Wall clock time and date at job start Tue Mar 31 2020 00:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.55860 * 2 1 4 4 C 1.38529 * 119.22170 * 180.02562 * 3 2 1 5 5 C 1.39138 * 118.37545 * 0.02562 * 4 3 2 6 6 O 1.35912 * 120.47007 * 180.02562 * 5 4 3 7 7 C 1.42900 * 117.00475 * 359.97438 * 6 5 4 8 8 H 1.09004 * 110.88444 * 32.42519 * 7 6 5 9 9 C 1.55405 * 111.03994 * 156.23007 * 7 6 5 10 10 C 1.54325 * 102.82616 * 153.47156 * 9 7 6 11 11 N 1.47018 * 107.40412 * 337.97548 * 10 9 7 12 12 C 1.36936 * 125.64999 * 178.82784 * 11 10 9 13 13 H 1.08004 * 120.00405 * 180.02562 * 12 11 10 14 14 C 1.38812 * 120.00093 * 0.02562 * 12 11 10 15 15 N 1.31626 * 119.99909 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00506 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46953 * 90.00082 * 16 14 12 18 18 H 1.48500 * 109.47552 * 210.00252 * 16 14 12 19 19 H 1.48501 * 109.47075 * 330.00551 * 16 14 12 20 20 C 1.47426 * 108.70517 * 358.86539 * 11 10 9 21 21 C 1.38705 * 119.05233 * 0.27463 * 5 4 3 22 22 C 1.50706 * 119.65428 * 179.72923 * 21 5 4 23 23 O 1.42901 * 109.47297 * 89.99967 * 22 21 5 24 24 N 1.31839 * 120.68238 * 359.42874 * 21 5 4 25 25 H 1.08998 * 109.46907 * 89.99519 * 1 2 3 26 26 H 1.08992 * 109.46784 * 209.99987 * 1 2 3 27 27 H 1.09001 * 109.46992 * 330.00038 * 1 2 3 28 28 H 1.08003 * 120.38525 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.81190 * 180.02562 * 4 3 2 30 30 H 1.09000 * 110.69068 * 35.18415 * 9 7 6 31 31 H 1.09002 * 110.85092 * 271.83409 * 9 7 6 32 32 H 1.09002 * 109.88192 * 218.47989 * 10 9 7 33 33 H 1.09000 * 109.88128 * 97.46841 * 10 9 7 34 34 H 0.96997 * 120.00493 * 180.02562 * 15 14 12 35 35 H 1.08999 * 110.36956 * 142.96999 * 20 11 10 36 36 H 1.09003 * 110.36599 * 265.28903 * 20 11 10 37 37 H 1.08998 * 109.46633 * 209.99725 * 22 21 5 38 38 H 1.08998 * 109.46883 * 329.99231 * 22 21 5 39 39 H 0.96692 * 113.99663 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.2027 0.0000 4 6 3.5743 1.1946 -0.0005 5 6 4.2284 -0.0335 -0.0016 6 8 5.5863 -0.0912 -0.0017 7 6 6.2886 1.1533 -0.0011 8 1 5.7309 1.9140 0.5453 9 6 7.7188 0.9866 0.5834 10 6 8.5023 2.1288 -0.0971 11 7 7.7731 2.4945 -1.3202 12 6 8.1300 3.4845 -2.1964 13 1 7.5248 3.6765 -3.0700 14 6 9.2698 4.2413 -1.9618 15 7 10.0077 4.0070 -0.8973 16 14 9.7572 5.5912 -3.1573 17 1 9.1247 6.8699 -2.7446 18 1 11.2341 5.7459 -3.1541 19 1 9.3001 5.2312 -4.5235 20 6 6.5933 1.6195 -1.4467 21 6 3.4748 -1.1980 -0.0079 22 6 4.1692 -2.5355 -0.0153 23 8 4.3889 -2.9657 1.3296 24 7 2.1574 -1.1468 -0.0015 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3632 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6481 2.1375 0.0004 29 1 4.1330 2.1189 -0.0001 30 1 8.1357 0.0171 0.3108 31 1 7.7129 1.1145 1.6659 32 1 9.5063 1.7893 -0.3517 33 1 8.5600 2.9881 0.5710 34 1 10.8040 4.5360 -0.7331 35 1 5.7489 2.1773 -1.8514 36 1 6.8224 0.7632 -2.0811 37 1 3.5466 -3.2651 -0.5331 38 1 5.1264 -2.4451 -0.5289 39 1 4.8334 -3.8214 1.4011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225285096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:02 Heat of formation + Delta-G solvation = -22.979815 kcal Electronic energy + Delta-G solvation = -21634.517056 eV Core-core repulsion = 18350.476324 eV Total energy + Delta-G solvation = -3284.040732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77421 -38.65718 -36.75455 -36.33729 -32.83055 -32.38258 -31.85626 -29.39658 -28.30771 -27.31820 -25.92597 -24.57357 -22.71276 -21.74769 -20.31601 -20.11485 -18.11295 -17.48870 -17.25244 -16.69912 -15.62158 -15.18804 -14.82883 -14.58573 -14.30279 -14.14097 -13.89557 -13.77712 -13.37780 -12.90898 -12.69678 -12.38768 -12.29915 -12.18184 -11.97614 -11.63322 -11.34170 -11.02729 -10.86189 -10.43018 -10.38412 -10.14538 -10.08527 -9.94000 -9.79170 -9.66729 -9.53474 -8.69211 -8.13404 -6.95817 -5.80266 -3.15451 1.04930 1.29854 3.26405 3.35414 3.40947 3.42846 3.59462 4.08270 4.42935 4.50766 4.71541 4.80714 4.98752 5.10824 5.15503 5.22773 5.31562 5.42408 5.45621 5.50130 5.51097 5.56938 5.61938 5.70704 5.84646 6.03447 6.10376 6.17090 6.27403 6.35990 6.45707 6.49200 6.64589 7.44580 7.46660 7.48504 7.60785 7.72415 7.99336 8.14542 9.11440 9.71009 10.35057 11.31378 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025088 B = 0.004132 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.792276 B = 6774.033560 C = 7555.378989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.074 3.926 3 C -0.122 4.122 4 C -0.167 4.167 5 C 0.111 3.889 6 O -0.292 6.292 7 C 0.060 3.940 8 H 0.081 0.919 9 C -0.134 4.134 10 C 0.178 3.822 11 N -0.602 5.602 12 C -0.233 4.233 13 H 0.079 0.921 14 C -0.005 4.005 15 N -0.921 5.921 16 Si 0.915 3.085 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.281 1.281 20 C 0.121 3.879 21 C 0.090 3.910 22 C 0.139 3.861 23 O -0.564 6.564 24 N -0.435 5.435 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.254 0.746 35 H 0.042 0.958 36 H 0.031 0.969 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.027 -9.594 3.167 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.193 4.193 5 C 0.062 3.938 6 O -0.203 6.203 7 C 0.003 3.997 8 H 0.099 0.901 9 C -0.172 4.172 10 C 0.053 3.947 11 N -0.330 5.330 12 C -0.361 4.361 13 H 0.097 0.903 14 C -0.202 4.202 15 N -0.568 5.568 16 Si 0.745 3.255 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.206 1.206 20 C -0.005 4.005 21 C -0.050 4.050 22 C 0.061 3.939 23 O -0.370 6.370 24 N -0.146 5.146 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.443 -9.811 3.277 17.765 hybrid contribution 1.059 1.359 -0.749 1.878 sum -13.385 -8.452 2.528 16.030 Atomic orbital electron populations 1.20582 0.88725 1.03122 1.02716 1.21071 0.96943 0.88028 1.00410 1.21835 0.93852 0.99317 0.99152 1.21882 0.95506 0.98071 1.03824 1.19913 0.84587 0.94186 0.95148 1.86147 1.13747 1.33623 1.86806 1.24033 0.93028 0.83244 0.99360 0.90104 1.23074 0.92439 1.01784 0.99931 1.21214 0.93751 0.92531 0.87196 1.44332 1.24795 1.38083 1.25753 1.19056 1.06972 1.07857 1.02193 0.90288 1.24822 0.97477 0.99785 0.98111 1.69942 1.17345 1.42172 1.27384 0.86081 0.77623 0.81654 0.80164 1.21494 1.21541 1.20612 1.21896 0.91475 0.94329 0.92844 1.20197 0.88449 0.92969 1.03383 1.20635 0.98085 0.90948 0.84211 1.86528 1.82565 1.41654 1.26206 1.67220 1.07761 1.29491 1.10175 0.90848 0.90784 0.90982 0.84533 0.83480 0.91038 0.91251 0.93153 0.93003 0.93564 0.94010 0.95177 0.92139 0.91311 0.77290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.17 36.01 0.37 -0.50 16 2 C 0.07 0.97 6.78 -82.58 -0.56 0.41 16 3 C -0.12 -1.54 9.74 -39.46 -0.38 -1.92 16 4 C -0.17 -2.44 9.12 -39.14 -0.36 -2.80 16 5 C 0.11 1.79 6.67 -39.08 -0.26 1.53 16 6 O -0.29 -5.04 9.00 -19.46 -0.18 -5.22 16 7 C 0.06 1.09 2.91 -24.44 -0.07 1.02 16 8 H 0.08 1.41 6.00 -51.93 -0.31 1.10 16 9 C -0.13 -2.52 6.71 -24.76 -0.17 -2.69 16 10 C 0.18 4.23 5.37 -3.07 -0.02 4.21 16 11 N -0.60 -15.20 3.39 -170.07 -0.58 -15.78 16 12 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 13 H 0.08 2.10 7.83 -52.48 -0.41 1.68 16 14 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 15 N -0.92 -26.52 10.31 55.49 0.57 -25.95 16 16 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.12 2.53 6.97 -2.53 -0.02 2.52 16 21 C 0.09 1.40 6.43 -82.41 -0.53 0.87 16 22 C 0.14 1.83 7.11 36.01 0.26 2.09 16 23 O -0.56 -7.39 13.64 -35.23 -0.48 -7.87 16 24 N -0.44 -6.59 10.18 -5.62 -0.06 -6.65 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 29 H 0.15 2.10 6.02 -52.48 -0.32 1.78 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 1.32 7.51 -51.93 -0.39 0.93 16 33 H 0.05 1.34 7.37 -51.93 -0.38 0.96 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 39 H 0.38 2.88 9.12 45.56 0.42 3.29 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -32.49 323.95 -7.57 -40.06 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.72 Total: 1.89 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.99 Total: -2.07 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.06 Total: -48.38 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.66 Total: -13.09 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.49 -7.57 -40.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225285096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.079 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds