Wall clock time and date at job start Tue Mar 31 2020 00:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35496 * 117.00345 * 2 1 4 4 C 1.39178 * 119.52491 * 179.72671 * 3 2 1 5 5 C 1.37957 * 119.25899 * 179.74920 * 4 3 2 6 6 C 1.50699 * 120.81704 * 180.23840 * 5 4 3 7 7 C 1.40284 * 118.35947 * 0.51665 * 5 4 3 8 8 C 1.47610 * 120.49904 * 179.72528 * 7 5 4 9 9 O 1.21588 * 119.99943 * 353.92823 * 8 7 5 10 10 N 1.34770 * 120.00240 * 173.92532 * 8 7 5 11 11 C 1.46499 * 120.00478 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47496 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47195 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47180 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00164 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00131 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99976 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00265 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47406 * 89.99599 * 18 16 14 20 20 H 1.48501 * 109.47413 * 209.99973 * 18 16 14 21 21 H 1.48500 * 109.46857 * 329.99640 * 18 16 14 22 22 C 1.39522 * 119.00013 * 359.74440 * 7 5 4 23 23 N 1.31668 * 120.63298 * 359.97438 * 22 7 5 24 24 H 1.09009 * 109.46575 * 59.99857 * 1 2 3 25 25 H 1.08998 * 109.47583 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47133 * 300.00141 * 1 2 3 27 27 H 1.07998 * 120.36914 * 0.02562 * 4 3 2 28 28 H 1.09005 * 109.46839 * 263.92670 * 6 5 4 29 29 H 1.08996 * 109.47550 * 23.92629 * 6 5 4 30 30 H 1.09001 * 109.46764 * 143.93354 * 6 5 4 31 31 H 0.97004 * 120.00005 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.47009 * 300.00307 * 11 10 8 33 33 H 1.09004 * 109.46980 * 60.00015 * 11 10 8 34 34 H 1.09006 * 109.47271 * 300.00182 * 12 11 10 35 35 H 1.09004 * 109.46965 * 60.00041 * 12 11 10 36 36 H 1.08993 * 109.47465 * 300.00164 * 13 12 11 37 37 H 1.08999 * 109.46995 * 60.00740 * 13 12 11 38 38 H 0.96995 * 120.00017 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.68471 * 179.97438 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4346 1.2685 0.0058 5 6 4.0553 2.5005 0.0005 6 6 5.5584 2.6077 0.0011 7 6 3.2526 3.6510 0.0005 8 6 3.8671 4.9932 0.0011 9 8 5.0721 5.1100 0.1129 10 7 3.0924 6.0890 -0.1224 11 6 3.7022 7.4211 -0.1224 12 6 2.6105 8.4819 -0.2757 13 6 3.2474 9.8730 -0.2750 14 6 2.1720 10.9179 -0.4266 15 1 1.1377 10.6196 -0.5142 16 6 2.5086 12.2547 -0.4535 17 7 3.7681 12.6180 -0.3464 18 14 1.1756 13.5499 -0.6407 19 1 0.6871 13.9551 0.7018 20 1 1.7313 14.7342 -1.3435 21 1 0.0487 12.9900 -1.4292 22 6 1.8648 3.5076 0.0004 23 7 1.3139 2.3117 -0.0002 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 4.0210 0.3616 0.0098 28 1 5.9123 2.7468 1.0226 29 1 5.9880 1.6947 -0.4111 30 1 5.8622 3.4593 -0.6077 31 1 2.1310 5.9958 -0.2120 32 1 4.2325 7.5779 0.8169 33 1 4.4037 7.4995 -0.9531 34 1 2.0806 8.3249 -1.2152 35 1 1.9087 8.4036 0.5547 36 1 3.7769 10.0298 0.6646 37 1 3.9493 9.9516 -1.1052 38 1 4.0048 13.5584 -0.3649 39 1 1.2363 4.3859 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199711477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:02 Heat of formation + Delta-G solvation = -77.426435 kcal Electronic energy + Delta-G solvation = -20506.010453 eV Core-core repulsion = 17219.608738 eV Total energy + Delta-G solvation = -3286.401715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04637 -40.58603 -38.79668 -37.04666 -35.36632 -34.69294 -33.30971 -31.87591 -29.58980 -28.28942 -27.81250 -25.63671 -24.71633 -22.95691 -22.28611 -21.63488 -19.02390 -18.81269 -18.55661 -18.16827 -17.16218 -16.75974 -16.67215 -16.38555 -15.90834 -15.60166 -15.33342 -15.06937 -14.53005 -14.31158 -14.07275 -13.78233 -13.77105 -13.62723 -13.45842 -13.14051 -12.78475 -12.73866 -12.52575 -12.36411 -12.19297 -11.65474 -11.55576 -11.23665 -11.07408 -10.71710 -10.56818 -10.54139 -10.12922 -9.65082 -8.18554 -6.29720 -0.39068 0.06681 1.42684 1.43723 1.54656 1.77451 1.97336 2.12994 2.43389 2.68718 3.10335 3.15445 3.60516 3.63967 3.88731 3.98052 4.19364 4.24447 4.39056 4.44086 4.46743 4.57155 4.63591 4.66830 4.75928 4.76925 4.96682 4.96963 4.99728 5.19200 5.25721 5.36347 5.49259 5.54650 5.73034 5.85982 6.07116 6.23633 6.50834 6.60858 6.88128 7.17487 7.39916 8.93537 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.002831 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.078218 B = 9887.654224 C =10834.467217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.335 3.665 4 C -0.200 4.200 5 C 0.044 3.956 6 C -0.118 4.118 7 C -0.242 4.242 8 C 0.562 3.438 9 O -0.568 6.568 10 N -0.711 5.711 11 C 0.132 3.868 12 C -0.103 4.103 13 C 0.023 3.977 14 C -0.540 4.540 15 H 0.067 0.933 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.260 1.260 22 C 0.188 3.812 23 N -0.556 5.556 24 H 0.060 0.940 25 H 0.125 0.875 26 H 0.059 0.941 27 H 0.170 0.830 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.412 0.588 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.069 0.931 36 H -0.007 1.007 37 H -0.007 1.007 38 H 0.263 0.737 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 -26.488 0.475 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.217 6.217 3 C 0.157 3.843 4 C -0.221 4.221 5 C 0.037 3.963 6 C -0.174 4.174 7 C -0.248 4.248 8 C 0.350 3.650 9 O -0.449 6.449 10 N -0.363 5.363 11 C 0.008 3.992 12 C -0.141 4.141 13 C -0.014 4.014 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.790 3.210 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.184 1.184 22 C 0.030 3.970 23 N -0.281 5.281 24 H 0.078 0.922 25 H 0.143 0.857 26 H 0.078 0.922 27 H 0.187 0.813 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.250 0.750 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.740 -26.628 0.551 27.245 hybrid contribution -0.054 1.305 -0.063 1.308 sum -5.794 -25.322 0.488 25.981 Atomic orbital electron populations 1.23155 0.75337 1.05009 1.02632 1.86209 1.24777 1.23946 1.86727 1.20312 0.89878 0.85056 0.89054 1.21099 0.91722 0.99356 1.09890 1.20421 0.97844 0.90569 0.87481 1.21054 0.88243 1.04157 1.03971 1.20628 0.95581 0.93537 1.15063 1.18196 0.86256 0.84457 0.76049 1.90730 1.15454 1.87209 1.51537 1.45883 1.11399 1.05396 1.73584 1.21266 0.96262 0.80652 1.01015 1.21613 0.97008 0.93374 1.02130 1.18941 0.95425 0.91929 0.95135 1.21696 0.94477 0.91980 1.49661 0.91520 1.26012 0.97718 1.01451 0.94935 1.70109 1.18683 1.17197 1.51584 0.85432 0.79037 0.78012 0.78475 1.19871 1.21123 1.18408 1.22943 0.91145 0.94667 0.88260 1.67377 1.40612 0.98774 1.21299 0.92156 0.85667 0.92183 0.81278 0.89953 0.89050 0.90232 0.75022 0.92809 0.92841 0.91310 0.91243 0.98887 0.98897 0.92844 0.79566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.37 113.37 1.18 1.57 16 2 O -0.31 -5.46 10.46 -87.97 -0.92 -6.38 16 3 C 0.33 6.72 7.49 84.83 0.64 7.35 16 4 C -0.20 -3.69 9.70 22.43 0.22 -3.47 16 5 C 0.04 0.95 5.95 -19.43 -0.12 0.84 16 6 C -0.12 -2.40 8.84 71.24 0.63 -1.77 16 7 C -0.24 -5.65 5.89 -20.00 -0.12 -5.76 16 8 C 0.56 16.10 7.72 86.72 0.67 16.77 16 9 O -0.57 -20.00 13.50 -3.99 -0.05 -20.05 16 10 N -0.71 -18.94 5.51 -466.20 -2.57 -21.51 16 11 C 0.13 4.47 5.67 86.38 0.49 4.96 16 12 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 13 C 0.02 1.20 4.97 29.85 0.15 1.34 16 14 C -0.54 -29.80 9.11 25.60 0.23 -29.56 16 15 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 16 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 17 N -0.94 -56.85 13.29 21.45 0.28 -56.57 16 18 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 22 C 0.19 3.69 10.69 85.03 0.91 4.60 16 23 N -0.56 -11.49 9.18 -307.82 -2.82 -14.31 16 24 H 0.06 0.74 8.10 -2.38 -0.02 0.72 16 25 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 27 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 28 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.09 1.30 8.06 -2.39 -0.02 1.28 16 30 H 0.08 2.04 5.96 -2.39 -0.01 2.03 16 31 H 0.41 8.21 6.56 -92.71 -0.61 7.60 16 32 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 36 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.19 2.59 6.46 -2.91 -0.02 2.57 16 Total: -1.00 -70.29 332.40 1.89 -68.39 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.45 Total: 11.47 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.50 Total: -6.57 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -5.11 Total: -92.39 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.97 Total: -26.44 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -70.29 1.89 -68.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199711477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.032 kcal (2) G-P(sol) polarization free energy of solvation -70.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds