Wall clock time and date at job start Tue Mar 31 2020 00:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.55860 * 2 1 4 4 C 1.38529 * 119.22170 * 180.02562 * 3 2 1 5 5 C 1.39138 * 118.37545 * 0.02562 * 4 3 2 6 6 O 1.35912 * 120.47007 * 180.02562 * 5 4 3 7 7 C 1.42900 * 117.00475 * 359.97438 * 6 5 4 8 8 H 1.09004 * 110.88444 * 32.42519 * 7 6 5 9 9 C 1.55405 * 111.03994 * 156.23007 * 7 6 5 10 10 C 1.54325 * 102.82616 * 153.47156 * 9 7 6 11 11 N 1.47018 * 107.40412 * 337.97548 * 10 9 7 12 12 C 1.36936 * 125.64999 * 178.82784 * 11 10 9 13 13 H 1.08004 * 120.00405 * 180.02562 * 12 11 10 14 14 C 1.38812 * 120.00093 * 0.02562 * 12 11 10 15 15 N 1.31626 * 119.99909 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00506 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46953 * 90.00082 * 16 14 12 18 18 H 1.48500 * 109.47552 * 210.00252 * 16 14 12 19 19 H 1.48501 * 109.47075 * 330.00551 * 16 14 12 20 20 C 1.47426 * 108.70517 * 358.86539 * 11 10 9 21 21 C 1.38705 * 119.05233 * 0.27463 * 5 4 3 22 22 C 1.50706 * 119.65428 * 179.72923 * 21 5 4 23 23 O 1.42901 * 109.47297 * 89.99967 * 22 21 5 24 24 N 1.31839 * 120.68238 * 359.42874 * 21 5 4 25 25 H 1.08998 * 109.46907 * 89.99519 * 1 2 3 26 26 H 1.08992 * 109.46784 * 209.99987 * 1 2 3 27 27 H 1.09001 * 109.46992 * 330.00038 * 1 2 3 28 28 H 1.08003 * 120.38525 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.81190 * 180.02562 * 4 3 2 30 30 H 1.09000 * 110.69068 * 35.18415 * 9 7 6 31 31 H 1.09002 * 110.85092 * 271.83409 * 9 7 6 32 32 H 1.09002 * 109.88192 * 218.47989 * 10 9 7 33 33 H 1.09000 * 109.88128 * 97.46841 * 10 9 7 34 34 H 0.96997 * 120.00493 * 180.02562 * 15 14 12 35 35 H 1.08999 * 110.36956 * 142.96999 * 20 11 10 36 36 H 1.09003 * 110.36599 * 265.28903 * 20 11 10 37 37 H 1.08998 * 109.46633 * 209.99725 * 22 21 5 38 38 H 1.08998 * 109.46883 * 329.99231 * 22 21 5 39 39 H 0.96692 * 113.99663 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.2027 0.0000 4 6 3.5743 1.1946 -0.0005 5 6 4.2284 -0.0335 -0.0016 6 8 5.5863 -0.0912 -0.0017 7 6 6.2886 1.1533 -0.0011 8 1 5.7309 1.9140 0.5453 9 6 7.7188 0.9866 0.5834 10 6 8.5023 2.1288 -0.0971 11 7 7.7731 2.4945 -1.3202 12 6 8.1300 3.4845 -2.1964 13 1 7.5248 3.6765 -3.0700 14 6 9.2698 4.2413 -1.9618 15 7 10.0077 4.0070 -0.8973 16 14 9.7572 5.5912 -3.1573 17 1 9.1247 6.8699 -2.7446 18 1 11.2341 5.7459 -3.1541 19 1 9.3001 5.2312 -4.5235 20 6 6.5933 1.6195 -1.4467 21 6 3.4748 -1.1980 -0.0079 22 6 4.1692 -2.5355 -0.0153 23 8 4.3889 -2.9657 1.3296 24 7 2.1574 -1.1468 -0.0015 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3632 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6481 2.1375 0.0004 29 1 4.1330 2.1189 -0.0001 30 1 8.1357 0.0171 0.3108 31 1 7.7129 1.1145 1.6659 32 1 9.5063 1.7893 -0.3517 33 1 8.5600 2.9881 0.5710 34 1 10.8040 4.5360 -0.7331 35 1 5.7489 2.1773 -1.8514 36 1 6.8224 0.7632 -2.0811 37 1 3.5466 -3.2651 -0.5331 38 1 5.1264 -2.4451 -0.5289 39 1 4.8334 -3.8214 1.4011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225285096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:01 Heat of formation + Delta-G solvation = -46.284462 kcal Electronic energy + Delta-G solvation = -21635.527621 eV Core-core repulsion = 18350.476324 eV Total energy + Delta-G solvation = -3285.051297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.91295 -40.01626 -38.03944 -37.65701 -34.42641 -33.65624 -33.02603 -31.21050 -29.55080 -28.74440 -27.05142 -26.37836 -23.94782 -22.82301 -22.10554 -21.59832 -19.37916 -19.05584 -18.45905 -17.99216 -16.89398 -16.59237 -16.52413 -15.92844 -15.78190 -15.18114 -15.04151 -14.90619 -14.78390 -14.45531 -13.99061 -13.91963 -13.57527 -13.36832 -13.02739 -12.94103 -12.87550 -12.68776 -12.46170 -12.21007 -12.06034 -11.93851 -11.68386 -11.54393 -11.03463 -10.76669 -10.75177 -10.60691 -9.28032 -8.99017 -7.89769 -5.27586 -0.00846 0.19613 1.46213 1.47875 1.56677 1.95002 2.47695 2.56585 3.11437 3.29466 3.47920 3.54234 3.63193 3.71304 3.86428 3.90025 3.99980 4.06202 4.13389 4.37096 4.49120 4.51625 4.58855 4.66381 4.74707 4.81184 4.85178 4.87317 4.91943 5.04374 5.13042 5.17621 5.39359 5.54431 5.55771 5.67615 6.10446 6.22619 6.88915 6.93561 7.03586 7.68177 8.31710 9.20537 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025088 B = 0.004132 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.792276 B = 6774.033560 C = 7555.378989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.072 3.928 3 C -0.119 4.119 4 C -0.173 4.173 5 C 0.082 3.918 6 O -0.297 6.297 7 C 0.079 3.921 8 H 0.091 0.909 9 C -0.121 4.121 10 C 0.186 3.814 11 N -0.622 5.622 12 C -0.249 4.249 13 H 0.084 0.916 14 C -0.060 4.060 15 N -0.949 5.949 16 Si 0.981 3.019 17 H -0.283 1.283 18 H -0.293 1.293 19 H -0.270 1.270 20 C 0.121 3.879 21 C 0.074 3.926 22 C 0.140 3.860 23 O -0.583 6.583 24 N -0.454 5.454 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.171 0.829 29 H 0.148 0.852 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.017 0.983 33 H 0.024 0.976 34 H 0.250 0.750 35 H 0.049 0.951 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.180 -9.572 3.003 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.200 4.200 5 C 0.033 3.967 6 O -0.208 6.208 7 C 0.022 3.978 8 H 0.108 0.892 9 C -0.159 4.159 10 C 0.061 3.939 11 N -0.350 5.350 12 C -0.378 4.378 13 H 0.101 0.899 14 C -0.253 4.253 15 N -0.597 5.597 16 Si 0.809 3.191 17 H -0.210 1.210 18 H -0.220 1.220 19 H -0.195 1.195 20 C -0.005 4.005 21 C -0.065 4.065 22 C 0.062 3.938 23 O -0.392 6.392 24 N -0.166 5.166 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.188 0.812 29 H 0.166 0.834 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -16.623 -9.833 3.110 19.563 hybrid contribution 1.593 1.296 -0.704 2.171 sum -15.030 -8.537 2.406 17.452 Atomic orbital electron populations 1.20709 0.85883 1.04363 1.03986 1.21813 0.98866 0.87675 0.98351 1.22215 0.93118 1.00731 0.97775 1.22041 0.96630 0.97526 1.03766 1.20119 0.83975 0.95245 0.97332 1.86113 1.14712 1.32457 1.87532 1.23649 0.92904 0.84095 0.97140 0.89162 1.22894 0.92263 0.99976 1.00795 1.20944 0.93119 0.93067 0.86721 1.44598 1.26343 1.38262 1.25814 1.19442 1.07164 1.08375 1.02783 0.89853 1.25666 0.97618 1.02177 0.99886 1.70152 1.17529 1.43075 1.28988 0.85045 0.76736 0.78813 0.78505 1.20968 1.21965 1.19453 1.21974 0.90159 0.93499 0.94872 1.20590 0.88895 0.93765 1.03238 1.20647 0.98194 0.90532 0.84383 1.86464 1.83066 1.43456 1.26228 1.67329 1.07550 1.30613 1.11063 0.89409 0.90840 0.88491 0.81168 0.83441 0.90246 0.88932 0.96524 0.95779 0.94118 0.93285 0.95637 0.90614 0.91339 0.74789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 10.17 71.24 0.72 -0.66 16 2 C 0.07 1.69 6.78 42.56 0.29 1.98 16 3 C -0.12 -2.68 9.74 22.35 0.22 -2.47 16 4 C -0.17 -4.81 9.12 22.56 0.21 -4.60 16 5 C 0.08 2.56 6.67 22.60 0.15 2.71 16 6 O -0.30 -9.99 9.00 -92.56 -0.83 -10.82 16 7 C 0.08 2.82 2.91 32.08 0.09 2.92 16 8 H 0.09 3.05 6.00 -2.39 -0.01 3.04 16 9 C -0.12 -4.51 6.71 31.87 0.21 -4.30 16 10 C 0.19 9.11 5.37 86.73 0.47 9.57 16 11 N -0.62 -31.90 3.39 -691.97 -2.35 -34.25 16 12 C -0.25 -13.84 10.28 84.03 0.86 -12.98 16 13 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 14 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 15 N -0.95 -56.09 10.31 21.65 0.22 -55.87 16 16 Si 0.98 44.96 29.55 68.60 2.03 46.98 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 C 0.12 5.03 6.97 86.86 0.61 5.63 16 21 C 0.07 2.23 6.43 42.67 0.27 2.50 16 22 C 0.14 3.55 7.11 71.24 0.51 4.06 16 23 O -0.58 -14.60 13.64 -148.98 -2.03 -16.63 16 24 N -0.45 -13.01 10.18 -171.69 -1.75 -14.76 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 0.99 8.08 -2.39 -0.02 0.97 16 28 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.15 3.99 6.02 -2.91 -0.02 3.98 16 30 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.02 0.91 7.51 -2.39 -0.02 0.89 16 33 H 0.02 1.29 7.37 -2.39 -0.02 1.27 16 34 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.69 7.52 -2.39 -0.02 1.67 16 39 H 0.40 5.54 9.12 -74.06 -0.68 4.87 16 Total: -1.00 -70.63 323.95 0.75 -69.88 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.39 Total: 14.01 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.08 Total: 1.46 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -3.87 Total: -104.88 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -2.87 Total: -27.45 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -70.63 0.75 -69.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225285096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.593 kcal (2) G-P(sol) polarization free energy of solvation -70.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds