 O 1.21286 * 119.99559 * 359.97438 * 13 12 10 15 15 C 1.50695 * 120.00078 * 179.97438 * 13 12 10 16 16 C 1.53004 * 109.47107 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47343 * 180.02562 * 16 15 13 18 18 C 1.41378 * 128.00370 * 269.67744 * 17 16 15 19 19 N 1.30178 * 106.39708 * 179.89513 * 18 17 16 20 20 O 1.20923 * 111.60066 * 0.38967 * 19 18 17 21 21 C 1.34044 * 111.56859 * 359.74712 * 20 19 18 22 22 C 1.52956 * 109.81702 * 63.59520 * 10 9 8 23 23 C 1.51269 * 120.84916 * 0.02562 * 7 2 1 24 24 H 0.97008 * 120.00001 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.62958 * 351.04667 * 8 7 2 26 26 H 1.09008 * 109.62656 * 111.61037 * 8 7 2 27 27 H 1.09000 * 109.48726 * 185.39513 * 9 8 7 28 28 H 1.09003 * 109.48069 * 65.35037 * 9 8 7 29 29 H 0.97002 * 119.99874 * 264.81912 * 12 10 9 30 30 H 1.09002 * 109.47247 * 299.99956 * 15 13 12 31 31 H 1.08996 * 109.47043 * 59.99914 * 15 13 12 32 32 H 1.09002 * 109.47031 * 300.00088 * 16 15 13 33 33 H 1.08994 * 109.47142 * 59.99494 * 16 15 13 34 34 H 1.08003 * 126.80440 * 0.03378 * 18 17 16 35 35 H 1.08002 * 126.77696 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.48335 * 56.38114 * 22 10 9 37 37 H 1.09007 * 109.48184 * 176.42166 * 22 10 9 38 38 H 1.09004 * 109.62594 * 8.95559 * 23 7 2 39 39 H 1.08997 * 109.62459 * 248.39081 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 6 3.5170 -1.2164 0.0000 9 6 3.9912 -2.1305 -1.1346 10 6 3.3404 -3.5066 -0.9841 11 1 3.5739 -3.9122 0.0003 12 7 3.8610 -4.4054 -2.0172 13 6 5.0171 -5.0679 -1.8139 14 8 5.6266 -4.9194 -0.7759 15 6 5.5523 -5.9929 -2.8764 16 6 6.8660 -6.6139 -2.3973 17 6 7.4016 -7.5385 -3.4600 18 6 7.1508 -8.9208 -3.6181 19 7 7.8202 -9.2979 -4.6690 20 8 8.4332 -8.3784 -5.1599 21 6 8.2394 -7.2388 -4.4812 22 6 1.8235 -3.3821 -1.1359 23 6 1.2678 -2.5151 -0.0017 24 1 -0.4850 0.8401 0.0004 25 1 3.8983 -0.2077 -0.1589 26 1 3.8772 -1.6006 0.9545 27 1 5.0753 -2.2342 -1.0890 28 1 3.7072 -1.6970 -2.0935 29 1 3.3737 -4.5239 -2.8475 30 1 4.8266 -6.7829 -3.0695 31 1 5.7290 -5.4300 -3.7928 32 1 7.5919 -5.8241 -2.2038 33 1 6.6889 -7.1768 -1.4809 34 1 6.5256 -9.5407 -2.9925 35 1 8.6667 -6.2724 -4.7048 36 1 1.5908 -2.9189 -2.0947 37 1 1.3711 -4.3729 -1.0912 38 1 0.2037 -2.3408 -0.1618 39 1 1.4193 -3.0196 0.9525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178408163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:02 Heat of formation + Delta-G solvation = -23.077305 kcal Electronic energy + Delta-G solvation = -21005.248067 eV Core-core repulsion = 17721.203107 eV Total energy + Delta-G solvation = -3284.044960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.86115 -40.87224 -38.51125 -36.23128 -35.32088 -33.62344 -33.26964 -31.66111 -31.44786 -29.09661 -26.22846 -24.02756 -23.68343 -23.28659 -22.03742 -21.27600 -20.95566 -18.81544 -18.48677 -18.27060 -17.56080 -17.00449 -16.54709 -16.38430 -15.78718 -15.22114 -14.88485 -14.72765 -14.49070 -14.13210 -13.96941 -13.90003 -13.55031 -13.31395 -13.18289 -12.76488 -12.65166 -12.52807 -12.45674 -11.99641 -11.81310 -11.79347 -11.58876 -11.24309 -11.04854 -10.76752 -10.63015 -10.54355 -10.25123 -9.83904 -8.18214 -6.12174 0.62904 1.31783 1.38929 1.41019 1.48425 1.77822 2.32354 2.40210 2.49943 3.10467 3.42180 3.81171 3.82942 4.05865 4.11399 4.16197 4.23320 4.44343 4.51588 4.52793 4.70502 4.72457 4.84852 4.87543 4.96664 5.07046 5.08007 5.14302 5.18370 5.21696 5.25572 5.30136 5.55567 5.60072 5.72981 5.76201 5.83405 6.34413 6.73966 6.93612 7.34479 7.41978 7.46248 8.92484 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042886 B = 0.002989 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.740318 B = 9364.266438 C = 9651.382880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.026 3.974 3 Si 0.940 3.060 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.501 4.501 8 C -0.012 4.012 9 C -0.105 4.105 10 C 0.165 3.835 11 H 0.054 0.946 12 N -0.716 5.716 13 C 0.505 3.495 14 O -0.589 6.589 15 C -0.123 4.123 16 C -0.020 4.020 17 C -0.207 4.207 18 C -0.011 4.011 19 N -0.401 5.401 20 O 0.084 5.916 21 C -0.042 4.042 22 C -0.101 4.101 23 C 0.007 3.993 24 H 0.264 0.736 25 H 0.027 0.973 26 H 0.013 0.987 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.413 0.587 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.204 0.796 35 H 0.253 0.747 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.033 0.967 39 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.047 -12.828 -11.029 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.767 3.233 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.521 4.521 8 C -0.051 4.051 9 C -0.144 4.144 10 C 0.060 3.940 11 H 0.072 0.928 12 N -0.367 5.367 13 C 0.294 3.706 14 O -0.470 6.470 15 C -0.163 4.163 16 C -0.059 4.059 17 C -0.211 4.211 18 C -0.189 4.189 19 N -0.107 5.107 20 O 0.021 5.979 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.031 4.031 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.249 0.751 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.221 0.779 35 H 0.269 0.731 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 13.471 -13.792 -10.963 22.178 hybrid contribution -0.567 1.652 0.661 1.867 sum 12.905 -12.140 -10.302 20.495 Atomic orbital electron populations 1.69941 1.07483 1.27588 1.51785 1.25543 0.95344 1.01550 0.94821 0.85849 0.78401 0.79656 0.79421 1.18777 1.21911 1.19725 1.20604 0.90858 0.92070 1.48526 1.19613 0.95004 0.95482 0.94953 1.21765 0.97593 0.95510 0.99522 1.20580 0.93647 0.88957 0.90775 0.92774 1.46187 1.24316 1.45094 1.21085 1.21366 0.80250 0.80489 0.88531 1.90696 1.59306 1.66649 1.30342 1.21656 0.98327 0.98784 0.97523 1.19484 0.95584 0.96437 0.94380 1.21443 1.03807 0.94704 1.01165 1.25427 1.01596 0.95447 0.96419 1.73897 1.10820 1.13011 1.12930 1.84789 1.52795 1.14250 1.46052 1.26581 0.99614 0.93388 0.92722 1.21683 0.93080 0.98818 1.00313 1.19303 0.97315 0.93383 0.93089 0.92698 0.95499 0.96864 0.93886 0.92565 0.75118 0.86889 0.86312 0.89984 0.90731 0.77869 0.73133 0.92403 0.92301 0.94829 0.98567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.54 12.73 21.45 0.27 -53.26 16 2 C 0.03 1.41 5.46 84.65 0.46 1.88 16 3 Si 0.94 43.14 26.80 68.60 1.84 44.98 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.50 -26.07 5.51 -16.17 -0.09 -26.16 16 8 C -0.01 -0.57 5.59 30.10 0.17 -0.40 16 9 C -0.10 -4.11 5.50 30.66 0.17 -3.95 16 10 C 0.17 5.95 2.35 44.96 0.11 6.06 16 11 H 0.05 2.24 7.57 -2.39 -0.02 2.23 16 12 N -0.72 -18.81 5.07 -442.66 -2.24 -21.05 16 13 C 0.51 12.98 7.79 87.66 0.68 13.67 16 14 O -0.59 -20.74 15.64 -3.05 -0.05 -20.79 16 15 C -0.12 -1.82 5.68 29.85 0.17 -1.65 16 16 C -0.02 -0.32 5.09 29.85 0.15 -0.17 16 17 C -0.21 -2.90 5.58 -19.74 -0.11 -3.01 16 18 C -0.01 -0.17 12.16 85.71 1.04 0.87 16 19 N -0.40 -8.03 12.07 -59.26 -0.72 -8.74 16 20 O 0.08 1.42 11.20 71.60 0.80 2.22 16 21 C -0.04 -0.47 12.26 67.17 0.82 0.35 16 22 C -0.10 -3.84 5.40 30.64 0.17 -3.67 16 23 C 0.01 0.35 5.97 30.09 0.18 0.53 16 24 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 25 H 0.03 1.21 5.17 -2.39 -0.01 1.19 16 26 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.41 8.01 8.60 -92.71 -0.80 7.22 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 33 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.20 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.25 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.03 1.80 7.07 -2.38 -0.02 1.78 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: -1.00 -68.80 323.36 4.09 -64.71 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.26 Total: 7.59 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 3.92 Total: -15.65 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -2.69 Total: -83.06 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.75 Total: -18.57 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.84 Total: 44.98 kcal Total: -68.80 4.09 -64.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178408163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.634 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds