Wall clock time and date at job start Mon Mar 30 2020 23:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38263 * 119.99977 * 2 1 4 4 C 1.38218 * 119.99737 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00045 * 0.27663 * 4 3 2 6 6 N 1.48012 * 119.99942 * 179.72481 * 5 4 3 7 7 O 1.21804 * 120.00224 * 36.96927 * 6 5 4 8 8 O 1.21802 * 120.00326 * 216.96675 * 6 5 4 9 9 C 1.38219 * 120.00097 * 359.52925 * 5 4 3 10 10 C 1.50693 * 120.00045 * 180.23335 * 9 5 4 11 11 C 1.38218 * 119.99814 * 179.97438 * 2 1 3 12 12 C 1.50689 * 120.00002 * 0.02562 * 11 2 1 13 13 N 1.46898 * 109.47309 * 89.99951 * 12 11 2 14 14 C 1.46899 * 111.00390 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.46939 * 35.00429 * 14 13 12 16 16 C 1.52996 * 109.47347 * 275.00232 * 14 13 12 17 17 C 1.50701 * 109.47230 * 155.00046 * 14 13 12 18 18 H 1.07997 * 119.99722 * 5.49892 * 17 14 13 19 19 C 1.37879 * 120.00099 * 185.49872 * 17 14 13 20 20 N 1.31510 * 119.99801 * 8.36253 * 19 17 14 21 21 Si 1.86794 * 119.99974 * 188.36548 * 19 17 14 22 22 H 1.48501 * 109.47157 * 84.99498 * 21 19 17 23 23 H 1.48500 * 109.47171 * 204.99199 * 21 19 17 24 24 H 1.48501 * 109.47387 * 324.99126 * 21 19 17 25 25 H 1.09005 * 109.46885 * 90.00361 * 1 2 3 26 26 H 1.08994 * 109.47423 * 210.00320 * 1 2 3 27 27 H 1.09003 * 109.47404 * 330.00499 * 1 2 3 28 28 H 1.07998 * 119.99849 * 359.97055 * 3 2 1 29 29 H 1.07992 * 119.99354 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47192 * 273.47127 * 10 9 5 31 31 H 1.09001 * 109.47359 * 33.47513 * 10 9 5 32 32 H 1.09008 * 109.47131 * 153.47517 * 10 9 5 33 33 H 1.09000 * 109.47189 * 209.99775 * 12 11 2 34 34 H 1.09001 * 109.47349 * 329.99968 * 12 11 2 35 35 H 1.00904 * 111.00054 * 303.95802 * 13 12 11 36 36 H 1.09002 * 109.47406 * 63.82873 * 16 14 13 37 37 H 1.09000 * 109.47459 * 183.83261 * 16 14 13 38 38 H 1.09006 * 109.47066 * 303.83345 * 16 14 13 39 39 H 0.96997 * 120.00100 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 -0.0047 6 7 5.7518 0.0000 -0.0103 7 8 6.3633 0.8413 0.6236 8 8 6.3585 -0.8414 -0.6488 9 6 3.5806 -1.1970 -0.0007 10 6 4.3341 -2.5020 -0.0011 11 6 2.1980 -1.1970 0.0005 12 6 1.4445 -2.5020 0.0005 13 7 1.2002 -2.9264 -1.3844 14 6 0.4665 -4.1984 -1.4237 15 1 -0.2371 -4.2378 -0.5920 16 6 1.4547 -5.3610 -1.3111 17 6 -0.2871 -4.3038 -2.7245 18 1 -0.1575 -3.5492 -3.4862 19 6 -1.1418 -5.3635 -2.9422 20 7 -1.4269 -6.1907 -1.9604 21 14 -1.8947 -5.6243 -4.6317 22 1 -0.9511 -6.3954 -5.4805 23 1 -3.1671 -6.3779 -4.4956 24 1 -2.1645 -4.3071 -5.2621 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6583 2.1327 -0.0005 29 1 4.1204 2.1326 0.0010 30 1 4.5664 -2.7872 -1.0272 31 1 5.2599 -2.3873 0.5626 32 1 3.7209 -3.2758 0.4611 33 1 2.0334 -3.2616 0.5147 34 1 0.4919 -2.3716 0.5140 35 1 0.7115 -2.2106 -1.9011 36 1 1.9509 -5.3235 -0.3413 37 1 0.9182 -6.3047 -1.4085 38 1 2.1993 -5.2829 -2.1034 39 1 -2.0285 -6.9361 -2.1134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203523036.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:22 Heat of formation + Delta-G solvation = 11.969291 kcal Electronic energy + Delta-G solvation = -21713.645814 eV Core-core repulsion = 18431.120589 eV Total energy + Delta-G solvation = -3282.525225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.17637 -40.04408 -36.51612 -36.15346 -34.01688 -33.51335 -31.81314 -29.00048 -28.65300 -27.30117 -25.52637 -24.87521 -24.50471 -21.23705 -21.17349 -19.95872 -18.65243 -18.60018 -17.63979 -16.59576 -16.13097 -15.47057 -15.07436 -14.56225 -14.31832 -13.89401 -13.53162 -13.36160 -13.28790 -12.86468 -12.65326 -12.41066 -12.03009 -11.97386 -11.65784 -11.64638 -11.45257 -11.12722 -11.04158 -10.90721 -10.82402 -10.79046 -10.42637 -10.31776 -10.08569 -9.20580 -9.07492 -8.89285 -8.54780 -7.46422 -6.15723 -4.19003 0.03936 0.93650 1.22657 1.48743 3.18754 3.24307 3.31098 3.33289 4.30321 4.34475 4.36333 4.50811 4.75768 4.77622 5.07243 5.18886 5.29287 5.32173 5.36014 5.47538 5.56762 5.62337 5.69000 5.74412 5.84138 6.03158 6.05842 6.19119 6.29158 6.40378 6.60578 6.69992 6.97183 7.03599 7.25714 7.67597 7.70254 7.71449 8.04141 8.17409 8.49923 8.90438 9.46864 10.93187 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004260 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.550148 B = 6570.625423 C = 7128.637664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.028 4.028 3 C -0.126 4.126 4 C -0.061 4.061 5 C -0.053 4.053 6 N 0.030 4.970 7 O -0.173 6.173 8 O -0.149 6.149 9 C 0.005 3.995 10 C -0.124 4.124 11 C -0.070 4.070 12 C 0.090 3.910 13 N -0.679 5.679 14 C 0.211 3.789 15 H 0.010 0.990 16 C -0.120 4.120 17 C -0.523 4.523 18 H 0.060 0.940 19 C 0.066 3.934 20 N -0.888 5.888 21 Si 0.894 3.106 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.333 0.667 36 H 0.008 0.992 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 12.550 5.964 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.028 4.028 3 C -0.145 4.145 4 C -0.081 4.081 5 C -0.136 4.136 6 N 0.550 4.450 7 O -0.387 6.387 8 O -0.369 6.369 9 C 0.003 3.997 10 C -0.180 4.180 11 C -0.071 4.071 12 C -0.039 4.039 13 N -0.310 5.310 14 C 0.104 3.896 15 H 0.027 0.973 16 C -0.178 4.178 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.722 3.278 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.150 0.850 36 H 0.027 0.973 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.131 12.075 5.962 14.411 hybrid contribution -0.854 0.169 -0.669 1.098 sum 4.277 12.244 5.293 14.008 Atomic orbital electron populations 1.21044 0.89759 1.03820 1.03891 1.20257 0.97288 0.92248 0.93052 1.20944 0.92278 0.98538 1.02738 1.20790 0.94737 0.96090 0.96460 1.20830 0.78558 0.96689 1.17496 1.43621 1.03768 0.99337 0.98252 1.94513 1.69264 1.33116 1.41775 1.94545 1.69630 1.32279 1.40413 1.19595 0.93649 0.93802 0.92686 1.21078 0.98996 0.92990 1.04938 1.19814 0.91472 0.96235 0.99625 1.21038 0.97455 0.91273 0.94102 1.60810 1.54585 1.07157 1.08473 1.19143 0.89685 0.83954 0.96817 0.97251 1.21664 0.98442 1.01051 0.96686 1.21171 1.24461 1.09391 1.01123 0.92193 1.24902 0.95892 0.96057 0.96823 1.69949 1.35557 1.16214 1.30854 0.86583 0.78409 0.78341 0.84489 1.20432 1.21338 1.19985 0.89530 0.89955 0.90922 0.83994 0.84009 0.88150 0.91716 0.89659 0.90078 0.94073 0.84978 0.97339 0.91646 0.94509 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.60 36.00 0.35 -0.96 16 2 C -0.03 -0.32 5.88 -104.62 -0.62 -0.94 16 3 C -0.13 -1.29 9.70 -39.58 -0.38 -1.68 16 4 C -0.06 -0.71 9.66 -39.58 -0.38 -1.09 16 5 C -0.05 -0.75 6.48 -79.95 -0.52 -1.27 16 6 N 0.03 0.46 4.13 33.96 0.14 0.60 16 7 O -0.17 -2.68 18.94 -29.46 -0.56 -3.23 16 8 O -0.15 -2.41 16.73 -29.46 -0.49 -2.90 16 9 C 0.00 0.07 5.87 -104.62 -0.61 -0.55 16 10 C -0.12 -1.74 8.35 36.00 0.30 -1.44 16 11 C -0.07 -0.98 5.39 -104.63 -0.56 -1.54 16 12 C 0.09 1.42 4.79 -4.98 -0.02 1.40 16 13 N -0.68 -12.97 6.29 -109.23 -0.69 -13.66 16 14 C 0.21 4.92 2.47 -68.87 -0.17 4.75 16 15 H 0.01 0.25 7.75 -51.93 -0.40 -0.15 16 16 C -0.12 -2.75 9.27 37.16 0.34 -2.41 16 17 C -0.52 -13.52 8.49 -34.44 -0.29 -13.81 16 18 H 0.06 1.54 7.69 -52.49 -0.40 1.14 16 19 C 0.07 1.74 5.19 -17.82 -0.09 1.65 16 20 N -0.89 -24.42 12.11 55.43 0.67 -23.75 16 21 Si 0.89 20.52 29.55 -169.99 -5.02 15.50 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.91 5.95 -51.93 -0.31 0.61 16 27 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.14 1.37 8.00 -52.49 -0.42 0.95 16 30 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.06 0.88 6.77 -51.93 -0.35 0.53 16 32 H 0.08 1.17 5.82 -51.92 -0.30 0.87 16 33 H 0.08 1.30 5.28 -51.93 -0.27 1.02 16 34 H 0.04 0.64 5.86 -51.93 -0.30 0.33 16 35 H 0.33 6.28 8.25 -39.29 -0.32 5.96 16 36 H 0.01 0.16 7.55 -51.93 -0.39 -0.23 16 37 H 0.06 1.65 6.78 -51.93 -0.35 1.30 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -28.08 324.78 -8.80 -36.88 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.08 Total: 3.56 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.67 Total: -17.89 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.12 Total: -36.80 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -1.05 Total: -6.13 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.08 -8.80 -36.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203523036.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.848 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds