Wall clock time and date at job start Tue Mar 31 2020 00:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35496 * 117.00345 * 2 1 4 4 C 1.39178 * 119.52491 * 179.72671 * 3 2 1 5 5 C 1.37957 * 119.25899 * 179.74920 * 4 3 2 6 6 C 1.50699 * 120.81704 * 180.23840 * 5 4 3 7 7 C 1.40284 * 118.35947 * 0.51665 * 5 4 3 8 8 C 1.47610 * 120.49904 * 179.72528 * 7 5 4 9 9 O 1.21588 * 119.99943 * 353.92823 * 8 7 5 10 10 N 1.34770 * 120.00240 * 173.92532 * 8 7 5 11 11 C 1.46499 * 120.00478 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47496 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47195 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47180 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00164 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00131 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99976 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00265 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47406 * 89.99599 * 18 16 14 20 20 H 1.48501 * 109.47413 * 209.99973 * 18 16 14 21 21 H 1.48500 * 109.46857 * 329.99640 * 18 16 14 22 22 C 1.39522 * 119.00013 * 359.74440 * 7 5 4 23 23 N 1.31668 * 120.63298 * 359.97438 * 22 7 5 24 24 H 1.09009 * 109.46575 * 59.99857 * 1 2 3 25 25 H 1.08998 * 109.47583 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47133 * 300.00141 * 1 2 3 27 27 H 1.07998 * 120.36914 * 0.02562 * 4 3 2 28 28 H 1.09005 * 109.46839 * 263.92670 * 6 5 4 29 29 H 1.08996 * 109.47550 * 23.92629 * 6 5 4 30 30 H 1.09001 * 109.46764 * 143.93354 * 6 5 4 31 31 H 0.97004 * 120.00005 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.47009 * 300.00307 * 11 10 8 33 33 H 1.09004 * 109.46980 * 60.00015 * 11 10 8 34 34 H 1.09006 * 109.47271 * 300.00182 * 12 11 10 35 35 H 1.09004 * 109.46965 * 60.00041 * 12 11 10 36 36 H 1.08993 * 109.47465 * 300.00164 * 13 12 11 37 37 H 1.08999 * 109.46995 * 60.00740 * 13 12 11 38 38 H 0.96995 * 120.00017 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.68471 * 179.97438 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4346 1.2685 0.0058 5 6 4.0553 2.5005 0.0005 6 6 5.5584 2.6077 0.0011 7 6 3.2526 3.6510 0.0005 8 6 3.8671 4.9932 0.0011 9 8 5.0721 5.1100 0.1129 10 7 3.0924 6.0890 -0.1224 11 6 3.7022 7.4211 -0.1224 12 6 2.6105 8.4819 -0.2757 13 6 3.2474 9.8730 -0.2750 14 6 2.1720 10.9179 -0.4266 15 1 1.1377 10.6196 -0.5142 16 6 2.5086 12.2547 -0.4535 17 7 3.7681 12.6180 -0.3464 18 14 1.1756 13.5499 -0.6407 19 1 0.6871 13.9551 0.7018 20 1 1.7313 14.7342 -1.3435 21 1 0.0487 12.9900 -1.4292 22 6 1.8648 3.5076 0.0004 23 7 1.3139 2.3117 -0.0002 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 4.0210 0.3616 0.0098 28 1 5.9123 2.7468 1.0226 29 1 5.9880 1.6947 -0.4111 30 1 5.8622 3.4593 -0.6077 31 1 2.1310 5.9958 -0.2120 32 1 4.2325 7.5779 0.8169 33 1 4.4037 7.4995 -0.9531 34 1 2.0806 8.3249 -1.2152 35 1 1.9087 8.4036 0.5547 36 1 3.7769 10.0298 0.6646 37 1 3.9493 9.9516 -1.1052 38 1 4.0048 13.5584 -0.3649 39 1 1.2363 4.3859 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199711477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:04 Heat of formation + Delta-G solvation = -54.615726 kcal Electronic energy + Delta-G solvation = -20505.021306 eV Core-core repulsion = 17219.608738 eV Total energy + Delta-G solvation = -3285.412568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.17795 -39.55162 -37.93923 -35.62651 -34.00735 -33.33533 -31.79741 -30.71479 -28.63617 -27.16604 -26.63243 -24.51961 -23.20546 -21.99456 -20.88950 -20.25262 -18.24647 -17.71526 -17.45849 -16.41144 -16.35840 -15.48582 -15.39394 -15.04580 -14.60776 -14.44993 -14.31951 -14.05787 -13.46323 -13.22245 -12.96659 -12.79567 -12.37514 -12.26179 -12.20098 -11.85061 -11.75354 -11.48101 -10.91765 -10.75483 -10.61280 -10.24481 -9.89691 -9.85899 -9.70163 -9.36037 -9.13499 -8.98290 -8.72020 -8.38679 -6.03353 -4.06524 0.49686 0.88564 2.68924 2.81104 3.27560 3.29970 3.36574 3.39452 3.60205 3.87306 4.41422 4.43130 4.56508 4.67972 4.83174 4.94934 4.97713 5.21669 5.26754 5.32563 5.39737 5.43554 5.59992 5.65439 5.74430 5.80605 6.05591 6.12752 6.22916 6.45569 6.56587 6.78779 6.82058 6.97165 7.42448 7.61372 7.61880 7.73892 7.95248 8.28179 8.36658 9.00163 9.57855 11.07941 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.002831 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.078218 B = 9887.654224 C =10834.467217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.341 3.659 4 C -0.203 4.203 5 C 0.051 3.949 6 C -0.123 4.123 7 C -0.227 4.227 8 C 0.561 3.439 9 O -0.535 6.535 10 N -0.721 5.721 11 C 0.117 3.883 12 C -0.122 4.122 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.182 3.818 23 N -0.548 5.548 24 H 0.061 0.939 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.147 0.853 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.396 0.604 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 -25.000 0.614 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.212 6.212 3 C 0.163 3.837 4 C -0.224 4.224 5 C 0.044 3.956 6 C -0.178 4.178 7 C -0.233 4.233 8 C 0.348 3.652 9 O -0.414 6.414 10 N -0.371 5.371 11 C -0.005 4.005 12 C -0.160 4.160 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.024 3.976 23 N -0.272 5.272 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.165 0.835 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.231 0.769 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.547 -25.103 0.692 25.362 hybrid contribution -0.716 0.941 -0.111 1.188 sum -4.263 -24.162 0.581 24.542 Atomic orbital electron populations 1.22920 0.76821 1.03126 1.02817 1.86205 1.23291 1.24545 1.87117 1.20041 0.89368 0.84712 0.89608 1.20913 0.91717 0.99047 1.10724 1.20261 0.97521 0.90290 0.87557 1.21118 0.88396 1.03867 1.04466 1.20776 0.94786 0.94781 1.12948 1.17858 0.86669 0.83660 0.77009 1.90735 1.13937 1.86664 1.50068 1.46146 1.10573 1.06765 1.73661 1.21690 0.97172 0.79459 1.02193 1.21904 0.96804 0.96428 1.00854 1.19026 0.96173 0.88489 0.97680 1.21202 0.93487 0.91114 1.50300 0.92633 1.25029 0.95369 0.98782 0.95284 1.69964 1.16343 1.16649 1.50328 0.86581 0.81919 0.81228 0.78187 1.20656 1.21206 1.19880 1.22636 0.91549 0.93970 0.89453 1.67310 1.40458 0.98582 1.20841 0.92008 0.88480 0.92016 0.83523 0.89654 0.91711 0.87838 0.76917 0.91498 0.91521 0.92654 0.92659 0.96244 0.96242 0.92910 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.37 101.05 1.05 1.32 16 2 O -0.31 -3.02 10.46 -18.18 -0.19 -3.21 16 3 C 0.34 3.76 7.49 -16.96 -0.13 3.63 16 4 C -0.20 -2.07 9.70 -39.34 -0.38 -2.46 16 5 C 0.05 0.58 5.95 -103.96 -0.62 -0.04 16 6 C -0.12 -1.28 8.84 36.01 0.32 -0.96 16 7 C -0.23 -2.76 5.89 -104.83 -0.62 -3.38 16 8 C 0.56 8.12 7.72 -12.44 -0.10 8.03 16 9 O -0.54 -9.23 13.50 5.29 0.07 -9.16 16 10 N -0.72 -9.93 5.51 -61.33 -0.34 -10.27 16 11 C 0.12 1.98 5.67 -4.05 -0.02 1.95 16 12 C -0.12 -2.31 5.27 -26.74 -0.14 -2.45 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 18 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.18 1.95 10.69 -17.14 -0.18 1.77 16 23 N -0.55 -6.19 9.18 -12.96 -0.12 -6.31 16 24 H 0.06 0.44 8.10 -51.92 -0.42 0.02 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 30 H 0.10 1.30 5.96 -51.93 -0.31 0.99 16 31 H 0.40 4.34 6.56 -40.82 -0.27 4.08 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.16 1.34 6.46 -52.48 -0.34 1.01 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -32.34 332.40 -6.74 -39.08 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.52 Total: -0.20 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.37 Total: -5.35 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.28 Total: -42.47 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.12 Total: -12.37 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.34 -6.74 -39.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199711477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.532 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds