Wall clock time and date at job start Tue Mar 31 2020 00:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35017 * 119.56094 * 2 1 4 4 C 1.40918 * 119.80966 * 180.02562 * 3 2 1 5 5 O 1.35455 * 120.51088 * 179.97438 * 4 3 2 6 6 C 1.42899 * 116.99803 * 174.98844 * 5 4 3 7 7 H 1.09004 * 110.64272 * 321.92117 * 6 5 4 8 8 C 1.55155 * 110.72172 * 198.58089 * 6 5 4 9 9 C 1.55129 * 101.48610 * 205.97093 * 8 6 5 10 10 N 1.47422 * 104.72389 * 37.29521 * 9 8 6 11 11 C 1.36936 * 125.65215 * 155.81576 * 10 9 8 12 12 H 1.08003 * 120.00543 * 179.68940 * 11 10 9 13 13 C 1.38815 * 119.99618 * 359.69074 * 11 10 9 14 14 N 1.31617 * 120.00174 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99835 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46790 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47251 * 300.00239 * 15 13 11 18 18 H 1.48494 * 109.46913 * 60.00327 * 15 13 11 19 19 C 1.47020 * 108.70346 * 335.55275 * 10 9 8 20 20 C 1.38255 * 118.97638 * 0.27568 * 4 3 2 21 21 C 1.39971 * 119.12228 * 359.43378 * 20 4 3 22 22 O 1.22122 * 119.93091 * 180.31750 * 21 20 4 23 23 N 1.34596 * 120.14127 * 0.57482 * 21 20 4 24 24 C 1.46497 * 119.46754 * 179.74487 * 23 21 20 25 25 H 1.09003 * 109.46811 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47626 * 120.00213 * 1 2 3 27 27 H 1.09006 * 109.47099 * 240.00267 * 1 2 3 28 28 H 1.08004 * 120.09588 * 359.97387 * 3 2 1 29 29 H 1.09001 * 110.99951 * 324.20771 * 8 6 5 30 30 H 1.08993 * 111.00311 * 88.02349 * 8 6 5 31 31 H 1.08999 * 110.49766 * 278.45111 * 9 8 6 32 32 H 1.09005 * 110.34211 * 156.05861 * 9 8 6 33 33 H 0.96998 * 120.00143 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.88687 * 120.70352 * 19 10 9 35 35 H 1.09001 * 109.88362 * 241.86921 * 19 10 9 36 36 H 1.08004 * 120.43835 * 179.70672 * 20 4 3 37 37 H 1.09004 * 109.47524 * 269.97891 * 24 23 21 38 38 H 1.09005 * 109.47577 * 29.97649 * 24 23 21 39 39 H 1.09002 * 109.47487 * 149.97569 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1744 0.0000 4 6 3.5823 1.1805 -0.0005 5 8 4.2649 2.3505 -0.0011 6 6 5.6874 2.2716 0.1096 7 1 5.9759 1.4773 0.7982 8 6 6.2796 3.6339 0.5579 9 6 7.7145 3.5541 -0.0261 10 7 7.5543 2.8691 -1.3216 11 6 8.4061 2.9706 -2.3890 12 1 8.2023 2.4221 -3.2968 13 6 9.5317 3.7786 -2.3041 14 7 9.7804 4.4466 -1.1977 15 14 10.6942 3.9166 -3.7599 16 1 11.8105 4.8339 -3.4166 17 1 11.2396 2.5747 -4.0868 18 1 9.9570 4.4505 -4.9331 19 6 6.3317 2.0538 -1.2758 20 6 4.2573 -0.0260 -0.0069 21 6 3.5229 -1.2175 -0.0005 22 8 4.1040 -2.2916 -0.0001 23 7 2.1774 -1.1821 0.0000 24 6 1.4234 -2.4381 0.0010 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 -0.3633 -0.5138 0.8901 28 1 1.6275 2.1065 -0.0004 29 1 5.7228 4.4639 0.1231 30 1 6.3051 3.7100 1.6449 31 1 8.3627 2.9750 0.6316 32 1 8.1196 4.5553 -0.1739 33 1 10.5672 5.0109 -1.1383 34 1 5.6437 2.3728 -2.0588 35 1 6.5829 1.0012 -1.4064 36 1 5.3371 -0.0489 -0.0122 37 1 1.2356 -2.7501 -1.0264 38 1 1.9998 -3.2076 0.5148 39 1 0.4737 -2.2914 0.5155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225532453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:35 Heat of formation + Delta-G solvation = -8.236448 kcal Electronic energy + Delta-G solvation = -21670.655087 eV Core-core repulsion = 18387.253675 eV Total energy + Delta-G solvation = -3283.401412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.47233 -39.35024 -37.14899 -36.44151 -33.55538 -32.22745 -31.74932 -29.35092 -28.08087 -27.46264 -26.79982 -24.58227 -22.82103 -22.25849 -20.39940 -20.17381 -17.82241 -17.63661 -17.07946 -16.76577 -16.31006 -15.62738 -14.98872 -14.76764 -14.26612 -13.88641 -13.78430 -13.63907 -13.43359 -13.28215 -13.04042 -12.80030 -12.48461 -12.46945 -11.91086 -11.70807 -11.38331 -11.24457 -11.00570 -10.78228 -10.55370 -10.40629 -10.13466 -9.93712 -9.84399 -9.62513 -8.94547 -8.68485 -7.92974 -6.89406 -5.68568 -3.10999 0.84665 1.91226 2.57867 3.19236 3.41490 3.45164 3.46895 3.68139 4.16013 4.47471 4.53566 4.73932 4.91215 4.99751 5.07936 5.11114 5.19583 5.27134 5.32866 5.38044 5.43272 5.46107 5.53529 5.60066 5.72303 5.99879 6.18047 6.23119 6.33363 6.43480 6.49736 6.59069 6.64062 7.09234 7.41164 7.48995 7.58595 7.78860 8.14669 8.30430 9.17909 9.77988 10.40828 11.35764 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030565 B = 0.003822 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.864186 B = 7324.509629 C = 7724.288846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.178 3.822 3 C -0.232 4.232 4 C 0.232 3.768 5 O -0.292 6.292 6 C 0.066 3.934 7 H 0.083 0.917 8 C -0.134 4.134 9 C 0.152 3.848 10 N -0.601 5.601 11 C -0.224 4.224 12 H 0.078 0.922 13 C -0.009 4.009 14 N -0.924 5.924 15 Si 0.918 3.082 16 H -0.289 1.289 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.118 3.882 20 C -0.364 4.364 21 C 0.534 3.466 22 O -0.561 6.561 23 N -0.509 5.509 24 C 0.058 3.942 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.153 0.847 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.018 0.982 32 H 0.116 0.884 33 H 0.254 0.746 34 H 0.035 0.965 35 H 0.030 0.970 36 H 0.155 0.845 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.979 -6.751 5.146 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.069 3.931 3 C -0.256 4.256 4 C 0.180 3.820 5 O -0.201 6.201 6 C 0.011 3.989 7 H 0.101 0.899 8 C -0.172 4.172 9 C 0.027 3.973 10 N -0.328 5.328 11 C -0.352 4.352 12 H 0.096 0.904 13 C -0.205 4.205 14 N -0.572 5.572 15 Si 0.748 3.252 16 H -0.215 1.215 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.008 4.008 20 C -0.387 4.387 21 C 0.339 3.661 22 O -0.445 6.445 23 N -0.223 5.223 24 C -0.084 4.084 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.170 0.830 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.036 0.964 32 H 0.133 0.867 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.172 0.828 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.448 -7.136 5.070 22.243 hybrid contribution 0.807 -0.113 -0.737 1.099 sum -19.641 -7.249 4.333 21.380 Atomic orbital electron populations 1.21069 0.87837 1.05329 1.03607 1.20190 0.94821 0.84859 0.93240 1.19863 0.91172 0.97724 1.16877 1.19634 0.91372 0.85634 0.85357 1.86044 1.22076 1.27486 1.84528 1.23866 0.75226 1.00936 0.98905 0.89906 1.23254 0.99731 0.94169 1.00086 1.22080 0.88765 1.01563 0.84888 1.44369 1.23762 1.51803 1.12867 1.19053 1.01394 1.22920 0.91870 0.90371 1.24791 0.98399 0.99565 0.97732 1.69727 1.28561 1.33466 1.25482 0.86103 0.80203 0.77509 0.81400 1.21484 1.21123 1.21073 1.21724 0.90214 0.95347 0.93545 1.22291 1.01974 0.90356 1.24065 1.16530 0.79868 0.90947 0.78719 1.90941 1.67722 1.31400 1.54450 1.45408 1.08393 1.06832 1.61639 1.22095 0.96769 0.85854 1.03647 0.88885 0.89708 0.89740 0.82967 0.90635 0.91344 0.96427 0.86653 0.93527 0.94665 0.95188 0.82781 0.90862 0.88904 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 8.71 36.01 0.31 -0.23 16 2 C 0.18 1.69 6.65 -81.94 -0.54 1.15 16 3 C -0.23 -2.66 9.57 -39.71 -0.38 -3.04 16 4 C 0.23 3.55 6.69 -38.56 -0.26 3.29 16 5 O -0.29 -4.96 9.88 -18.06 -0.18 -5.14 16 6 C 0.07 1.24 2.77 -24.89 -0.07 1.17 16 7 H 0.08 1.49 6.60 -51.93 -0.34 1.15 16 8 C -0.13 -2.57 6.82 -24.46 -0.17 -2.73 16 9 C 0.15 3.68 5.91 -2.41 -0.01 3.67 16 10 N -0.60 -15.79 3.39 -169.93 -0.58 -16.37 16 11 C -0.22 -6.38 10.27 -15.06 -0.15 -6.54 16 12 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 13 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 14 N -0.92 -26.86 10.08 55.49 0.56 -26.30 16 15 Si 0.92 22.26 29.55 -169.99 -5.02 17.24 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.12 2.62 6.52 -3.06 -0.02 2.60 16 20 C -0.36 -6.17 8.75 -38.93 -0.34 -6.51 16 21 C 0.53 8.88 7.39 -15.69 -0.12 8.77 16 22 O -0.56 -11.16 16.62 4.81 0.08 -11.08 16 23 N -0.51 -6.06 2.99 -122.79 -0.37 -6.43 16 24 C 0.06 0.47 9.89 59.85 0.59 1.06 16 25 H 0.09 0.30 7.81 -51.93 -0.41 -0.11 16 26 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 27 H 0.08 0.26 7.36 -51.93 -0.38 -0.12 16 28 H 0.15 1.37 7.88 -52.48 -0.41 0.96 16 29 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.12 3.11 5.86 -51.93 -0.30 2.80 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 35 H 0.03 0.68 7.46 -51.93 -0.39 0.29 16 36 H 0.15 2.84 5.41 -52.48 -0.28 2.56 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.89 7.37 -51.93 -0.38 0.51 16 39 H 0.08 0.37 6.36 -51.93 -0.33 0.04 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -34.42 316.21 -7.30 -41.72 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.31 Total: -0.71 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.25 Total: 2.30 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.38 Total: -49.09 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.10 Total: -16.22 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.42 -7.30 -41.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225532453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.482 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds