Wall clock time and date at job start Tue Mar 31 2020 00:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38257 * 119.55948 * 2 1 4 4 C 1.38538 * 119.22178 * 179.74453 * 3 2 1 5 5 C 1.39132 * 118.36946 * 0.49602 * 4 3 2 6 6 O 1.35918 * 120.47017 * 179.75640 * 5 4 3 7 7 C 1.42904 * 116.99910 * 354.07250 * 6 5 4 8 8 C 1.53510 * 114.17040 * 202.11150 * 7 6 5 9 9 N 1.47476 * 87.93092 * 220.32791 * 8 7 6 10 10 C 1.46905 * 110.99992 * 138.70522 * 9 8 7 11 11 C 1.50693 * 109.47311 * 169.99795 * 10 9 8 12 12 H 1.08007 * 119.99910 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00276 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00004 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00223 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47170 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47442 * 119.99876 * 15 13 11 18 18 H 1.48498 * 109.46954 * 239.99864 * 15 13 11 19 19 C 1.47483 * 87.83714 * 27.01243 * 9 8 7 20 20 C 1.38707 * 119.06120 * 359.48309 * 5 4 3 21 21 C 1.50693 * 119.66266 * 180.25381 * 20 5 4 22 22 O 1.42901 * 109.47205 * 89.99953 * 21 20 5 23 23 N 1.31848 * 120.68027 * 0.27489 * 20 5 4 24 24 H 1.08997 * 109.47156 * 270.02593 * 1 2 3 25 25 H 1.08998 * 109.46827 * 30.01945 * 1 2 3 26 26 H 1.08997 * 109.47069 * 150.02562 * 1 2 3 27 27 H 1.07998 * 120.38554 * 0.02562 * 3 2 1 28 28 H 1.07992 * 120.81161 * 180.25447 * 4 3 2 29 29 H 1.09003 * 113.25365 * 335.06522 * 7 6 5 30 30 H 1.09000 * 113.47498 * 105.55616 * 8 7 6 31 31 H 1.09004 * 113.47266 * 335.09464 * 8 7 6 32 32 H 1.09002 * 109.46656 * 289.99755 * 10 9 8 33 33 H 1.09001 * 109.46843 * 49.99577 * 10 9 8 34 34 H 0.96996 * 120.00310 * 179.97438 * 14 13 11 35 35 H 1.08991 * 113.47604 * 87.75479 * 19 9 8 36 36 H 1.09004 * 113.46973 * 218.22631 * 19 9 8 37 37 H 1.08994 * 109.47534 * 209.99645 * 21 20 5 38 38 H 1.09001 * 109.47197 * 330.00237 * 21 20 5 39 39 H 0.96701 * 114.00604 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1891 1.2026 0.0000 4 6 3.5745 1.1945 0.0054 5 6 4.2284 -0.0336 0.0000 6 8 5.5863 -0.0914 0.0000 7 6 6.2884 1.1469 -0.1258 8 6 7.7251 1.0048 -0.6476 9 7 8.1247 2.0352 0.3289 10 6 9.4020 1.6889 0.9666 11 6 9.8994 2.8653 1.7663 12 1 9.3244 3.7790 1.7974 13 6 11.0885 2.7752 2.4584 14 7 11.7884 1.6624 2.4209 15 14 11.7047 4.2332 3.4503 16 1 10.7406 5.3564 3.3305 17 1 11.8347 3.8419 4.8770 18 1 13.0289 4.6606 2.9316 19 6 6.9851 1.6081 1.1619 20 6 3.4748 -1.1982 0.0005 21 6 4.1691 -2.5356 0.0005 22 8 4.3890 -2.9582 1.3478 23 7 2.1574 -1.1470 0.0005 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6482 2.1374 0.0004 28 1 4.1331 2.1187 0.0096 29 1 5.7070 1.9224 -0.6246 30 1 7.8437 1.3196 -1.6844 31 1 8.1637 0.0265 -0.4507 32 1 9.2580 0.8346 1.6281 33 1 10.1340 1.4353 0.1997 34 1 12.6252 1.5991 2.9075 35 1 7.2264 0.7909 1.8417 36 1 6.4767 2.4345 1.6587 37 1 3.5465 -3.2683 -0.5129 38 1 5.1263 -2.4482 -0.5136 39 1 4.8328 -3.8139 1.4243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225284401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:55 Heat of formation + Delta-G solvation = -10.388344 kcal Electronic energy + Delta-G solvation = -21166.156120 eV Core-core repulsion = 17882.661395 eV Total energy + Delta-G solvation = -3283.494725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97722 -39.61501 -37.32373 -36.73704 -33.01290 -32.74944 -32.10913 -29.48939 -28.17733 -26.13715 -25.66260 -25.20466 -23.06360 -21.91644 -21.24742 -19.54127 -18.33451 -17.54258 -17.12927 -16.39689 -15.81868 -15.44088 -15.05994 -14.87292 -14.38468 -14.32795 -14.22632 -13.97896 -13.43686 -13.27303 -12.75529 -12.41270 -12.35109 -12.26552 -12.14615 -12.02306 -11.61942 -11.28316 -11.01274 -10.63844 -10.37221 -10.19374 -10.12124 -9.89408 -9.80078 -9.62968 -9.29363 -8.49998 -8.27285 -8.06959 -6.08729 -4.10501 0.92689 1.16190 3.10639 3.28243 3.35523 3.40887 3.46882 3.98999 4.38392 4.39851 4.51249 4.63488 4.70131 4.77987 4.90453 5.00885 5.04072 5.22730 5.26794 5.35869 5.40088 5.44236 5.55448 5.61534 5.78977 5.89057 5.92628 5.98809 6.04119 6.16232 6.20452 6.41396 6.43136 7.08396 7.29883 7.54553 7.57675 7.75446 7.88162 8.00565 8.35254 8.96709 9.53926 11.02437 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.003476 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.479671 B = 8053.451003 C = 8527.167849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.077 3.923 3 C -0.123 4.123 4 C -0.165 4.165 5 C 0.107 3.893 6 O -0.289 6.289 7 C 0.038 3.962 8 C 0.005 3.995 9 N -0.460 5.460 10 C 0.161 3.839 11 C -0.507 4.507 12 H 0.064 0.936 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.003 4.003 20 C 0.093 3.907 21 C 0.138 3.862 22 O -0.563 6.563 23 N -0.435 5.435 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.138 0.862 28 H 0.147 0.853 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.007 0.993 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.318 -5.459 -6.915 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.061 4.061 3 C -0.143 4.143 4 C -0.191 4.191 5 C 0.058 3.942 6 O -0.200 6.200 7 C -0.019 4.019 8 C -0.124 4.124 9 N -0.184 5.184 10 C 0.035 3.965 11 C -0.545 4.545 12 H 0.083 0.917 13 C -0.147 4.147 14 N -0.538 5.538 15 Si 0.728 3.272 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.132 4.132 20 C -0.046 4.046 21 C 0.060 3.940 22 O -0.369 6.369 23 N -0.146 5.146 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.155 0.845 28 H 0.164 0.836 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.025 0.975 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -19.636 -5.211 -6.892 21.453 hybrid contribution 1.301 0.449 0.772 1.578 sum -18.335 -4.762 -6.120 19.908 Atomic orbital electron populations 1.20599 0.88636 1.03141 1.02874 1.21110 0.97026 0.88018 0.99979 1.21835 0.93829 0.99361 0.99281 1.21815 0.95486 0.97828 1.04017 1.19912 0.84472 0.94274 0.95576 1.86243 1.13937 1.33678 1.86153 1.24631 0.92292 0.84804 1.00162 1.24030 0.91002 0.97500 0.99857 1.69044 1.04013 1.37406 1.07975 1.20300 0.85525 0.96571 0.94126 1.21104 1.05714 0.99335 1.28383 0.91743 1.25010 0.96645 0.96241 0.96810 1.69961 1.14997 1.25954 1.42900 0.86400 0.78697 0.82479 0.79622 1.19616 1.21010 1.20943 1.24280 0.93854 0.99835 0.95211 1.20264 0.88462 0.93083 1.02831 1.20629 0.97985 0.90958 0.84409 1.86538 1.82615 1.41885 1.25814 1.67255 1.07749 1.29481 1.10120 0.90740 0.90927 0.90724 0.84457 0.83580 0.87530 0.89607 0.90773 0.97503 0.95000 0.92862 0.90501 0.90076 0.92094 0.91400 0.77085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.17 36.01 0.37 -0.41 16 2 C 0.08 0.91 6.78 -82.57 -0.56 0.35 16 3 C -0.12 -1.35 9.74 -39.46 -0.38 -1.73 16 4 C -0.17 -2.08 9.12 -39.14 -0.36 -2.43 16 5 C 0.11 1.56 6.66 -39.08 -0.26 1.30 16 6 O -0.29 -4.53 9.24 -19.48 -0.18 -4.71 16 7 C 0.04 0.58 4.05 -26.20 -0.11 0.48 16 8 C 0.01 0.09 7.52 -7.55 -0.06 0.03 16 9 N -0.46 -9.78 6.32 -246.12 -1.55 -11.34 16 10 C 0.16 4.16 4.57 -4.98 -0.02 4.14 16 11 C -0.51 -14.37 9.39 -34.44 -0.32 -14.69 16 12 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 15 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C 0.00 -0.05 7.55 -7.54 -0.06 -0.10 16 20 C 0.09 1.36 6.43 -82.42 -0.53 0.83 16 21 C 0.14 1.73 7.11 36.00 0.26 1.99 16 22 O -0.56 -7.44 13.64 -35.23 -0.48 -7.92 16 23 N -0.43 -6.13 10.18 -5.62 -0.06 -6.19 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.15 1.63 6.05 -52.49 -0.32 1.31 16 29 H 0.11 1.43 6.02 -51.93 -0.31 1.12 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 32 H 0.01 0.20 7.30 -51.93 -0.38 -0.18 16 33 H 0.03 0.87 8.08 -51.93 -0.42 0.46 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.08 1.55 7.42 -51.93 -0.39 1.16 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 39 H 0.38 3.01 9.12 45.56 0.42 3.43 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -33.47 330.45 -8.41 -41.88 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.70 Total: 1.38 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.13 Total: -8.81 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.88 Total: -43.47 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.66 Total: -12.63 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.47 -8.41 -41.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225284401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.495 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds