Wall clock time and date at job start Mon Mar 30 2020 23:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38263 * 119.99977 * 2 1 4 4 C 1.38218 * 119.99737 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00045 * 0.27663 * 4 3 2 6 6 N 1.48012 * 119.99942 * 179.72481 * 5 4 3 7 7 O 1.21804 * 120.00224 * 36.96927 * 6 5 4 8 8 O 1.21802 * 120.00326 * 216.96675 * 6 5 4 9 9 C 1.38219 * 120.00097 * 359.52925 * 5 4 3 10 10 C 1.50693 * 120.00045 * 180.23335 * 9 5 4 11 11 C 1.38218 * 119.99814 * 179.97438 * 2 1 3 12 12 C 1.50689 * 120.00002 * 0.02562 * 11 2 1 13 13 N 1.46898 * 109.47309 * 89.99951 * 12 11 2 14 14 C 1.46899 * 111.00390 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.46939 * 35.00429 * 14 13 12 16 16 C 1.52996 * 109.47347 * 275.00232 * 14 13 12 17 17 C 1.50701 * 109.47230 * 155.00046 * 14 13 12 18 18 H 1.07997 * 119.99722 * 5.49892 * 17 14 13 19 19 C 1.37879 * 120.00099 * 185.49872 * 17 14 13 20 20 N 1.31510 * 119.99801 * 8.36253 * 19 17 14 21 21 Si 1.86794 * 119.99974 * 188.36548 * 19 17 14 22 22 H 1.48501 * 109.47157 * 84.99498 * 21 19 17 23 23 H 1.48500 * 109.47171 * 204.99199 * 21 19 17 24 24 H 1.48501 * 109.47387 * 324.99126 * 21 19 17 25 25 H 1.09005 * 109.46885 * 90.00361 * 1 2 3 26 26 H 1.08994 * 109.47423 * 210.00320 * 1 2 3 27 27 H 1.09003 * 109.47404 * 330.00499 * 1 2 3 28 28 H 1.07998 * 119.99849 * 359.97055 * 3 2 1 29 29 H 1.07992 * 119.99354 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47192 * 273.47127 * 10 9 5 31 31 H 1.09001 * 109.47359 * 33.47513 * 10 9 5 32 32 H 1.09008 * 109.47131 * 153.47517 * 10 9 5 33 33 H 1.09000 * 109.47189 * 209.99775 * 12 11 2 34 34 H 1.09001 * 109.47349 * 329.99968 * 12 11 2 35 35 H 1.00904 * 111.00054 * 303.95802 * 13 12 11 36 36 H 1.09002 * 109.47406 * 63.82873 * 16 14 13 37 37 H 1.09000 * 109.47459 * 183.83261 * 16 14 13 38 38 H 1.09006 * 109.47066 * 303.83345 * 16 14 13 39 39 H 0.96997 * 120.00100 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 -0.0047 6 7 5.7518 0.0000 -0.0103 7 8 6.3633 0.8413 0.6236 8 8 6.3585 -0.8414 -0.6488 9 6 3.5806 -1.1970 -0.0007 10 6 4.3341 -2.5020 -0.0011 11 6 2.1980 -1.1970 0.0005 12 6 1.4445 -2.5020 0.0005 13 7 1.2002 -2.9264 -1.3844 14 6 0.4665 -4.1984 -1.4237 15 1 -0.2371 -4.2378 -0.5920 16 6 1.4547 -5.3610 -1.3111 17 6 -0.2871 -4.3038 -2.7245 18 1 -0.1575 -3.5492 -3.4862 19 6 -1.1418 -5.3635 -2.9422 20 7 -1.4269 -6.1907 -1.9604 21 14 -1.8947 -5.6243 -4.6317 22 1 -0.9511 -6.3954 -5.4805 23 1 -3.1671 -6.3779 -4.4956 24 1 -2.1645 -4.3071 -5.2621 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6583 2.1327 -0.0005 29 1 4.1204 2.1326 0.0010 30 1 4.5664 -2.7872 -1.0272 31 1 5.2599 -2.3873 0.5626 32 1 3.7209 -3.2758 0.4611 33 1 2.0334 -3.2616 0.5147 34 1 0.4919 -2.3716 0.5140 35 1 0.7115 -2.2106 -1.9011 36 1 1.9509 -5.3235 -0.3413 37 1 0.9182 -6.3047 -1.4085 38 1 2.1993 -5.2829 -2.1034 39 1 -2.0285 -6.9361 -2.1134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203523036.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:21 Heat of formation + Delta-G solvation = -3.053130 kcal Electronic energy + Delta-G solvation = -21714.297235 eV Core-core repulsion = 18431.120589 eV Total energy + Delta-G solvation = -3283.176646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.31574 -41.08196 -37.75416 -37.66593 -35.12339 -34.92636 -33.38032 -30.54103 -29.66552 -28.49039 -27.36940 -26.03911 -25.83512 -22.36188 -22.24833 -21.72053 -19.80382 -19.72482 -18.80298 -18.41376 -17.31268 -16.81006 -16.36393 -15.88307 -15.75533 -15.20877 -14.79722 -14.62545 -14.30434 -14.16758 -13.91089 -13.64121 -13.41559 -13.04549 -12.96462 -12.91773 -12.75792 -12.69695 -12.62827 -12.42990 -12.27602 -12.17767 -12.08607 -11.97840 -11.68275 -10.95410 -10.55104 -10.16179 -10.00554 -9.06245 -8.17172 -6.26266 -1.06837 -0.03411 0.14392 0.39736 1.41856 1.45009 1.52300 2.20931 2.41996 3.15759 3.29470 3.39693 3.59035 3.65375 3.81749 3.95961 4.08068 4.31102 4.37322 4.47773 4.50762 4.65108 4.67458 4.77989 4.82091 4.83672 4.99689 5.05366 5.08878 5.10964 5.18541 5.25788 5.36960 5.40711 5.59553 5.66264 5.81753 6.15413 6.41464 6.49687 6.74776 6.98404 7.43584 8.91364 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004260 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.550148 B = 6570.625423 C = 7128.637664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.022 4.022 3 C -0.110 4.110 4 C -0.054 4.054 5 C -0.071 4.071 6 N 0.032 4.968 7 O -0.167 6.167 8 O -0.183 6.183 9 C -0.009 4.009 10 C -0.119 4.119 11 C -0.085 4.085 12 C 0.095 3.905 13 N -0.676 5.676 14 C 0.218 3.782 15 H -0.018 1.018 16 C -0.110 4.110 17 C -0.536 4.536 18 H 0.059 0.941 19 C 0.020 3.980 20 N -0.917 5.917 21 Si 0.954 3.046 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.266 1.266 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.185 0.815 29 H 0.166 0.834 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.335 0.665 36 H 0.027 0.973 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 15.009 5.840 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 C -0.129 4.129 4 C -0.073 4.073 5 C -0.153 4.153 6 N 0.549 4.451 7 O -0.384 6.384 8 O -0.395 6.395 9 C -0.011 4.011 10 C -0.175 4.175 11 C -0.086 4.086 12 C -0.033 4.033 13 N -0.307 5.307 14 C 0.110 3.890 15 H -0.001 1.001 16 C -0.168 4.168 17 C -0.574 4.574 18 H 0.077 0.923 19 C -0.180 4.180 20 N -0.556 5.556 21 Si 0.780 3.220 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.123 0.877 28 H 0.202 0.798 29 H 0.183 0.817 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.152 0.848 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.494 14.505 5.807 16.258 hybrid contribution -0.666 -0.480 -0.548 0.987 sum 3.828 14.025 5.259 15.460 Atomic orbital electron populations 1.21097 0.88506 1.04776 1.04094 1.20525 0.98207 0.92002 0.91566 1.21378 0.91662 0.99460 1.00359 1.21202 0.95432 0.95942 0.94759 1.21017 0.77519 0.97638 1.19166 1.43847 1.04463 0.98970 0.97808 1.94482 1.69825 1.32863 1.41241 1.94549 1.70286 1.33078 1.41603 1.19594 0.93939 0.93904 0.93637 1.20980 0.99056 0.93416 1.04072 1.19613 0.91173 0.96093 1.01760 1.20945 0.97888 0.92462 0.92008 1.60669 1.53334 1.05853 1.10852 1.18897 0.89309 0.86038 0.94785 1.00072 1.21506 0.97991 0.99651 0.97692 1.21504 1.24581 1.09318 1.02001 0.92328 1.25629 0.96534 0.95929 0.99919 1.70059 1.36282 1.16703 1.32557 0.85637 0.77496 0.78406 0.80483 1.20455 1.21145 1.19095 0.89539 0.91335 0.87697 0.79775 0.81672 0.89459 0.91774 0.89798 0.90667 0.93622 0.84778 0.95401 0.94322 0.94722 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.60 71.24 0.68 -1.54 16 2 C -0.02 -0.46 5.88 -19.86 -0.12 -0.57 16 3 C -0.11 -1.77 9.70 22.27 0.22 -1.55 16 4 C -0.05 -1.07 9.66 22.27 0.22 -0.85 16 5 C -0.07 -1.89 6.48 36.38 0.24 -1.65 16 6 N 0.03 0.95 4.13 -46.47 -0.19 0.76 16 7 O -0.17 -4.93 18.94 18.88 0.36 -4.58 16 8 O -0.18 -5.98 16.73 18.88 0.32 -5.67 16 9 C -0.01 -0.25 5.87 -19.87 -0.12 -0.36 16 10 C -0.12 -3.42 8.35 71.23 0.59 -2.83 16 11 C -0.09 -2.26 5.39 -19.87 -0.11 -2.37 16 12 C 0.10 2.99 4.79 85.55 0.41 3.40 16 13 N -0.68 -25.81 6.29 -499.49 -3.14 -28.96 16 14 C 0.22 10.29 2.47 44.17 0.11 10.40 16 15 H -0.02 -0.96 7.75 -2.39 -0.02 -0.98 16 16 C -0.11 -5.13 9.27 71.98 0.67 -4.46 16 17 C -0.54 -27.83 8.49 25.60 0.22 -27.61 16 18 H 0.06 3.00 7.69 -2.91 -0.02 2.97 16 19 C 0.02 1.05 5.19 84.66 0.44 1.49 16 20 N -0.92 -51.17 12.11 21.45 0.26 -50.91 16 21 Si 0.95 42.01 29.55 68.60 2.03 44.04 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.07 1.40 5.95 -2.39 -0.01 1.39 16 27 H 0.10 1.15 8.09 -2.39 -0.02 1.13 16 28 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 29 H 0.17 2.48 8.00 -2.91 -0.02 2.45 16 30 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.06 1.80 6.77 -2.39 -0.02 1.78 16 32 H 0.08 2.36 5.82 -2.38 -0.01 2.35 16 33 H 0.08 2.43 5.28 -2.39 -0.01 2.41 16 34 H 0.05 1.41 5.86 -2.39 -0.01 1.39 16 35 H 0.33 12.49 8.25 -89.69 -0.74 11.75 16 36 H 0.03 1.14 7.55 -2.39 -0.02 1.12 16 37 H 0.04 1.98 6.78 -2.39 -0.02 1.97 16 38 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -60.87 324.78 3.41 -57.46 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.34 Total: 16.35 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 3.45 Total: -28.51 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -3.07 Total: -79.10 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.67 Total: -10.24 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -60.87 3.41 -57.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203523036.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.404 kcal (2) G-P(sol) polarization free energy of solvation -60.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds