Wall clock time and date at job start Tue Mar 31 2020 00:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38247 * 119.55983 * 2 1 4 4 C 1.38534 * 119.22976 * 180.02562 * 3 2 1 5 5 C 1.39144 * 118.36871 * 0.02562 * 4 3 2 6 6 O 1.35917 * 120.47192 * 180.02562 * 5 4 3 7 7 C 1.42900 * 116.99719 * 354.30128 * 6 5 4 8 8 H 1.08999 * 110.88700 * 327.63740 * 7 6 5 9 9 C 1.55161 * 110.99783 * 203.75842 * 7 6 5 10 10 C 1.54324 * 102.93716 * 206.38502 * 9 7 6 11 11 N 1.47020 * 107.27409 * 22.19753 * 10 9 7 12 12 C 1.36932 * 125.64711 * 181.02293 * 11 10 9 13 13 H 1.08005 * 120.00053 * 180.02562 * 12 11 10 14 14 C 1.38806 * 120.00434 * 0.02562 * 12 11 10 15 15 N 1.31626 * 119.99748 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00450 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47304 * 270.00050 * 16 14 12 18 18 H 1.48508 * 109.47155 * 29.99935 * 16 14 12 19 19 H 1.48503 * 109.47358 * 149.99791 * 16 14 12 20 20 C 1.47420 * 108.70234 * 1.28321 * 11 10 9 21 21 C 1.38703 * 119.05347 * 0.26636 * 5 4 3 22 22 C 1.50706 * 119.66031 * 179.72726 * 21 5 4 23 23 O 1.42895 * 109.46645 * 90.00060 * 22 21 5 24 24 N 1.31844 * 120.68183 * 359.43955 * 21 5 4 25 25 H 1.09004 * 109.47025 * 90.00267 * 1 2 3 26 26 H 1.08998 * 109.47236 * 210.00033 * 1 2 3 27 27 H 1.08994 * 109.47291 * 330.00253 * 1 2 3 28 28 H 1.08006 * 120.38670 * 0.03915 * 3 2 1 29 29 H 1.07992 * 120.81703 * 180.02562 * 4 3 2 30 30 H 1.09003 * 110.71732 * 88.02624 * 9 7 6 31 31 H 1.08993 * 110.87339 * 324.82092 * 9 7 6 32 32 H 1.08997 * 109.88548 * 262.77466 * 10 9 7 33 33 H 1.09006 * 109.87712 * 141.61472 * 10 9 7 34 34 H 0.97001 * 119.99854 * 180.02562 * 15 14 12 35 35 H 1.09002 * 110.36748 * 94.48590 * 20 11 10 36 36 H 1.09000 * 110.36864 * 216.80409 * 20 11 10 37 37 H 1.08992 * 109.47177 * 210.00371 * 22 21 5 38 38 H 1.09001 * 109.46701 * 330.00632 * 22 21 5 39 39 H 0.96706 * 113.99657 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.2025 0.0000 4 6 3.5743 1.1946 -0.0005 5 6 4.2284 -0.0336 -0.0016 6 8 5.5863 -0.0913 -0.0017 7 6 6.2882 1.1471 -0.1270 8 1 5.7275 1.8511 -0.7419 9 6 7.7137 0.9230 -0.6973 10 6 8.5020 2.1270 -0.1400 11 7 7.7800 2.6104 1.0459 12 6 8.1425 3.6803 1.8199 13 1 7.5428 3.9563 2.6747 14 6 9.2807 4.4101 1.5059 15 7 10.0119 4.0734 0.4645 16 14 9.7756 5.8691 2.5621 17 1 9.1405 7.1023 2.0318 18 1 9.3273 5.6432 3.9598 19 1 11.2525 6.0218 2.5347 20 6 6.6045 1.7487 1.2675 21 6 3.4748 -1.1980 -0.0077 22 6 4.1691 -2.5356 -0.0152 23 8 4.3889 -2.9656 1.3297 24 7 2.1574 -1.1469 -0.0014 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6481 2.1374 0.0006 29 1 4.1329 2.1188 -0.0001 30 1 7.7004 0.9419 -1.7871 31 1 8.1342 -0.0147 -0.3344 32 1 8.5530 2.9161 -0.8902 33 1 9.5077 1.8137 0.1404 34 1 10.8075 4.5832 0.2453 35 1 6.8424 0.9582 1.9792 36 1 5.7620 2.3409 1.6247 37 1 3.5465 -3.2652 -0.5329 38 1 5.1263 -2.4452 -0.5287 39 1 4.8327 -3.8218 1.4013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225285093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:58 Heat of formation + Delta-G solvation = -23.496541 kcal Electronic energy + Delta-G solvation = -21652.123692 eV Core-core repulsion = 18368.060553 eV Total energy + Delta-G solvation = -3284.063139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.77172 -38.65621 -36.74255 -36.33179 -32.82680 -32.37996 -31.85398 -29.39100 -28.31123 -27.29472 -25.92884 -24.55830 -22.68652 -21.74576 -20.33895 -20.11751 -18.08583 -17.48485 -17.24710 -16.69132 -15.61017 -15.20862 -14.79995 -14.56241 -14.36753 -14.10398 -13.91269 -13.76185 -13.34767 -12.88890 -12.70062 -12.43655 -12.22845 -12.11397 -11.97551 -11.70691 -11.32922 -11.01704 -10.85702 -10.43253 -10.37250 -10.13737 -10.06389 -9.96148 -9.77510 -9.66658 -9.53043 -8.68377 -8.14112 -6.94519 -5.79329 -3.14207 1.04856 1.29706 3.27038 3.36318 3.41944 3.43922 3.58603 4.09442 4.44066 4.51825 4.72524 4.81029 4.98045 5.10489 5.16691 5.23402 5.30977 5.43176 5.45299 5.49806 5.51419 5.55741 5.61905 5.70392 5.84442 6.03702 6.09804 6.16818 6.27977 6.35060 6.48075 6.49438 6.67115 7.45053 7.47116 7.48721 7.62934 7.72992 7.99227 8.15451 9.12658 9.72182 10.36278 11.32457 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.004131 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.309076 B = 6776.406288 C = 7394.488247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.074 3.926 3 C -0.122 4.122 4 C -0.165 4.165 5 C 0.110 3.890 6 O -0.293 6.293 7 C 0.061 3.939 8 H 0.081 0.919 9 C -0.135 4.135 10 C 0.179 3.821 11 N -0.602 5.602 12 C -0.232 4.232 13 H 0.079 0.921 14 C -0.006 4.006 15 N -0.922 5.922 16 Si 0.915 3.085 17 H -0.288 1.288 18 H -0.280 1.280 19 H -0.289 1.289 20 C 0.121 3.879 21 C 0.089 3.911 22 C 0.140 3.860 23 O -0.563 6.563 24 N -0.436 5.436 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.254 0.746 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.075 -9.976 -4.200 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.191 4.191 5 C 0.061 3.939 6 O -0.204 6.204 7 C 0.004 3.996 8 H 0.099 0.901 9 C -0.173 4.173 10 C 0.054 3.946 11 N -0.330 5.330 12 C -0.360 4.360 13 H 0.097 0.903 14 C -0.202 4.202 15 N -0.569 5.569 16 Si 0.745 3.255 17 H -0.215 1.215 18 H -0.206 1.206 19 H -0.216 1.216 20 C -0.006 4.006 21 C -0.050 4.050 22 C 0.062 3.938 23 O -0.368 6.368 24 N -0.147 5.147 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.494 -10.189 -4.044 18.172 hybrid contribution 1.070 1.404 0.370 1.804 sum -13.423 -8.785 -3.674 16.458 Atomic orbital electron populations 1.20582 0.88726 1.03189 1.02654 1.21068 0.96943 0.88030 1.00369 1.21837 0.93866 0.99321 0.99187 1.21899 0.95505 0.98045 1.03678 1.19916 0.84574 0.94174 0.95241 1.86152 1.13749 1.34116 1.86335 1.24017 0.92963 0.83237 0.99367 0.90115 1.23042 0.92597 1.01798 0.99913 1.21210 0.93791 0.90764 0.88843 1.44340 1.25414 1.32255 1.31014 1.19062 1.07106 1.03190 1.06618 0.90287 1.24815 0.97498 0.99618 0.98295 1.69942 1.17638 1.41377 1.27971 0.86080 0.77629 0.82214 0.79603 1.21509 1.20602 1.21550 1.21948 0.91440 0.93936 0.93232 1.20219 0.88463 0.92989 1.03344 1.20620 0.97944 0.90927 0.84336 1.86553 1.82581 1.41605 1.26060 1.67226 1.07764 1.29485 1.10206 0.90895 0.90766 0.90948 0.84529 0.83483 0.91356 0.91011 0.93005 0.93160 0.93593 0.94979 0.94025 0.92202 0.91436 0.77288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.17 36.00 0.37 -0.50 16 2 C 0.07 0.97 6.78 -82.58 -0.56 0.41 16 3 C -0.12 -1.55 9.73 -39.47 -0.38 -1.93 16 4 C -0.17 -2.43 9.05 -39.14 -0.35 -2.78 16 5 C 0.11 1.78 6.66 -39.07 -0.26 1.52 16 6 O -0.29 -5.05 9.00 -19.48 -0.18 -5.22 16 7 C 0.06 1.11 2.82 -24.46 -0.07 1.04 16 8 H 0.08 1.39 6.28 -51.93 -0.33 1.06 16 9 C -0.14 -2.52 6.68 -24.89 -0.17 -2.68 16 10 C 0.18 4.25 5.37 -3.06 -0.02 4.23 16 11 N -0.60 -15.34 3.39 -169.94 -0.58 -15.91 16 12 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 13 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 14 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 15 N -0.92 -26.60 10.31 55.49 0.57 -26.03 16 16 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 C 0.12 2.58 6.89 -2.41 -0.02 2.56 16 21 C 0.09 1.39 6.43 -82.41 -0.53 0.86 16 22 C 0.14 1.83 7.12 36.01 0.26 2.09 16 23 O -0.56 -7.62 13.64 -35.23 -0.48 -8.10 16 24 N -0.44 -6.58 10.18 -5.62 -0.06 -6.64 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 29 H 0.15 2.12 5.85 -52.49 -0.31 1.81 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 33 H 0.05 1.32 7.51 -51.93 -0.39 0.93 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 39 H 0.38 3.03 9.12 45.56 0.42 3.44 16 LS Contribution 323.51 15.07 4.88 4.88 Total: -1.00 -32.73 323.51 -7.56 -40.29 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.71 Total: 1.92 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.98 Total: -2.01 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.06 Total: -48.58 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.66 Total: -13.32 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.73 -7.56 -40.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225285093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.797 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds