Wall clock time and date at job start Mon Mar 30 2020 23:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38257 * 119.99970 * 2 1 4 4 C 1.38215 * 120.00056 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99742 * 0.28752 * 4 3 2 6 6 N 1.48027 * 119.99970 * 179.72286 * 5 4 3 7 7 O 1.21799 * 119.99903 * 37.25736 * 6 5 4 8 8 O 1.21799 * 120.00022 * 217.25633 * 6 5 4 9 9 C 1.38210 * 120.00296 * 359.52332 * 5 4 3 10 10 C 1.50698 * 120.00382 * 180.21899 * 9 5 4 11 11 C 1.38217 * 119.99919 * 180.02562 * 2 1 3 12 12 C 1.50693 * 120.00119 * 0.02562 * 11 2 1 13 13 N 1.46899 * 109.47499 * 89.99543 * 12 11 2 14 14 C 1.46898 * 111.00234 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.46927 * 324.99863 * 14 13 12 16 16 C 1.52992 * 109.47253 * 84.99856 * 14 13 12 17 17 C 1.50706 * 109.47128 * 205.00132 * 14 13 12 18 18 H 1.08000 * 120.00140 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99817 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99703 * 179.97438 * 19 17 14 21 21 Si 1.86794 * 120.00209 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47233 * 89.99638 * 21 19 17 23 23 H 1.48499 * 109.47356 * 210.00090 * 21 19 17 24 24 H 1.48501 * 109.47209 * 330.00133 * 21 19 17 25 25 H 1.09000 * 109.46955 * 89.99722 * 1 2 3 26 26 H 1.09002 * 109.47067 * 210.00312 * 1 2 3 27 27 H 1.09000 * 109.47320 * 329.99765 * 1 2 3 28 28 H 1.07995 * 120.00433 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.00333 * 180.02562 * 4 3 2 30 30 H 1.09009 * 109.46878 * 267.88820 * 10 9 5 31 31 H 1.08999 * 109.47108 * 27.88615 * 10 9 5 32 32 H 1.08999 * 109.47645 * 147.89106 * 10 9 5 33 33 H 1.09000 * 109.47009 * 209.99464 * 12 11 2 34 34 H 1.09004 * 109.46828 * 329.99455 * 12 11 2 35 35 H 1.00903 * 111.00113 * 303.95874 * 13 12 11 36 36 H 1.09000 * 109.47149 * 60.00143 * 16 14 13 37 37 H 1.09003 * 109.47256 * 179.97438 * 16 14 13 38 38 H 1.08999 * 109.47596 * 300.00392 * 16 14 13 39 39 H 0.96991 * 119.99598 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0000 -0.0049 6 7 5.7519 0.0000 -0.0106 7 8 6.3633 0.8380 0.6277 8 8 6.3585 -0.8380 -0.6534 9 6 3.5807 -1.1969 -0.0010 10 6 4.3341 -2.5020 -0.0020 11 6 2.1980 -1.1970 -0.0005 12 6 1.4446 -2.5020 -0.0017 13 7 1.2001 -2.9252 -1.3870 14 6 0.4654 -4.1966 -1.4273 15 1 0.7824 -4.8259 -0.5958 16 6 -1.0355 -3.9220 -1.3157 17 6 0.7518 -4.9013 -2.7283 18 1 1.4132 -4.4497 -3.4529 19 6 0.1695 -6.1227 -2.9935 20 7 0.4191 -6.7374 -4.1290 21 14 -0.9737 -6.9042 -1.7399 22 1 -2.3678 -6.4628 -1.9985 23 1 -0.8940 -8.3828 -1.8513 24 1 -0.5684 -6.4882 -0.3732 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1326 0.0010 30 1 4.4794 -2.8369 -1.0291 31 1 5.3041 -2.3619 0.4751 32 1 3.7639 -3.2513 0.5472 33 1 2.0335 -3.2620 0.5118 34 1 0.4920 -2.3720 0.5120 35 1 0.7114 -2.2089 -1.9030 36 1 -1.3526 -3.2927 -2.1473 37 1 -1.5808 -4.8654 -1.3461 38 1 -1.2428 -3.4123 -0.3748 39 1 0.0092 -7.5964 -4.3157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203523035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:18 Heat of formation + Delta-G solvation = 24.422621 kcal Electronic energy + Delta-G solvation = -21781.180169 eV Core-core repulsion = 18499.194961 eV Total energy + Delta-G solvation = -3281.985208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.19908 -40.11840 -36.57505 -36.48167 -34.07339 -33.56564 -31.96719 -29.56304 -28.71610 -27.48133 -25.38186 -24.93588 -24.68569 -21.29110 -21.23108 -20.38439 -18.67292 -18.63794 -17.67278 -16.76527 -16.17267 -15.55164 -15.26035 -14.89121 -14.38500 -13.94858 -13.66689 -13.45503 -13.24319 -13.00841 -12.80891 -12.55491 -12.30495 -12.09863 -12.02287 -12.00358 -11.68506 -11.50401 -11.12782 -11.08625 -10.98287 -10.82229 -10.52295 -10.22674 -9.66086 -9.29451 -9.23386 -9.03487 -8.64081 -7.61690 -6.11246 -4.09652 0.00624 0.87507 1.18330 1.46241 3.12104 3.18260 3.27169 3.32252 4.25306 4.31103 4.32765 4.41789 4.66421 4.68479 4.99909 5.09027 5.18328 5.20239 5.27633 5.33367 5.47210 5.56181 5.58040 5.65175 5.74963 5.91173 5.99281 6.04287 6.14622 6.18387 6.20808 6.32011 6.36468 6.56041 6.59320 6.96550 7.57242 7.68618 7.74712 8.10510 8.59218 9.00331 9.50238 11.02209 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.004631 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.898318 B = 6044.463368 C = 6875.238845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.030 4.030 3 C -0.126 4.126 4 C -0.060 4.060 5 C -0.052 4.052 6 N 0.029 4.971 7 O -0.173 6.173 8 O -0.145 6.145 9 C 0.008 3.992 10 C -0.127 4.127 11 C -0.073 4.073 12 C 0.087 3.913 13 N -0.661 5.661 14 C 0.184 3.816 15 H 0.035 0.965 16 C -0.184 4.184 17 C -0.500 4.500 18 H 0.082 0.918 19 C 0.069 3.931 20 N -0.898 5.898 21 Si 0.885 3.115 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.270 1.270 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.332 0.668 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.025 0.975 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 15.000 11.015 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.030 4.030 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.134 4.134 6 N 0.549 4.451 7 O -0.386 6.386 8 O -0.365 6.365 9 C 0.006 3.994 10 C -0.183 4.183 11 C -0.074 4.074 12 C -0.041 4.041 13 N -0.291 5.291 14 C 0.075 3.925 15 H 0.053 0.947 16 C -0.242 4.242 17 C -0.539 4.539 18 H 0.100 0.900 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.223 1.223 24 H -0.196 1.196 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.160 0.840 29 H 0.161 0.839 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.150 0.850 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.518 14.534 10.855 18.148 hybrid contribution -1.218 -0.104 0.807 1.465 sum -0.700 14.431 11.662 18.567 Atomic orbital electron populations 1.21036 0.89968 1.03746 1.03721 1.20210 0.97126 0.92299 0.93402 1.20927 0.92308 0.98489 1.02783 1.20805 0.94735 0.96145 0.96209 1.20834 0.78707 0.96641 1.17246 1.43613 1.03713 0.99391 0.98356 1.94513 1.69221 1.33252 1.41618 1.94558 1.69588 1.32275 1.40119 1.19617 0.93617 0.93944 0.92204 1.21116 0.98913 0.92702 1.05525 1.19712 0.91538 0.95940 1.00218 1.21065 0.97457 0.91874 0.93748 1.60712 1.53842 1.06018 1.08522 1.19678 0.86774 0.87158 0.98892 0.94708 1.22875 1.01764 1.00753 0.98858 1.20932 1.28397 1.03273 1.01256 0.89957 1.24936 0.96437 0.96865 0.95057 1.69876 1.44342 1.16194 1.23242 0.86909 0.81237 0.77822 0.82418 1.20795 1.22339 1.19552 0.89657 0.90208 0.90816 0.83979 0.83938 0.87643 0.91490 0.89853 0.89789 0.94184 0.85048 0.92638 0.93467 0.95566 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.60 36.00 0.35 -0.76 16 2 C -0.03 -0.32 5.88 -104.62 -0.62 -0.93 16 3 C -0.13 -1.20 9.70 -39.58 -0.38 -1.59 16 4 C -0.06 -0.66 9.66 -39.58 -0.38 -1.04 16 5 C -0.05 -0.71 6.48 -79.94 -0.52 -1.23 16 6 N 0.03 0.44 4.11 33.96 0.14 0.58 16 7 O -0.17 -2.65 18.94 -29.46 -0.56 -3.20 16 8 O -0.15 -2.37 16.61 -29.46 -0.49 -2.86 16 9 C 0.01 0.11 5.87 -104.62 -0.61 -0.50 16 10 C -0.13 -1.78 8.46 36.00 0.30 -1.48 16 11 C -0.07 -0.95 5.39 -104.62 -0.56 -1.52 16 12 C 0.09 1.26 4.79 -4.98 -0.02 1.24 16 13 N -0.66 -11.92 6.22 -109.23 -0.68 -12.60 16 14 C 0.18 3.95 2.16 -68.87 -0.15 3.80 16 15 H 0.04 0.78 6.85 -51.93 -0.36 0.43 16 16 C -0.18 -3.57 8.64 37.15 0.32 -3.25 16 17 C -0.50 -13.41 9.42 -34.44 -0.32 -13.74 16 18 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 19 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 20 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 21 Si 0.89 21.02 24.38 -169.99 -4.14 16.87 16 22 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 23 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.27 -6.08 6.53 56.52 0.37 -5.71 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.73 5.95 -51.93 -0.31 0.42 16 27 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.14 1.32 8.01 -52.49 -0.42 0.90 16 30 H 0.11 1.63 8.14 -51.92 -0.42 1.20 16 31 H 0.07 0.92 6.39 -51.93 -0.33 0.59 16 32 H 0.08 1.11 6.05 -51.93 -0.31 0.79 16 33 H 0.08 1.24 5.90 -51.93 -0.31 0.93 16 34 H 0.04 0.53 5.24 -51.93 -0.27 0.26 16 35 H 0.33 5.67 8.46 -39.29 -0.33 5.33 16 36 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 37 H 0.05 0.99 3.28 -51.93 -0.17 0.82 16 38 H 0.03 0.42 7.45 -51.93 -0.39 0.03 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -30.16 316.74 -7.80 -37.96 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.91 Total: 3.76 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -2.70 Total: -19.19 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.23 Total: -38.11 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -1.05 Total: -6.06 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.87 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.16 -7.80 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203523035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.379 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds