Wall clock time and date at job start Tue Mar 31 2020 00:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35976 * 120.25162 * 2 1 4 4 C 1.41593 * 119.01277 * 180.02562 * 3 2 1 5 5 C 1.47457 * 120.25875 * 179.97438 * 4 3 2 6 6 O 1.21602 * 120.00013 * 180.02562 * 5 4 3 7 7 N 1.34774 * 119.99494 * 0.02565 * 5 4 3 8 8 C 1.46503 * 119.99652 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47353 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47304 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46820 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00664 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99906 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00182 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99651 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47382 * 90.00134 * 15 13 11 17 17 H 1.48500 * 109.46941 * 209.99754 * 15 13 11 18 18 H 1.48495 * 109.47117 * 329.99466 * 15 13 11 19 19 C 1.37998 * 119.48378 * 0.02562 * 4 3 2 20 20 N 1.34604 * 120.46081 * 0.02562 * 19 4 3 21 21 C 1.46499 * 119.47705 * 179.97438 * 20 19 4 22 22 C 1.34536 * 121.04074 * 0.23141 * 20 19 4 23 23 O 1.21965 * 119.74857 * 179.73898 * 22 20 19 24 24 H 1.08993 * 109.47561 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47474 * 120.00024 * 1 2 3 26 26 H 1.09005 * 109.47188 * 239.99381 * 1 2 3 27 27 H 1.08003 * 120.48851 * 0.04552 * 3 2 1 28 28 H 0.96993 * 120.00957 * 359.97438 * 7 5 4 29 29 H 1.08996 * 109.47376 * 299.99765 * 8 7 5 30 30 H 1.08998 * 109.47081 * 59.99808 * 8 7 5 31 31 H 1.09001 * 109.47336 * 300.00034 * 9 8 7 32 32 H 1.09003 * 109.47038 * 59.99632 * 9 8 7 33 33 H 1.09001 * 109.46985 * 300.00289 * 10 9 8 34 34 H 1.08998 * 109.47073 * 60.00219 * 10 9 8 35 35 H 0.97002 * 120.00449 * 179.97438 * 14 13 11 36 36 H 1.08000 * 119.77180 * 180.02562 * 19 4 3 37 37 H 1.09002 * 109.47391 * 359.97438 * 21 20 19 38 38 H 1.09001 * 109.46813 * 239.99984 * 21 20 19 39 39 H 1.09004 * 109.47041 * 120.00111 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1920 1.1746 0.0000 4 6 3.6076 1.1440 -0.0006 5 6 4.3780 2.4013 -0.0011 6 8 5.5936 2.3695 -0.0021 7 7 3.7348 3.5856 -0.0006 8 6 4.5002 4.8348 -0.0006 9 6 3.5367 6.0233 -0.0006 10 6 4.3360 7.3279 0.0000 11 6 3.3869 8.4985 0.0006 12 1 2.3203 8.3290 0.0010 13 6 3.8803 9.7860 0.0018 14 7 3.0521 10.8076 0.0018 15 14 5.7252 10.0793 0.0019 16 1 6.2139 10.1583 -1.3981 17 1 6.0237 11.3538 0.7030 18 1 6.4044 8.9589 0.7009 19 6 4.2607 -0.0717 -0.0016 20 7 3.5615 -1.2219 -0.0026 21 6 4.2768 -2.5004 -0.0043 22 6 2.2162 -1.2159 -0.0073 23 8 1.6063 -2.2722 -0.0130 24 1 -0.3634 1.0276 0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 -0.3634 -0.5139 0.8900 27 1 1.6641 2.1168 0.0007 28 1 2.7652 3.6110 -0.0002 29 1 5.1284 4.8760 0.8891 30 1 5.1278 4.8764 -0.8908 31 1 2.9087 5.9820 -0.8906 32 1 2.9087 5.9819 0.8893 33 1 4.9637 7.3690 0.8902 34 1 4.9642 7.3695 -0.8898 35 1 3.3992 11.7134 0.0030 36 1 5.3403 -0.1005 -0.0016 37 1 5.3511 -2.3157 -0.0050 38 1 4.0055 -3.0673 -0.8949 39 1 4.0061 -3.0694 0.8851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195125618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:22 Heat of formation + Delta-G solvation = -53.804655 kcal Electronic energy + Delta-G solvation = -20600.212546 eV Core-core repulsion = 17314.835148 eV Total energy + Delta-G solvation = -3285.377398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.90831 -39.59030 -37.19645 -35.77277 -35.57037 -33.35430 -31.88411 -31.21896 -28.48057 -27.58110 -27.08346 -24.22525 -23.25067 -22.45561 -20.85704 -20.09027 -18.09115 -17.91616 -16.96761 -16.74356 -16.64291 -15.99316 -15.53592 -15.42311 -14.34780 -14.20546 -14.07604 -13.96424 -13.70012 -13.61165 -12.95288 -12.94997 -12.73224 -12.60435 -12.22430 -12.13400 -11.95944 -11.84989 -11.12125 -10.92334 -10.41136 -10.30420 -10.29678 -10.03376 -9.83751 -9.67507 -9.25544 -8.97933 -8.57832 -8.23662 -6.08449 -4.07384 0.39985 1.03320 2.08825 2.78592 3.22591 3.29502 3.37335 3.40950 3.44103 4.15999 4.19069 4.42301 4.43787 4.54934 4.63300 4.76559 4.77834 5.08928 5.19440 5.25629 5.41691 5.46540 5.52060 5.59644 5.60977 5.80211 5.93971 5.96448 6.01808 6.27382 6.40152 6.53276 6.63623 6.74646 7.19409 7.32963 7.52615 7.54542 7.73808 8.19601 8.47842 8.95378 9.53684 11.04779 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033996 B = 0.002919 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.440117 B = 9590.859359 C =10377.941634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.210 4.210 3 C -0.004 4.004 4 C -0.243 4.243 5 C 0.572 3.428 6 O -0.551 6.551 7 N -0.719 5.719 8 C 0.115 3.885 9 C -0.114 4.114 10 C -0.011 4.011 11 C -0.523 4.523 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.198 3.802 20 N -0.492 5.492 21 C 0.060 3.940 22 C 0.517 3.483 23 O -0.539 6.539 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.140 0.860 28 H 0.399 0.601 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.264 0.736 36 H 0.179 0.821 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 -25.020 0.029 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.214 4.214 3 C -0.025 4.025 4 C -0.251 4.251 5 C 0.359 3.641 6 O -0.430 6.430 7 N -0.370 5.370 8 C -0.008 4.008 9 C -0.152 4.152 10 C -0.049 4.049 11 C -0.561 4.561 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.189 1.189 19 C 0.065 3.935 20 N -0.200 5.200 21 C -0.081 4.081 22 C 0.319 3.681 23 O -0.420 6.420 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.158 0.842 28 H 0.234 0.766 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.196 0.804 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.993 -25.567 0.029 25.587 hybrid contribution 0.553 0.476 -0.023 0.730 sum 1.546 -25.092 0.006 25.139 Atomic orbital electron populations 1.20430 0.88459 1.02596 1.02905 1.20676 0.98148 0.91428 1.11158 1.21450 0.92333 0.98687 0.90044 1.19473 0.93734 0.93229 1.18682 1.17597 0.86955 0.83063 0.76483 1.90783 1.13350 1.87570 1.51333 1.46008 1.10598 1.05931 1.74430 1.21696 0.95090 0.81812 1.02167 1.21721 0.97947 0.93749 1.01821 1.19499 0.96224 0.92470 0.96687 1.21094 0.94500 0.89317 1.51176 0.90994 1.25031 0.97860 0.96130 0.94452 1.69905 1.34649 0.98678 1.50927 0.86775 0.86148 0.77787 0.78586 1.20243 1.21384 1.18877 1.22323 0.98856 0.84031 0.88264 1.45213 1.08575 1.08047 1.58117 1.22271 0.97201 0.83665 1.04974 1.17064 0.80384 0.91306 0.79326 1.90930 1.66157 1.33196 1.51751 0.91073 0.91182 0.91191 0.84211 0.76616 0.91526 0.91538 0.92041 0.92019 0.96282 0.96716 0.92671 0.80354 0.88781 0.89613 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.62 36.00 0.35 -0.40 16 2 C -0.21 -2.10 5.89 -104.48 -0.62 -2.72 16 3 C 0.00 -0.03 9.18 -39.12 -0.36 -0.39 16 4 C -0.24 -2.46 5.88 -104.95 -0.62 -3.07 16 5 C 0.57 7.43 7.76 -12.51 -0.10 7.33 16 6 O -0.55 -8.88 16.32 5.28 0.09 -8.79 16 7 N -0.72 -9.05 5.51 -61.37 -0.34 -9.39 16 8 C 0.11 1.77 5.67 -4.04 -0.02 1.75 16 9 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 10 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 11 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 12 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 13 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 14 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 15 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 19 C 0.20 1.69 9.88 -16.42 -0.16 1.53 16 20 N -0.49 -4.27 2.95 -126.73 -0.37 -4.64 16 21 C 0.06 0.33 10.01 59.85 0.60 0.92 16 22 C 0.52 5.87 7.39 -15.41 -0.11 5.75 16 23 O -0.54 -7.58 16.47 4.95 0.08 -7.50 16 24 H 0.07 0.47 7.88 -51.93 -0.41 0.06 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.14 0.96 6.37 -52.48 -0.33 0.62 16 28 H 0.40 3.98 6.54 -40.82 -0.27 3.72 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 34 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 36 H 0.18 1.20 7.34 -52.49 -0.39 0.81 16 37 H 0.09 0.23 7.70 -51.93 -0.40 -0.17 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -34.98 331.19 -6.71 -41.68 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.53 Total: -1.63 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.73 Total: -4.77 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.06 Total: -40.68 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.17 Total: -16.29 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.98 -6.71 -41.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195125618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.121 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds