Wall clock time and date at job start Mon Mar 30 2020 23:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38257 * 119.99970 * 2 1 4 4 C 1.38215 * 120.00056 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99742 * 0.28752 * 4 3 2 6 6 N 1.48027 * 119.99970 * 179.72286 * 5 4 3 7 7 O 1.21799 * 119.99903 * 37.25736 * 6 5 4 8 8 O 1.21799 * 120.00022 * 217.25633 * 6 5 4 9 9 C 1.38210 * 120.00296 * 359.52332 * 5 4 3 10 10 C 1.50698 * 120.00382 * 180.21899 * 9 5 4 11 11 C 1.38217 * 119.99919 * 180.02562 * 2 1 3 12 12 C 1.50693 * 120.00119 * 0.02562 * 11 2 1 13 13 N 1.46899 * 109.47499 * 89.99543 * 12 11 2 14 14 C 1.46898 * 111.00234 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.46927 * 324.99863 * 14 13 12 16 16 C 1.52992 * 109.47253 * 84.99856 * 14 13 12 17 17 C 1.50706 * 109.47128 * 205.00132 * 14 13 12 18 18 H 1.08000 * 120.00140 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99817 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99703 * 179.97438 * 19 17 14 21 21 Si 1.86794 * 120.00209 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47233 * 89.99638 * 21 19 17 23 23 H 1.48499 * 109.47356 * 210.00090 * 21 19 17 24 24 H 1.48501 * 109.47209 * 330.00133 * 21 19 17 25 25 H 1.09000 * 109.46955 * 89.99722 * 1 2 3 26 26 H 1.09002 * 109.47067 * 210.00312 * 1 2 3 27 27 H 1.09000 * 109.47320 * 329.99765 * 1 2 3 28 28 H 1.07995 * 120.00433 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.00333 * 180.02562 * 4 3 2 30 30 H 1.09009 * 109.46878 * 267.88820 * 10 9 5 31 31 H 1.08999 * 109.47108 * 27.88615 * 10 9 5 32 32 H 1.08999 * 109.47645 * 147.89106 * 10 9 5 33 33 H 1.09000 * 109.47009 * 209.99464 * 12 11 2 34 34 H 1.09004 * 109.46828 * 329.99455 * 12 11 2 35 35 H 1.00903 * 111.00113 * 303.95874 * 13 12 11 36 36 H 1.09000 * 109.47149 * 60.00143 * 16 14 13 37 37 H 1.09003 * 109.47256 * 179.97438 * 16 14 13 38 38 H 1.08999 * 109.47596 * 300.00392 * 16 14 13 39 39 H 0.96991 * 119.99598 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0000 -0.0049 6 7 5.7519 0.0000 -0.0106 7 8 6.3633 0.8380 0.6277 8 8 6.3585 -0.8380 -0.6534 9 6 3.5807 -1.1969 -0.0010 10 6 4.3341 -2.5020 -0.0020 11 6 2.1980 -1.1970 -0.0005 12 6 1.4446 -2.5020 -0.0017 13 7 1.2001 -2.9252 -1.3870 14 6 0.4654 -4.1966 -1.4273 15 1 0.7824 -4.8259 -0.5958 16 6 -1.0355 -3.9220 -1.3157 17 6 0.7518 -4.9013 -2.7283 18 1 1.4132 -4.4497 -3.4529 19 6 0.1695 -6.1227 -2.9935 20 7 0.4191 -6.7374 -4.1290 21 14 -0.9737 -6.9042 -1.7399 22 1 -2.3678 -6.4628 -1.9985 23 1 -0.8940 -8.3828 -1.8513 24 1 -0.5684 -6.4882 -0.3732 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1326 0.0010 30 1 4.4794 -2.8369 -1.0291 31 1 5.3041 -2.3619 0.4751 32 1 3.7639 -3.2513 0.5472 33 1 2.0335 -3.2620 0.5118 34 1 0.4920 -2.3720 0.5120 35 1 0.7114 -2.2089 -1.9030 36 1 -1.3526 -3.2927 -2.1473 37 1 -1.5808 -4.8654 -1.3461 38 1 -1.2428 -3.4123 -0.3748 39 1 0.0092 -7.5964 -4.3157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203523035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:18 Heat of formation + Delta-G solvation = 5.224891 kcal Electronic energy + Delta-G solvation = -21782.012645 eV Core-core repulsion = 18499.194961 eV Total energy + Delta-G solvation = -3282.817684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.32912 -41.09488 -37.99753 -37.70096 -35.09325 -34.91706 -33.66400 -30.97394 -29.65549 -28.56982 -27.13507 -26.10839 -25.85388 -22.34961 -22.23989 -22.06977 -19.81131 -19.73962 -18.85600 -18.62601 -17.20604 -16.99644 -16.36682 -16.20562 -15.74256 -14.98823 -14.96005 -14.64038 -14.49930 -14.21411 -14.00852 -13.90795 -13.54836 -13.49605 -13.08330 -12.98081 -12.92538 -12.73800 -12.57221 -12.48247 -12.19567 -12.03510 -11.98741 -11.86518 -11.46740 -11.18212 -10.74290 -10.16190 -10.01762 -9.02795 -8.25083 -6.27974 -1.07918 -0.04136 0.13203 0.39660 1.30885 1.37101 1.47034 2.20573 2.33616 3.09658 3.27578 3.38862 3.56703 3.61559 3.81623 3.90169 4.07077 4.29290 4.34486 4.44714 4.48529 4.51683 4.58962 4.64829 4.69571 4.73943 4.79270 4.83717 4.97648 5.01865 5.07621 5.12951 5.25728 5.35257 5.42634 5.60071 5.68229 5.99362 6.47300 6.66613 6.70678 6.80700 7.37184 8.92593 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.004631 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.898318 B = 6044.463368 C = 6875.238845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.020 4.020 3 C -0.112 4.112 4 C -0.055 4.055 5 C -0.072 4.072 6 N 0.031 4.969 7 O -0.161 6.161 8 O -0.191 6.191 9 C -0.010 4.010 10 C -0.121 4.121 11 C -0.087 4.087 12 C 0.092 3.908 13 N -0.676 5.676 14 C 0.189 3.811 15 H 0.031 0.969 16 C -0.178 4.178 17 C -0.502 4.502 18 H 0.032 0.968 19 C 0.007 3.993 20 N -0.954 5.954 21 Si 0.954 3.046 22 H -0.266 1.266 23 H -0.304 1.304 24 H -0.246 1.246 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.186 0.814 29 H 0.164 0.836 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.338 0.662 36 H 0.057 0.943 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 17.584 13.553 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.021 4.021 3 C -0.130 4.130 4 C -0.074 4.074 5 C -0.155 4.155 6 N 0.548 4.452 7 O -0.381 6.381 8 O -0.401 6.401 9 C -0.012 4.012 10 C -0.177 4.177 11 C -0.088 4.088 12 C -0.036 4.036 13 N -0.306 5.306 14 C 0.080 3.920 15 H 0.049 0.951 16 C -0.236 4.236 17 C -0.541 4.541 18 H 0.050 0.950 19 C -0.190 4.190 20 N -0.595 5.595 21 Si 0.781 3.219 22 H -0.192 1.192 23 H -0.233 1.233 24 H -0.170 1.170 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.203 0.797 29 H 0.181 0.819 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.156 0.844 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.051 17.091 13.366 21.794 hybrid contribution -0.364 -0.720 0.015 0.807 sum -2.414 16.371 13.381 21.281 Atomic orbital electron populations 1.21144 0.87896 1.05206 1.04313 1.20561 0.98562 0.91679 0.91273 1.21407 0.91507 0.99716 1.00332 1.21218 0.95653 0.95781 0.94797 1.21051 0.77378 0.97775 1.19288 1.43900 1.04604 0.98916 0.97795 1.94470 1.69938 1.32837 1.40833 1.94565 1.70415 1.33384 1.41739 1.19632 0.94309 0.93668 0.93605 1.20982 0.99119 0.93625 1.03992 1.19629 0.90940 0.96374 1.01882 1.21015 0.98643 0.92478 0.91462 1.60457 1.53608 1.05155 1.11400 1.19410 0.88977 0.88314 0.95341 0.95104 1.22720 0.99041 1.00596 1.01269 1.21271 1.26687 1.03559 1.02571 0.94979 1.25837 0.98473 0.97582 0.97069 1.70061 1.46539 1.16916 1.25978 0.85797 0.79444 0.75991 0.80677 1.19181 1.23265 1.16962 0.89258 0.90417 0.87770 0.79699 0.81851 0.90075 0.91858 0.89477 0.90648 0.91734 0.84374 0.92434 0.94766 0.91390 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.60 71.23 0.68 -0.88 16 2 C -0.02 -0.35 5.88 -19.87 -0.12 -0.46 16 3 C -0.11 -1.59 9.70 22.27 0.22 -1.37 16 4 C -0.06 -1.05 9.66 22.27 0.22 -0.84 16 5 C -0.07 -1.92 6.48 36.37 0.24 -1.69 16 6 N 0.03 0.95 4.11 -46.46 -0.19 0.76 16 7 O -0.16 -4.84 18.94 18.89 0.36 -4.49 16 8 O -0.19 -6.56 16.61 18.89 0.31 -6.25 16 9 C -0.01 -0.28 5.87 -19.87 -0.12 -0.40 16 10 C -0.12 -3.59 8.46 71.24 0.60 -2.99 16 11 C -0.09 -2.10 5.39 -19.87 -0.11 -2.21 16 12 C 0.09 2.48 4.79 85.55 0.41 2.89 16 13 N -0.68 -23.76 6.22 -499.48 -3.11 -26.87 16 14 C 0.19 7.92 2.16 44.17 0.10 8.02 16 15 H 0.03 1.33 6.85 -2.39 -0.02 1.32 16 16 C -0.18 -6.32 8.64 71.98 0.62 -5.70 16 17 C -0.50 -27.67 9.42 25.60 0.24 -27.43 16 18 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 19 C 0.01 0.39 5.45 84.65 0.46 0.85 16 20 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 21 Si 0.95 43.11 24.38 68.60 1.67 44.78 16 22 H -0.27 -11.30 6.87 99.48 0.68 -10.62 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 24 H -0.25 -10.03 6.53 99.48 0.65 -9.38 16 25 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.01 5.95 -2.39 -0.01 1.00 16 27 H 0.10 0.68 8.09 -2.39 -0.02 0.66 16 28 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.16 2.40 8.01 -2.91 -0.02 2.38 16 30 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 31 H 0.06 1.87 6.39 -2.39 -0.02 1.85 16 32 H 0.09 2.42 6.05 -2.39 -0.01 2.40 16 33 H 0.08 2.15 5.90 -2.39 -0.01 2.13 16 34 H 0.06 1.44 5.24 -2.38 -0.01 1.42 16 35 H 0.34 11.05 8.46 -89.69 -0.76 10.29 16 36 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 37 H 0.03 1.31 3.28 -2.39 -0.01 1.30 16 38 H 0.07 1.86 7.45 -2.39 -0.02 1.84 16 39 H 0.26 15.41 8.31 -92.72 -0.77 14.64 16 Total: -1.00 -69.59 316.74 3.04 -66.55 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.25 Total: 16.75 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 3.44 Total: -32.23 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -3.00 Total: -85.12 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.67 Total: -10.74 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.67 Total: 44.78 kcal Total: -69.59 3.04 -66.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203523035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.777 kcal (2) G-P(sol) polarization free energy of solvation -69.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds