Wall clock time and date at job start Tue Mar 31 2020 00:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38257 * 119.55948 * 2 1 4 4 C 1.38538 * 119.22178 * 179.74453 * 3 2 1 5 5 C 1.39132 * 118.36946 * 0.49602 * 4 3 2 6 6 O 1.35918 * 120.47017 * 179.75640 * 5 4 3 7 7 C 1.42904 * 116.99910 * 354.07250 * 6 5 4 8 8 C 1.53510 * 114.17040 * 202.11150 * 7 6 5 9 9 N 1.47476 * 87.93092 * 220.32791 * 8 7 6 10 10 C 1.46905 * 110.99992 * 138.70522 * 9 8 7 11 11 C 1.50693 * 109.47311 * 169.99795 * 10 9 8 12 12 H 1.08007 * 119.99910 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00276 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00004 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00223 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47170 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47442 * 119.99876 * 15 13 11 18 18 H 1.48498 * 109.46954 * 239.99864 * 15 13 11 19 19 C 1.47483 * 87.83714 * 27.01243 * 9 8 7 20 20 C 1.38707 * 119.06120 * 359.48309 * 5 4 3 21 21 C 1.50693 * 119.66266 * 180.25381 * 20 5 4 22 22 O 1.42901 * 109.47205 * 89.99953 * 21 20 5 23 23 N 1.31848 * 120.68027 * 0.27489 * 20 5 4 24 24 H 1.08997 * 109.47156 * 270.02593 * 1 2 3 25 25 H 1.08998 * 109.46827 * 30.01945 * 1 2 3 26 26 H 1.08997 * 109.47069 * 150.02562 * 1 2 3 27 27 H 1.07998 * 120.38554 * 0.02562 * 3 2 1 28 28 H 1.07992 * 120.81161 * 180.25447 * 4 3 2 29 29 H 1.09003 * 113.25365 * 335.06522 * 7 6 5 30 30 H 1.09000 * 113.47498 * 105.55616 * 8 7 6 31 31 H 1.09004 * 113.47266 * 335.09464 * 8 7 6 32 32 H 1.09002 * 109.46656 * 289.99755 * 10 9 8 33 33 H 1.09001 * 109.46843 * 49.99577 * 10 9 8 34 34 H 0.96996 * 120.00310 * 179.97438 * 14 13 11 35 35 H 1.08991 * 113.47604 * 87.75479 * 19 9 8 36 36 H 1.09004 * 113.46973 * 218.22631 * 19 9 8 37 37 H 1.08994 * 109.47534 * 209.99645 * 21 20 5 38 38 H 1.09001 * 109.47197 * 330.00237 * 21 20 5 39 39 H 0.96701 * 114.00604 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1891 1.2026 0.0000 4 6 3.5745 1.1945 0.0054 5 6 4.2284 -0.0336 0.0000 6 8 5.5863 -0.0914 0.0000 7 6 6.2884 1.1469 -0.1258 8 6 7.7251 1.0048 -0.6476 9 7 8.1247 2.0352 0.3289 10 6 9.4020 1.6889 0.9666 11 6 9.8994 2.8653 1.7663 12 1 9.3244 3.7790 1.7974 13 6 11.0885 2.7752 2.4584 14 7 11.7884 1.6624 2.4209 15 14 11.7047 4.2332 3.4503 16 1 10.7406 5.3564 3.3305 17 1 11.8347 3.8419 4.8770 18 1 13.0289 4.6606 2.9316 19 6 6.9851 1.6081 1.1619 20 6 3.4748 -1.1982 0.0005 21 6 4.1691 -2.5356 0.0005 22 8 4.3890 -2.9582 1.3478 23 7 2.1574 -1.1470 0.0005 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6482 2.1374 0.0004 28 1 4.1331 2.1187 0.0096 29 1 5.7070 1.9224 -0.6246 30 1 7.8437 1.3196 -1.6844 31 1 8.1637 0.0265 -0.4507 32 1 9.2580 0.8346 1.6281 33 1 10.1340 1.4353 0.1997 34 1 12.6252 1.5991 2.9075 35 1 7.2264 0.7909 1.8417 36 1 6.4767 2.4345 1.6587 37 1 3.5465 -3.2683 -0.5129 38 1 5.1263 -2.4482 -0.5136 39 1 4.8328 -3.8139 1.4243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225284401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:54 Heat of formation + Delta-G solvation = -37.692118 kcal Electronic energy + Delta-G solvation = -21167.340101 eV Core-core repulsion = 17882.661395 eV Total energy + Delta-G solvation = -3284.678705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.06933 -40.92093 -38.57058 -37.71478 -35.07303 -33.71626 -33.06518 -31.26160 -29.13998 -27.45632 -27.10959 -26.63578 -24.43325 -23.07384 -22.59661 -20.93635 -19.48683 -18.60916 -18.50921 -18.08651 -17.08356 -16.64298 -16.50695 -16.28417 -15.86303 -15.45886 -15.18108 -14.92173 -14.75563 -14.58695 -14.08167 -13.91377 -13.76134 -13.54216 -13.16407 -12.97972 -12.95053 -12.83683 -12.47226 -12.42126 -12.19540 -11.77354 -11.52603 -11.24814 -11.07716 -10.76582 -10.66013 -10.59919 -9.85128 -9.28796 -8.26296 -6.37090 -0.00978 0.19523 1.39356 1.39575 1.53758 1.93540 2.37848 2.54205 3.05831 3.10478 3.19502 3.28774 3.49471 3.68159 3.77605 3.86571 4.04325 4.05095 4.24844 4.36943 4.39614 4.46705 4.55114 4.60552 4.65380 4.75035 4.79587 4.80206 4.84897 4.98886 5.01293 5.11911 5.16987 5.49897 5.54685 5.68371 5.98340 6.19410 6.31475 6.76900 6.83839 6.93826 7.32726 8.85426 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.003476 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.479671 B = 8053.451003 C = 8527.167849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.071 3.929 3 C -0.118 4.118 4 C -0.167 4.167 5 C 0.078 3.922 6 O -0.302 6.302 7 C 0.068 3.932 8 C 0.002 3.998 9 N -0.471 5.471 10 C 0.175 3.825 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.973 3.027 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.276 1.276 19 C -0.009 4.009 20 C 0.071 3.929 21 C 0.138 3.862 22 O -0.587 6.587 23 N -0.457 5.457 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.175 0.825 28 H 0.161 0.839 29 H 0.137 0.863 30 H 0.110 0.890 31 H 0.063 0.937 32 H -0.021 1.021 33 H 0.007 0.993 34 H 0.266 0.734 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.309 -3.755 -7.204 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.068 4.068 3 C -0.137 4.137 4 C -0.193 4.193 5 C 0.030 3.970 6 O -0.213 6.213 7 C 0.011 3.989 8 C -0.127 4.127 9 N -0.195 5.195 10 C 0.049 3.951 11 C -0.566 4.566 12 H 0.080 0.920 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.797 3.203 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.201 1.201 19 C -0.138 4.138 20 C -0.068 4.068 21 C 0.060 3.940 22 O -0.396 6.396 23 N -0.169 5.169 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.091 0.909 27 H 0.193 0.807 28 H 0.179 0.821 29 H 0.155 0.845 30 H 0.128 0.872 31 H 0.081 0.919 32 H -0.003 1.003 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -21.640 -3.533 -7.192 23.076 hybrid contribution 1.779 -0.141 0.844 1.974 sum -19.861 -3.674 -6.349 21.172 Atomic orbital electron populations 1.20720 0.86037 1.04512 1.03791 1.21851 0.98853 0.87856 0.98242 1.22253 0.93277 1.00630 0.97550 1.22085 0.96476 0.97478 1.03272 1.20112 0.83808 0.95435 0.97628 1.86208 1.15024 1.33329 1.86779 1.24312 0.91732 0.85530 0.97292 1.24084 0.92349 0.96049 1.00208 1.68919 1.02577 1.38876 1.09161 1.19947 0.87415 0.94931 0.92849 1.21436 1.06210 0.99841 1.29070 0.91956 1.25965 0.96756 0.99234 0.97825 1.70081 1.15492 1.28101 1.43768 0.85277 0.78261 0.78829 0.77913 1.18668 1.20340 1.20129 1.24290 0.93558 0.99600 0.96377 1.20576 0.88991 0.93838 1.03357 1.20686 0.98226 0.90950 0.84169 1.86476 1.83084 1.43535 1.26479 1.67328 1.07567 1.30864 1.11148 0.89888 0.88115 0.90860 0.80715 0.82134 0.84536 0.87213 0.91892 1.00315 0.97471 0.92519 0.92838 0.88983 0.90601 0.91356 0.74873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 10.17 71.24 0.72 -0.51 16 2 C 0.07 1.51 6.78 42.56 0.29 1.80 16 3 C -0.12 -2.19 9.74 22.35 0.22 -1.98 16 4 C -0.17 -3.80 9.12 22.56 0.21 -3.59 16 5 C 0.08 2.22 6.66 22.60 0.15 2.37 16 6 O -0.30 -9.37 9.24 -92.62 -0.86 -10.23 16 7 C 0.07 2.04 4.05 30.94 0.13 2.16 16 8 C 0.00 0.07 7.52 83.58 0.63 0.70 16 9 N -0.47 -20.28 6.32 -932.97 -5.89 -26.18 16 10 C 0.18 9.45 4.57 85.55 0.39 9.84 16 11 C -0.53 -30.44 9.39 25.60 0.24 -30.20 16 12 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 15 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 C -0.01 -0.34 7.55 83.57 0.63 0.30 16 20 C 0.07 2.03 6.43 42.67 0.27 2.30 16 21 C 0.14 3.46 7.11 71.23 0.51 3.97 16 22 O -0.59 -15.69 13.64 -148.98 -2.03 -17.72 16 23 N -0.46 -12.41 10.18 -171.69 -1.75 -14.16 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.10 0.77 8.08 -2.39 -0.02 0.75 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 28 H 0.16 3.07 6.05 -2.91 -0.02 3.05 16 29 H 0.14 3.29 6.02 -2.39 -0.01 3.27 16 30 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.06 2.32 7.91 -2.38 -0.02 2.30 16 32 H -0.02 -1.22 7.30 -2.39 -0.02 -1.24 16 33 H 0.01 0.41 8.08 -2.39 -0.02 0.40 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.05 2.26 7.42 -2.39 -0.02 2.24 16 36 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.65 7.52 -2.39 -0.02 1.63 16 39 H 0.40 6.42 9.12 -74.06 -0.68 5.75 16 Total: -1.00 -73.68 330.45 -2.98 -76.67 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.39 Total: 13.75 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.85 Total: -12.36 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -7.36 Total: -96.66 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -2.89 Total: -27.95 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -73.68 -2.98 -76.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225284401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.975 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds