Wall clock time and date at job start Tue Mar 31 2020 00:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38247 * 119.55983 * 2 1 4 4 C 1.38534 * 119.22976 * 180.02562 * 3 2 1 5 5 C 1.39144 * 118.36871 * 0.02562 * 4 3 2 6 6 O 1.35917 * 120.47192 * 180.02562 * 5 4 3 7 7 C 1.42900 * 116.99719 * 354.30128 * 6 5 4 8 8 H 1.08999 * 110.88700 * 327.63740 * 7 6 5 9 9 C 1.55161 * 110.99783 * 203.75842 * 7 6 5 10 10 C 1.54324 * 102.93716 * 206.38502 * 9 7 6 11 11 N 1.47020 * 107.27409 * 22.19753 * 10 9 7 12 12 C 1.36932 * 125.64711 * 181.02293 * 11 10 9 13 13 H 1.08005 * 120.00053 * 180.02562 * 12 11 10 14 14 C 1.38806 * 120.00434 * 0.02562 * 12 11 10 15 15 N 1.31626 * 119.99748 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00450 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47304 * 270.00050 * 16 14 12 18 18 H 1.48508 * 109.47155 * 29.99935 * 16 14 12 19 19 H 1.48503 * 109.47358 * 149.99791 * 16 14 12 20 20 C 1.47420 * 108.70234 * 1.28321 * 11 10 9 21 21 C 1.38703 * 119.05347 * 0.26636 * 5 4 3 22 22 C 1.50706 * 119.66031 * 179.72726 * 21 5 4 23 23 O 1.42895 * 109.46645 * 90.00060 * 22 21 5 24 24 N 1.31844 * 120.68183 * 359.43955 * 21 5 4 25 25 H 1.09004 * 109.47025 * 90.00267 * 1 2 3 26 26 H 1.08998 * 109.47236 * 210.00033 * 1 2 3 27 27 H 1.08994 * 109.47291 * 330.00253 * 1 2 3 28 28 H 1.08006 * 120.38670 * 0.03915 * 3 2 1 29 29 H 1.07992 * 120.81703 * 180.02562 * 4 3 2 30 30 H 1.09003 * 110.71732 * 88.02624 * 9 7 6 31 31 H 1.08993 * 110.87339 * 324.82092 * 9 7 6 32 32 H 1.08997 * 109.88548 * 262.77466 * 10 9 7 33 33 H 1.09006 * 109.87712 * 141.61472 * 10 9 7 34 34 H 0.97001 * 119.99854 * 180.02562 * 15 14 12 35 35 H 1.09002 * 110.36748 * 94.48590 * 20 11 10 36 36 H 1.09000 * 110.36864 * 216.80409 * 20 11 10 37 37 H 1.08992 * 109.47177 * 210.00371 * 22 21 5 38 38 H 1.09001 * 109.46701 * 330.00632 * 22 21 5 39 39 H 0.96706 * 113.99657 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.2025 0.0000 4 6 3.5743 1.1946 -0.0005 5 6 4.2284 -0.0336 -0.0016 6 8 5.5863 -0.0913 -0.0017 7 6 6.2882 1.1471 -0.1270 8 1 5.7275 1.8511 -0.7419 9 6 7.7137 0.9230 -0.6973 10 6 8.5020 2.1270 -0.1400 11 7 7.7800 2.6104 1.0459 12 6 8.1425 3.6803 1.8199 13 1 7.5428 3.9563 2.6747 14 6 9.2807 4.4101 1.5059 15 7 10.0119 4.0734 0.4645 16 14 9.7756 5.8691 2.5621 17 1 9.1405 7.1023 2.0318 18 1 9.3273 5.6432 3.9598 19 1 11.2525 6.0218 2.5347 20 6 6.6045 1.7487 1.2675 21 6 3.4748 -1.1980 -0.0077 22 6 4.1691 -2.5356 -0.0152 23 8 4.3889 -2.9656 1.3297 24 7 2.1574 -1.1469 -0.0014 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6481 2.1374 0.0006 29 1 4.1329 2.1188 -0.0001 30 1 7.7004 0.9419 -1.7871 31 1 8.1342 -0.0147 -0.3344 32 1 8.5530 2.9161 -0.8902 33 1 9.5077 1.8137 0.1404 34 1 10.8075 4.5832 0.2453 35 1 6.8424 0.9582 1.9792 36 1 5.7620 2.3409 1.6247 37 1 3.5465 -3.2652 -0.5329 38 1 5.1263 -2.4452 -0.5287 39 1 4.8327 -3.8218 1.4013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225285093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:58 Heat of formation + Delta-G solvation = -47.107415 kcal Electronic energy + Delta-G solvation = -21653.147536 eV Core-core repulsion = 18368.060553 eV Total energy + Delta-G solvation = -3285.086983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.91049 -40.01770 -38.04214 -37.65988 -34.43154 -33.65612 -33.02890 -31.21079 -29.55288 -28.73028 -27.06051 -26.37246 -23.91578 -22.82194 -22.11857 -21.62273 -19.35500 -19.05910 -18.46656 -17.99053 -16.88333 -16.64520 -16.49971 -15.92098 -15.78498 -15.20804 -15.02916 -14.89137 -14.77520 -14.44786 -14.00186 -13.92656 -13.56810 -13.24878 -13.06764 -12.98693 -12.90055 -12.72770 -12.41744 -12.20823 -12.06255 -11.94241 -11.68600 -11.55538 -11.03132 -10.76396 -10.75550 -10.60701 -9.28563 -8.99321 -7.90205 -5.27874 -0.00974 0.19401 1.45825 1.47552 1.56361 1.95513 2.47691 2.55498 3.12854 3.28960 3.48766 3.54732 3.63098 3.73274 3.85191 3.90744 3.99140 4.05789 4.13889 4.37134 4.50086 4.51450 4.58639 4.65841 4.74954 4.80912 4.85222 4.87215 4.92048 5.04748 5.13159 5.17557 5.38722 5.54556 5.56125 5.67403 6.10312 6.22710 6.89217 6.93605 7.03598 7.67802 8.31379 9.20090 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.004131 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.309076 B = 6776.406288 C = 7394.488247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.072 3.928 3 C -0.120 4.120 4 C -0.172 4.172 5 C 0.081 3.919 6 O -0.297 6.297 7 C 0.081 3.919 8 H 0.093 0.907 9 C -0.121 4.121 10 C 0.186 3.814 11 N -0.622 5.622 12 C -0.250 4.250 13 H 0.082 0.918 14 C -0.059 4.059 15 N -0.948 5.948 16 Si 0.981 3.019 17 H -0.282 1.282 18 H -0.271 1.271 19 H -0.292 1.292 20 C 0.120 3.880 21 C 0.074 3.926 22 C 0.140 3.860 23 O -0.586 6.586 24 N -0.454 5.454 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.170 0.830 29 H 0.147 0.853 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.026 0.974 33 H 0.016 0.984 34 H 0.250 0.750 35 H 0.021 0.979 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.162 -9.941 -4.298 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.198 4.198 5 C 0.033 3.967 6 O -0.208 6.208 7 C 0.024 3.976 8 H 0.111 0.889 9 C -0.159 4.159 10 C 0.061 3.939 11 N -0.350 5.350 12 C -0.379 4.379 13 H 0.100 0.900 14 C -0.253 4.253 15 N -0.597 5.597 16 Si 0.809 3.191 17 H -0.209 1.209 18 H -0.196 1.196 19 H -0.219 1.219 20 C -0.006 4.006 21 C -0.065 4.065 22 C 0.062 3.938 23 O -0.395 6.395 24 N -0.166 5.166 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.188 0.812 29 H 0.164 0.836 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -16.605 -10.197 -4.135 19.920 hybrid contribution 1.589 1.344 0.434 2.126 sum -15.017 -8.853 -3.702 17.821 Atomic orbital electron populations 1.20709 0.85882 1.04295 1.04059 1.21808 0.98866 0.87668 0.98309 1.22211 0.93122 1.00737 0.97839 1.22045 0.96631 0.97479 1.03686 1.20124 0.83968 0.95224 0.97408 1.86119 1.14710 1.32949 1.87060 1.23635 0.93009 0.83924 0.97032 0.88909 1.22863 0.92162 0.99509 1.01410 1.20960 0.93151 0.91852 0.87914 1.44608 1.26900 1.32329 1.31197 1.19432 1.07375 1.03968 1.07089 0.90034 1.25656 0.97591 1.02360 0.99661 1.70150 1.17791 1.42348 1.29380 0.85048 0.76782 0.78927 0.78356 1.20879 1.19592 1.21875 1.22017 0.90187 0.93201 0.95210 1.20620 0.88892 0.93801 1.03144 1.20680 0.98319 0.90507 0.84308 1.86486 1.83106 1.43410 1.26481 1.67338 1.07565 1.30583 1.11076 0.89198 0.90919 0.88613 0.81208 0.83568 0.88521 0.90295 0.95613 0.96585 0.94087 0.96120 0.93456 0.90457 0.91044 0.74815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 10.17 71.23 0.72 -0.66 16 2 C 0.07 1.71 6.78 42.56 0.29 2.00 16 3 C -0.12 -2.71 9.73 22.34 0.22 -2.49 16 4 C -0.17 -4.80 9.05 22.56 0.20 -4.59 16 5 C 0.08 2.54 6.66 22.60 0.15 2.69 16 6 O -0.30 -9.99 9.00 -92.62 -0.83 -10.82 16 7 C 0.08 2.88 2.82 32.07 0.09 2.97 16 8 H 0.09 3.08 6.28 -2.39 -0.01 3.06 16 9 C -0.12 -4.45 6.68 31.78 0.21 -4.24 16 10 C 0.19 9.08 5.37 86.73 0.47 9.55 16 11 N -0.62 -32.25 3.39 -691.56 -2.35 -34.60 16 12 C -0.25 -14.05 10.28 84.03 0.86 -13.18 16 13 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 14 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 15 N -0.95 -56.10 10.31 21.65 0.22 -55.88 16 16 Si 0.98 45.24 29.55 68.60 2.03 47.26 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 20 C 0.12 5.12 6.89 86.93 0.60 5.72 16 21 C 0.07 2.23 6.43 42.67 0.27 2.50 16 22 C 0.14 3.50 7.12 71.24 0.51 4.01 16 23 O -0.59 -15.31 13.64 -148.98 -2.03 -17.34 16 24 N -0.45 -12.98 10.18 -171.70 -1.75 -14.73 16 25 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 1.00 8.08 -2.39 -0.02 0.99 16 28 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.15 4.02 5.85 -2.91 -0.02 4.00 16 30 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.03 1.37 7.38 -2.39 -0.02 1.35 16 33 H 0.02 0.87 7.51 -2.38 -0.02 0.86 16 34 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 1.94 7.86 -2.39 -0.02 1.92 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.69 7.52 -2.39 -0.02 1.67 16 39 H 0.40 5.94 9.12 -74.05 -0.68 5.27 16 Total: -1.00 -71.39 323.51 0.74 -70.65 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.39 Total: 14.06 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 5.06 Total: 1.39 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.87 Total: -105.21 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -2.87 Total: -28.16 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -71.39 0.74 -70.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225285093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.542 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds