Wall clock time and date at job start Tue Mar 31 2020 00:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35030 * 119.55509 * 2 1 4 4 C 1.40919 * 119.80681 * 180.27766 * 3 2 1 5 5 O 1.35441 * 120.51063 * 179.71275 * 4 3 2 6 6 C 1.42900 * 117.00267 * 185.18273 * 5 4 3 7 7 H 1.08998 * 110.88373 * 32.29400 * 6 5 4 8 8 C 1.55160 * 111.00789 * 156.17747 * 6 5 4 9 9 C 1.54325 * 102.94494 * 153.61682 * 8 6 5 10 10 N 1.47023 * 107.26884 * 337.80606 * 9 8 6 11 11 C 1.36939 * 125.64837 * 178.89438 * 10 9 8 12 12 H 1.07997 * 120.00022 * 180.02562 * 11 10 9 13 13 C 1.38816 * 119.99583 * 0.02562 * 11 10 9 14 14 N 1.31612 * 120.00015 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99510 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46742 * 90.00255 * 15 13 11 17 17 H 1.48500 * 109.47030 * 209.99873 * 15 13 11 18 18 H 1.48500 * 109.47354 * 330.00366 * 15 13 11 19 19 C 1.47428 * 108.70461 * 358.94199 * 10 9 8 20 20 C 1.38260 * 118.97493 * 359.45050 * 4 3 2 21 21 C 1.39966 * 119.12250 * 0.26956 * 20 4 3 22 22 O 1.22131 * 119.92545 * 179.97438 * 21 20 4 23 23 N 1.34594 * 120.14710 * 0.02562 * 21 20 4 24 24 C 1.46497 * 119.46695 * 179.97438 * 23 21 20 25 25 H 1.09006 * 109.47029 * 270.28071 * 1 2 3 26 26 H 1.08993 * 109.47699 * 30.28158 * 1 2 3 27 27 H 1.09005 * 109.46739 * 150.28567 * 1 2 3 28 28 H 1.08005 * 120.09309 * 0.02562 * 3 2 1 29 29 H 1.09007 * 110.71596 * 271.97887 * 8 6 5 30 30 H 1.08997 * 110.72150 * 35.24751 * 8 6 5 31 31 H 1.09000 * 109.87843 * 97.22209 * 9 8 6 32 32 H 1.08990 * 109.88169 * 218.23547 * 9 8 6 33 33 H 0.97006 * 120.00023 * 179.97438 * 14 13 11 34 34 H 1.08996 * 110.36872 * 265.28980 * 19 10 9 35 35 H 1.09001 * 110.36896 * 142.96644 * 19 10 9 36 36 H 1.08005 * 120.43260 * 180.24799 * 20 4 3 37 37 H 1.08994 * 109.47549 * 359.97438 * 24 23 21 38 38 H 1.09005 * 109.47402 * 119.99693 * 24 23 21 39 39 H 1.09006 * 109.46978 * 239.99711 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1746 0.0000 4 6 3.5822 1.1808 -0.0059 5 8 4.2647 2.3507 -0.0119 6 6 5.6864 2.2718 -0.1326 7 1 5.9778 1.4150 -0.7400 8 6 6.2693 3.5881 -0.7116 9 6 7.7068 3.6058 -0.1504 10 7 7.7204 2.7463 1.0423 11 6 8.8148 2.4784 1.8205 12 1 8.7210 1.8307 2.6797 13 6 10.0448 3.0393 1.5051 14 7 10.1591 3.8282 0.4578 15 14 11.5375 2.6744 2.5672 16 1 12.2327 1.4698 2.0467 17 1 12.4644 3.8341 2.5335 18 1 11.1021 2.4292 3.9656 19 6 6.3609 2.2196 1.2610 20 6 4.2573 -0.0258 -0.0001 21 6 3.5229 -1.2172 0.0058 22 8 4.1043 -2.2913 0.0106 23 7 2.1774 -1.1820 0.0052 24 6 1.4236 -2.4381 0.0109 25 1 -0.3633 0.0050 1.0277 26 1 -0.3634 0.8874 -0.5181 27 1 -0.3633 -0.8926 -0.5094 28 1 1.6273 2.1066 0.0004 29 1 6.2810 3.5582 -1.8012 30 1 5.7052 4.4496 -0.3545 31 1 8.4005 3.2167 -0.8958 32 1 7.9865 4.6239 0.1203 33 1 11.0186 4.2204 0.2376 34 1 5.8197 2.8482 1.9681 35 1 6.4056 1.1923 1.6225 36 1 5.3372 -0.0485 -0.0004 37 1 2.1177 -3.2784 0.0146 38 1 0.7958 -2.4811 0.9009 39 1 0.7963 -2.4893 -0.8791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225532454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:38 Heat of formation + Delta-G solvation = -8.505629 kcal Electronic energy + Delta-G solvation = -21662.449310 eV Core-core repulsion = 18379.036225 eV Total energy + Delta-G solvation = -3283.413084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47118 -39.32605 -37.14833 -36.47785 -33.55833 -32.21980 -31.72611 -29.34155 -28.07048 -27.48328 -26.82220 -24.55820 -22.82351 -22.25761 -20.39631 -20.18501 -17.89229 -17.64384 -17.09545 -16.72070 -16.29911 -15.55841 -14.83835 -14.72711 -14.28815 -14.01266 -13.75992 -13.66262 -13.41767 -13.23236 -13.15201 -12.73975 -12.54804 -12.33126 -12.11484 -11.87456 -11.33463 -11.17918 -10.96343 -10.79535 -10.44648 -10.35397 -10.09061 -9.94153 -9.89102 -9.72237 -8.93278 -8.62790 -7.92008 -6.89394 -5.74134 -3.08686 0.84401 1.90864 2.58217 3.17209 3.41488 3.46446 3.48351 3.67806 4.16262 4.49209 4.60796 4.70971 4.91802 5.00278 5.06922 5.11136 5.17785 5.31202 5.32831 5.37876 5.44953 5.49918 5.57544 5.59537 5.70697 6.00311 6.12890 6.23714 6.29168 6.39561 6.49779 6.56202 6.64208 7.09363 7.47954 7.51214 7.52994 7.78330 8.14975 8.20588 9.18045 9.77469 10.41273 11.37781 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029247 B = 0.003936 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.126437 B = 7112.574423 C = 7748.836633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.180 3.820 3 C -0.234 4.234 4 C 0.234 3.766 5 O -0.293 6.293 6 C 0.060 3.940 7 H 0.088 0.912 8 C -0.135 4.135 9 C 0.178 3.822 10 N -0.602 5.602 11 C -0.231 4.231 12 H 0.080 0.920 13 C -0.006 4.006 14 N -0.923 5.923 15 Si 0.915 3.085 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.281 1.281 19 C 0.121 3.879 20 C -0.365 4.365 21 C 0.535 3.465 22 O -0.561 6.561 23 N -0.509 5.509 24 C 0.054 3.946 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.153 0.847 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.253 0.747 34 H 0.031 0.969 35 H 0.046 0.954 36 H 0.156 0.844 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.213 -5.555 -3.176 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.071 3.929 3 C -0.258 4.258 4 C 0.181 3.819 5 O -0.202 6.202 6 C 0.004 3.996 7 H 0.106 0.894 8 C -0.174 4.174 9 C 0.053 3.947 10 N -0.329 5.329 11 C -0.358 4.358 12 H 0.098 0.902 13 C -0.203 4.203 14 N -0.570 5.570 15 Si 0.745 3.255 16 H -0.215 1.215 17 H -0.216 1.216 18 H -0.206 1.206 19 C -0.006 4.006 20 C -0.387 4.387 21 C 0.340 3.660 22 O -0.445 6.445 23 N -0.223 5.223 24 C -0.088 4.088 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.170 0.830 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.173 0.827 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.651 -5.979 -3.153 22.682 hybrid contribution 1.010 -0.178 0.511 1.146 sum -20.641 -6.158 -2.642 21.701 Atomic orbital electron populations 1.21091 0.87810 1.04839 1.04293 1.20181 0.94835 0.84828 0.93076 1.19826 0.91156 0.97756 1.17092 1.19611 0.91316 0.85557 0.85391 1.85981 1.22216 1.27524 1.84476 1.24085 0.74957 1.00721 0.99827 0.89404 1.23068 0.99268 0.95053 0.99985 1.21212 0.88642 0.96061 0.88738 1.44330 1.03312 1.54827 1.30473 1.19079 0.85890 1.24757 1.06119 0.90228 1.24812 0.97694 0.99495 0.98262 1.69936 1.23880 1.35512 1.27670 0.86074 0.82521 0.77304 0.79607 1.21478 1.21602 1.20610 1.21900 0.87698 0.97962 0.93019 1.22280 1.02071 0.90347 1.24042 1.16544 0.79940 0.90963 0.78588 1.90938 1.67635 1.31365 1.54574 1.45390 1.08417 1.06830 1.61617 1.22103 0.97475 0.86684 1.02512 0.89147 0.88897 0.90202 0.82982 0.91238 0.91011 0.92986 0.93103 0.93625 0.95151 0.93563 0.82660 0.87938 0.90626 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 9.46 36.01 0.34 -0.21 16 2 C 0.18 1.70 6.65 -81.94 -0.54 1.15 16 3 C -0.23 -2.63 9.57 -39.71 -0.38 -3.01 16 4 C 0.23 3.53 6.74 -38.56 -0.26 3.27 16 5 O -0.29 -4.87 9.95 -18.02 -0.18 -5.05 16 6 C 0.06 1.13 2.81 -24.58 -0.07 1.06 16 7 H 0.09 1.65 6.25 -51.93 -0.32 1.32 16 8 C -0.14 -2.56 6.69 -24.89 -0.17 -2.73 16 9 C 0.18 4.32 5.37 -3.06 -0.02 4.31 16 10 N -0.60 -15.71 3.39 -170.07 -0.58 -16.28 16 11 C -0.23 -6.55 10.28 -15.06 -0.15 -6.71 16 12 H 0.08 2.20 7.83 -52.49 -0.41 1.78 16 13 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 14 N -0.92 -27.12 10.31 55.49 0.57 -26.55 16 15 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 C 0.12 2.64 6.88 -2.53 -0.02 2.62 16 20 C -0.36 -6.19 8.93 -38.93 -0.35 -6.54 16 21 C 0.53 8.89 7.39 -15.69 -0.12 8.78 16 22 O -0.56 -11.18 16.36 4.80 0.08 -11.10 16 23 N -0.51 -6.05 2.99 -122.79 -0.37 -6.41 16 24 C 0.05 0.44 9.33 59.85 0.56 1.00 16 25 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.29 8.07 -51.93 -0.42 -0.13 16 27 H 0.08 0.25 6.45 -51.93 -0.34 -0.08 16 28 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 29 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 1.38 7.38 -51.93 -0.38 0.99 16 32 H 0.05 1.35 7.51 -51.93 -0.39 0.96 16 33 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 1.01 7.84 -51.93 -0.41 0.60 16 36 H 0.16 2.90 5.77 -52.48 -0.30 2.60 16 37 H 0.10 1.04 6.84 -51.93 -0.35 0.68 16 38 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 39 H 0.08 0.41 7.34 -51.93 -0.38 0.03 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -34.54 317.72 -7.35 -41.89 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.38 Total: -1.35 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.27 Total: 2.71 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.37 Total: -49.25 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.10 Total: -16.15 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.54 -7.35 -41.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225532454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.389 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds