Wall clock time and date at job start Tue Mar 31 2020 00:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35976 * 120.25162 * 2 1 4 4 C 1.41593 * 119.01277 * 180.02562 * 3 2 1 5 5 C 1.47457 * 120.25875 * 179.97438 * 4 3 2 6 6 O 1.21602 * 120.00013 * 180.02562 * 5 4 3 7 7 N 1.34774 * 119.99494 * 0.02565 * 5 4 3 8 8 C 1.46503 * 119.99652 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47353 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47304 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46820 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00664 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99906 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00182 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99651 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47382 * 90.00134 * 15 13 11 17 17 H 1.48500 * 109.46941 * 209.99754 * 15 13 11 18 18 H 1.48495 * 109.47117 * 329.99466 * 15 13 11 19 19 C 1.37998 * 119.48378 * 0.02562 * 4 3 2 20 20 N 1.34604 * 120.46081 * 0.02562 * 19 4 3 21 21 C 1.46499 * 119.47705 * 179.97438 * 20 19 4 22 22 C 1.34536 * 121.04074 * 0.23141 * 20 19 4 23 23 O 1.21965 * 119.74857 * 179.73898 * 22 20 19 24 24 H 1.08993 * 109.47561 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47474 * 120.00024 * 1 2 3 26 26 H 1.09005 * 109.47188 * 239.99381 * 1 2 3 27 27 H 1.08003 * 120.48851 * 0.04552 * 3 2 1 28 28 H 0.96993 * 120.00957 * 359.97438 * 7 5 4 29 29 H 1.08996 * 109.47376 * 299.99765 * 8 7 5 30 30 H 1.08998 * 109.47081 * 59.99808 * 8 7 5 31 31 H 1.09001 * 109.47336 * 300.00034 * 9 8 7 32 32 H 1.09003 * 109.47038 * 59.99632 * 9 8 7 33 33 H 1.09001 * 109.46985 * 300.00289 * 10 9 8 34 34 H 1.08998 * 109.47073 * 60.00219 * 10 9 8 35 35 H 0.97002 * 120.00449 * 179.97438 * 14 13 11 36 36 H 1.08000 * 119.77180 * 180.02562 * 19 4 3 37 37 H 1.09002 * 109.47391 * 359.97438 * 21 20 19 38 38 H 1.09001 * 109.46813 * 239.99984 * 21 20 19 39 39 H 1.09004 * 109.47041 * 120.00111 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1920 1.1746 0.0000 4 6 3.6076 1.1440 -0.0006 5 6 4.3780 2.4013 -0.0011 6 8 5.5936 2.3695 -0.0021 7 7 3.7348 3.5856 -0.0006 8 6 4.5002 4.8348 -0.0006 9 6 3.5367 6.0233 -0.0006 10 6 4.3360 7.3279 0.0000 11 6 3.3869 8.4985 0.0006 12 1 2.3203 8.3290 0.0010 13 6 3.8803 9.7860 0.0018 14 7 3.0521 10.8076 0.0018 15 14 5.7252 10.0793 0.0019 16 1 6.2139 10.1583 -1.3981 17 1 6.0237 11.3538 0.7030 18 1 6.4044 8.9589 0.7009 19 6 4.2607 -0.0717 -0.0016 20 7 3.5615 -1.2219 -0.0026 21 6 4.2768 -2.5004 -0.0043 22 6 2.2162 -1.2159 -0.0073 23 8 1.6063 -2.2722 -0.0130 24 1 -0.3634 1.0276 0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 -0.3634 -0.5139 0.8900 27 1 1.6641 2.1168 0.0007 28 1 2.7652 3.6110 -0.0002 29 1 5.1284 4.8760 0.8891 30 1 5.1278 4.8764 -0.8908 31 1 2.9087 5.9820 -0.8906 32 1 2.9087 5.9819 0.8893 33 1 4.9637 7.3690 0.8902 34 1 4.9642 7.3695 -0.8898 35 1 3.3992 11.7134 0.0030 36 1 5.3403 -0.1005 -0.0016 37 1 5.3511 -2.3157 -0.0050 38 1 4.0055 -3.0673 -0.8949 39 1 4.0061 -3.0694 0.8851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195125618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:22 Heat of formation + Delta-G solvation = -77.789925 kcal Electronic energy + Delta-G solvation = -20601.252625 eV Core-core repulsion = 17314.835148 eV Total energy + Delta-G solvation = -3286.417477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.67367 -40.62252 -38.07129 -36.94735 -36.45860 -35.09600 -33.34564 -32.29968 -29.39117 -28.57476 -28.11934 -25.41150 -24.17304 -23.57389 -22.20623 -21.34277 -19.13733 -18.76082 -18.60690 -17.78967 -17.37781 -16.80896 -16.66292 -16.62238 -16.13664 -15.36134 -15.06387 -14.77473 -14.72334 -14.61151 -14.29204 -13.79057 -13.69537 -13.60810 -13.40322 -13.28870 -12.81307 -12.77903 -12.67849 -12.61830 -11.89758 -11.75419 -11.55181 -11.29453 -11.24863 -11.01812 -10.99888 -10.73491 -10.08736 -9.02836 -8.26711 -6.30450 -0.30262 0.20306 1.39574 1.40758 1.41388 1.52846 1.87209 2.23759 2.38996 2.60702 3.09463 3.47780 3.56023 3.73869 3.77311 3.98055 4.15752 4.26765 4.28080 4.34204 4.51757 4.56175 4.70026 4.78343 4.79715 4.87884 4.94642 4.96971 5.08229 5.14501 5.25674 5.31875 5.41991 5.54592 5.60774 5.68487 5.79856 6.30533 6.55837 6.74485 6.78395 7.20849 7.34513 8.89743 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033996 B = 0.002919 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.440117 B = 9590.859359 C =10377.941634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.230 4.230 3 C 0.010 3.990 4 C -0.257 4.257 5 C 0.576 3.424 6 O -0.583 6.583 7 N -0.713 5.713 8 C 0.128 3.872 9 C -0.103 4.103 10 C -0.013 4.013 11 C -0.530 4.530 12 H 0.037 0.963 13 C 0.003 3.997 14 N -0.952 5.952 15 Si 0.947 3.053 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.245 1.245 19 C 0.216 3.784 20 N -0.487 5.487 21 C 0.052 3.948 22 C 0.506 3.494 23 O -0.576 6.576 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.162 0.838 28 H 0.412 0.588 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.202 0.798 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -26.130 0.021 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.234 4.234 3 C -0.011 4.011 4 C -0.265 4.265 5 C 0.365 3.635 6 O -0.465 6.465 7 N -0.364 5.364 8 C 0.004 3.996 9 C -0.140 4.140 10 C -0.051 4.051 11 C -0.568 4.568 12 H 0.056 0.944 13 C -0.194 4.194 14 N -0.593 5.593 15 Si 0.771 3.229 16 H -0.193 1.193 17 H -0.213 1.213 18 H -0.168 1.168 19 C 0.082 3.918 20 N -0.193 5.193 21 C -0.088 4.088 22 C 0.309 3.691 23 O -0.461 6.461 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.179 0.821 28 H 0.250 0.750 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.219 0.781 37 H 0.148 0.852 38 H 0.104 0.896 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.682 -26.707 0.021 26.841 hybrid contribution -0.017 0.784 -0.022 0.784 sum 2.665 -25.924 -0.001 26.060 Atomic orbital electron populations 1.20446 0.87835 1.03755 1.02250 1.20790 0.98830 0.91307 1.12433 1.21596 0.91889 0.99249 0.88381 1.19289 0.94015 0.92546 1.20639 1.17841 0.86613 0.83592 0.75466 1.90769 1.14805 1.88022 1.52951 1.45821 1.11234 1.05082 1.74310 1.21336 0.94389 0.82025 1.01806 1.21499 0.97807 0.92479 1.02259 1.19470 0.95786 0.92908 0.96895 1.21496 0.93980 0.91268 1.50035 0.94433 1.26002 1.03128 0.95942 0.94298 1.70059 1.37111 0.99282 1.52856 0.85694 0.79913 0.78128 0.79149 1.19293 1.21318 1.16826 1.22639 0.99720 0.83457 0.85943 1.45311 1.08117 1.09238 1.56588 1.22567 0.98954 0.82295 1.04986 1.17385 0.81279 0.91291 0.79131 1.90904 1.67062 1.34365 1.53774 0.88965 0.91887 0.91876 0.82065 0.75038 0.91993 0.91932 0.91646 0.91668 0.95990 0.96105 0.92585 0.78107 0.85243 0.89648 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.62 71.23 0.69 -0.71 16 2 C -0.23 -4.31 5.89 -19.77 -0.12 -4.43 16 3 C 0.01 0.16 9.18 22.57 0.21 0.37 16 4 C -0.26 -4.58 5.88 -20.08 -0.12 -4.69 16 5 C 0.58 13.56 7.76 86.67 0.67 14.23 16 6 O -0.58 -17.51 16.32 -4.04 -0.07 -17.58 16 7 N -0.71 -16.14 5.51 -466.35 -2.57 -18.71 16 8 C 0.13 3.65 5.67 86.38 0.49 4.14 16 9 C -0.10 -3.44 5.27 30.59 0.16 -3.28 16 10 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 11 C -0.53 -29.33 9.66 25.60 0.25 -29.08 16 12 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 13 C 0.00 0.17 5.47 84.66 0.46 0.63 16 14 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 15 Si 0.95 43.40 27.47 68.60 1.88 45.28 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 18 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 19 C 0.22 3.13 9.88 84.21 0.83 3.96 16 20 N -0.49 -7.54 2.95 -673.09 -1.99 -9.53 16 21 C 0.05 0.46 10.01 127.77 1.28 1.73 16 22 C 0.51 11.05 7.39 84.90 0.63 11.68 16 23 O -0.58 -16.26 16.47 -5.20 -0.09 -16.35 16 24 H 0.09 1.05 7.88 -2.39 -0.02 1.03 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.16 1.73 6.37 -2.91 -0.02 1.71 16 28 H 0.41 7.07 6.54 -92.71 -0.61 6.46 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 34 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.20 2.01 7.34 -2.91 -0.02 1.98 16 37 H 0.13 0.20 7.70 -2.39 -0.02 0.18 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -76.34 331.19 3.43 -72.91 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.40 Total: 8.42 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.55 Total: -5.88 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -4.26 Total: -86.81 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.15 Total: -33.93 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Total: -76.34 3.43 -72.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195125618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.876 kcal (2) G-P(sol) polarization free energy of solvation -76.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds